Wall clock time and date at job start Tue Mar 31 2020 14:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38318 * 119.92076 * 2 1 4 4 C 1.38080 * 120.07164 * 180.02562 * 3 2 1 5 5 C 1.38924 * 119.92613 * 0.02562 * 4 3 2 6 6 N 1.39681 * 120.07457 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00221 * 248.91682 * 6 5 4 8 8 S 1.65607 * 119.99665 * 68.91731 * 6 5 4 9 9 O 1.42094 * 104.27529 * 21.10885 * 8 6 5 10 10 O 1.42101 * 104.27694 * 148.96299 * 8 6 5 11 11 C 1.81396 * 104.44764 * 265.03432 * 8 6 5 12 12 C 1.53003 * 109.46692 * 171.50599 * 11 8 6 13 13 C 1.50701 * 115.54980 * 54.66536 * 12 11 8 14 14 H 1.08005 * 119.99391 * 264.95553 * 13 12 11 15 15 C 1.37870 * 120.00047 * 84.95763 * 13 12 11 16 16 N 1.31510 * 120.00364 * 358.67276 * 15 13 12 17 17 Si 1.86809 * 119.99807 * 178.67058 * 15 13 12 18 18 H 1.48496 * 109.46975 * 90.00084 * 17 15 13 19 19 H 1.48493 * 109.46987 * 210.00059 * 17 15 13 20 20 H 1.48500 * 109.46878 * 329.99879 * 17 15 13 21 21 C 1.53000 * 117.49964 * 268.98719 * 12 11 8 22 22 C 1.53006 * 117.49470 * 200.32859 * 12 11 8 23 23 C 1.38891 * 119.85507 * 0.25161 * 5 4 3 24 24 C 1.50694 * 120.04087 * 179.72546 * 23 5 4 25 25 C 1.38131 * 119.91821 * 359.47482 * 23 5 4 26 26 H 1.09001 * 109.47047 * 90.00338 * 1 2 3 27 27 H 1.08999 * 109.46644 * 209.99736 * 1 2 3 28 28 H 1.08998 * 109.47187 * 330.00354 * 1 2 3 29 29 H 1.07998 * 119.96012 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.03269 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47138 * 270.00022 * 7 6 5 32 32 H 1.08999 * 109.47131 * 150.00129 * 7 6 5 33 33 H 1.09002 * 109.46848 * 29.99990 * 7 6 5 34 34 H 1.08988 * 109.47275 * 291.50571 * 11 8 6 35 35 H 1.09000 * 109.46970 * 51.50976 * 11 8 6 36 36 H 0.97001 * 119.99971 * 185.04410 * 16 15 13 37 37 H 1.09001 * 117.50033 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.49831 * 145.02226 * 21 12 11 39 39 H 1.08996 * 117.49458 * 214.97888 * 22 12 11 40 40 H 1.08992 * 117.50078 * 359.97438 * 22 12 11 41 41 H 1.09004 * 109.47135 * 83.98345 * 24 23 5 42 42 H 1.08998 * 109.47247 * 203.97717 * 24 23 5 43 43 H 1.09002 * 109.47682 * 323.98087 * 24 23 5 44 44 H 1.07999 * 119.95885 * 180.27401 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5778 1.2025 -0.0005 5 6 4.2740 0.0003 -0.0016 6 7 5.6708 0.0003 -0.0027 7 6 6.4024 -0.4555 -1.1872 8 16 6.4998 0.5157 1.3351 9 8 5.5632 0.3926 2.3966 10 8 7.6969 -0.2498 1.3220 11 6 6.8574 2.2624 1.0009 12 6 7.4392 2.9132 2.2575 13 6 8.6501 2.2320 2.8411 14 1 8.5334 1.5150 3.6404 15 6 9.9067 2.5240 2.3548 16 7 10.0464 3.3774 1.3641 17 14 11.4109 1.7073 3.1033 18 1 11.6973 0.4415 2.3818 19 1 12.5778 2.6182 2.9872 20 1 11.1530 1.4132 4.5359 21 6 6.4587 3.5685 3.2323 22 6 7.3681 4.4382 2.3606 23 6 3.5781 -1.2017 -0.0074 24 6 4.3291 -2.5082 -0.0149 25 6 2.1968 -1.1982 -0.0012 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6550 2.1330 0.0004 30 1 4.1158 2.1389 -0.0010 31 1 6.5842 -1.5275 -1.1118 32 1 7.3548 0.0709 -1.2509 33 1 5.8126 -0.2489 -2.0803 34 1 7.5780 2.3363 0.1866 35 1 5.9371 2.7742 0.7195 36 1 10.9214 3.5279 0.9733 37 1 5.3991 3.5355 2.9786 38 1 6.6896 3.5071 4.2958 39 1 8.1970 4.9485 2.8510 40 1 6.9074 4.9776 1.5332 41 1 4.6043 -2.7749 1.0056 42 1 3.6958 -3.2889 -0.4361 43 1 5.2304 -2.4059 -0.6193 44 1 1.6551 -2.1324 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451088977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:49 Heat of formation + Delta-G solvation = -41.763061 kcal Electronic energy + Delta-G solvation = -26387.551863 eV Core-core repulsion = 22817.973407 eV Total energy + Delta-G solvation = -3569.578456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80919 -38.61051 -38.04448 -37.23441 -36.78702 -34.13199 -33.72669 -32.51672 -29.97378 -28.46958 -28.03723 -27.57320 -25.81244 -23.33244 -23.00225 -21.80109 -21.30568 -20.05574 -18.78926 -18.43167 -17.69830 -17.26328 -16.77036 -16.43680 -16.24887 -15.94848 -15.57036 -15.04272 -14.90563 -14.77542 -14.70748 -14.09254 -14.02489 -13.83788 -13.76441 -13.69069 -13.16741 -13.14629 -13.02147 -12.98346 -12.93938 -12.88290 -12.79995 -12.45841 -12.34978 -12.22730 -12.02053 -11.99277 -11.90813 -11.58806 -10.99132 -10.58374 -10.47953 -9.91516 -9.69684 -9.22369 -8.24544 -6.42159 -0.68646 0.33315 0.44096 1.34867 1.39308 1.45905 1.81645 2.36706 2.70365 2.92219 3.02754 3.26146 3.40066 3.76504 3.84530 3.91744 3.99900 4.05628 4.20668 4.36862 4.42926 4.48955 4.51370 4.53846 4.57858 4.68101 4.71645 4.76607 4.80134 4.86684 4.90810 4.94275 4.94880 5.07466 5.15694 5.20127 5.30932 5.37094 5.39992 5.58165 5.62317 5.64995 5.68541 5.73877 6.16266 6.19100 6.65338 7.33027 8.82525 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.004409 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.383296 B = 6349.049237 C = 7094.848088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.141 4.141 5 C 0.122 3.878 6 N -0.959 5.959 7 C 0.081 3.919 8 S 2.615 3.385 9 O -0.985 6.985 10 O -0.983 6.983 11 C -0.549 4.549 12 C 0.008 3.992 13 C -0.544 4.544 14 H 0.045 0.955 15 C 0.049 3.951 16 N -0.888 5.888 17 Si 0.930 3.070 18 H -0.276 1.276 19 H -0.268 1.268 20 H -0.269 1.269 21 C -0.193 4.193 22 C -0.131 4.131 23 C -0.093 4.093 24 C -0.126 4.126 25 C -0.115 4.115 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.267 0.733 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.330 -5.892 -9.038 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.162 4.162 5 C 0.029 3.971 6 N -0.790 5.790 7 C -0.062 4.062 8 S 2.716 3.284 9 O -0.976 6.976 10 O -0.973 6.973 11 C -0.682 4.682 12 C 0.006 3.994 13 C -0.581 4.581 14 H 0.063 0.937 15 C -0.155 4.155 16 N -0.524 5.524 17 Si 0.755 3.245 18 H -0.202 1.202 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.230 4.230 22 C -0.170 4.170 23 C -0.096 4.096 24 C -0.182 4.182 25 C -0.133 4.133 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.167 0.833 30 H 0.145 0.855 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.886 -6.344 -8.402 19.900 hybrid contribution 1.519 0.321 0.076 1.554 sum -15.368 -6.023 -8.326 18.487 Atomic orbital electron populations 1.20837 0.88529 1.03817 1.03438 1.20354 0.97952 0.92515 0.98115 1.21180 0.92621 0.99301 1.00336 1.21567 0.96046 0.96960 1.01605 1.17409 0.81450 0.94040 1.04171 1.55296 1.11973 1.79880 1.31869 1.21849 0.96360 1.00997 0.86979 1.04857 0.72431 0.78205 0.72951 1.93451 1.63110 1.87170 1.53834 1.93475 1.48907 1.69157 1.85787 1.29908 1.08888 1.21493 1.07873 1.18381 0.95267 0.94278 0.91503 1.20708 0.91288 1.25476 1.20663 0.93669 1.25487 1.00875 0.94087 0.95057 1.70014 1.24863 1.33343 1.24190 0.85971 0.79938 0.79010 0.79593 1.20159 1.19289 1.19322 1.23209 0.95906 1.06753 0.97159 1.22462 0.99992 0.93571 1.00945 1.20313 0.94860 0.94726 0.99735 1.20992 1.01033 0.93919 1.02247 1.21152 0.92106 0.99215 1.00856 0.89672 0.90524 0.90625 0.83255 0.85534 0.91118 0.90894 0.88107 0.85861 0.85104 0.92348 0.88406 0.90091 0.91392 0.89352 0.92621 0.88641 0.90735 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.65 16 2 C -0.09 -1.79 5.88 -19.84 -0.12 -1.90 16 3 C -0.12 -2.60 9.69 22.25 0.22 -2.38 16 4 C -0.14 -3.93 9.86 22.40 0.22 -3.71 16 5 C 0.12 3.77 4.47 38.21 0.17 3.94 16 6 N -0.96 -32.11 2.70 -360.82 -0.97 -33.08 16 7 C 0.08 2.19 9.26 127.77 1.18 3.37 16 8 S 2.62 114.78 4.73 -56.49 -0.27 114.51 16 9 O -0.99 -47.39 17.15 -127.65 -2.19 -49.58 16 10 O -0.98 -50.13 16.76 -127.65 -2.14 -52.27 16 11 C -0.55 -23.45 6.11 71.98 0.44 -23.01 16 12 C 0.01 0.39 1.50 -52.92 -0.08 0.31 16 13 C -0.54 -30.90 7.68 25.60 0.20 -30.70 16 14 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 15 C 0.05 2.72 5.41 84.65 0.46 3.18 16 16 N -0.89 -49.40 12.79 21.44 0.27 -49.13 16 17 Si 0.93 44.88 29.54 68.60 2.03 46.91 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 21 C -0.19 -8.46 9.93 30.62 0.30 -8.15 16 22 C -0.13 -5.93 9.33 30.62 0.29 -5.64 16 23 C -0.09 -2.52 5.88 -19.74 -0.12 -2.64 16 24 C -0.13 -3.02 9.68 71.23 0.69 -2.33 16 25 C -0.11 -2.49 9.32 22.25 0.21 -2.28 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 28 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 29 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.13 3.30 6.77 -2.91 -0.02 3.28 16 31 H 0.07 1.76 6.19 -2.39 -0.01 1.75 16 32 H 0.07 2.03 7.92 -2.39 -0.02 2.01 16 33 H 0.10 2.07 8.05 -2.39 -0.02 2.05 16 34 H 0.12 5.40 8.14 -2.40 -0.02 5.39 16 35 H 0.13 4.55 6.81 -2.39 -0.02 4.53 16 36 H 0.27 14.06 8.32 -92.71 -0.77 13.29 16 37 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.08 3.58 8.14 -2.38 -0.02 3.56 16 39 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.63 8.05 -2.39 -0.02 1.62 16 43 H 0.07 1.77 4.85 -2.39 -0.01 1.76 16 44 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -72.85 373.05 2.49 -70.36 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.99 Total: 24.88 kcal Atomic # 6 Polarization: -77.37 SS G_CDS: 4.77 Total: -72.60 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -0.70 Total: -82.21 kcal Atomic # 8 Polarization: -97.52 SS G_CDS: -4.33 Total: -101.85 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 114.78 SS G_CDS: -0.27 Total: 114.51 kcal Total: -72.85 2.49 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451088977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.600 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds