Wall clock time and date at job start Tue Mar 31 2020 14:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.96185 * 2 1 4 4 C 1.38265 * 120.14952 * 179.97438 * 3 2 1 5 5 C 1.38122 * 120.07845 * 0.02562 * 4 3 2 6 6 C 1.38892 * 119.92085 * 359.97438 * 5 4 3 7 7 N 1.39676 * 120.07590 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99995 * 261.55956 * 7 6 5 9 9 S 1.65597 * 120.00080 * 81.55724 * 7 6 5 10 10 O 1.42106 * 104.27785 * 156.34979 * 9 7 6 11 11 O 1.42097 * 104.28007 * 28.49150 * 9 7 6 12 12 C 1.81406 * 104.45118 * 272.42101 * 9 7 6 13 13 C 1.52994 * 109.47073 * 186.39733 * 12 9 7 14 14 C 1.50697 * 115.55216 * 293.97977 * 13 12 9 15 15 H 1.08000 * 120.00002 * 92.71304 * 14 13 12 16 16 C 1.37884 * 120.00212 * 272.44332 * 14 13 12 17 17 N 1.31511 * 119.99853 * 356.11866 * 16 14 13 18 18 Si 1.86802 * 120.00046 * 176.11686 * 16 14 13 19 19 H 1.48506 * 109.47135 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46966 * 119.99935 * 18 16 14 21 21 H 1.48491 * 109.47209 * 239.99945 * 18 16 14 22 22 C 1.52999 * 117.50272 * 79.65553 * 13 12 9 23 23 C 1.53006 * 117.49981 * 148.31303 * 13 12 9 24 24 C 1.38080 * 119.96617 * 180.22966 * 2 1 3 25 25 C 1.50706 * 120.03681 * 0.04523 * 24 2 1 26 26 H 1.08999 * 109.46591 * 90.00143 * 1 2 3 27 27 H 1.08999 * 109.46552 * 210.00056 * 1 2 3 28 28 H 1.08996 * 109.47122 * 330.00007 * 1 2 3 29 29 H 1.08002 * 119.92943 * 359.95680 * 3 2 1 30 30 H 1.08003 * 119.96273 * 180.02562 * 4 3 2 31 31 H 1.07993 * 120.04356 * 179.97438 * 5 4 3 32 32 H 1.08991 * 109.46913 * 269.99580 * 8 7 6 33 33 H 1.09001 * 109.46403 * 30.00109 * 8 7 6 34 34 H 1.09003 * 109.46923 * 149.99476 * 8 7 6 35 35 H 1.09000 * 109.46983 * 66.39361 * 12 9 7 36 36 H 1.09000 * 109.46993 * 306.39523 * 12 9 7 37 37 H 0.96995 * 119.99855 * 185.00460 * 17 16 14 38 38 H 1.09003 * 117.49952 * 215.00554 * 22 13 12 39 39 H 1.09001 * 117.49736 * 0.02562 * 22 13 12 40 40 H 1.09006 * 117.49346 * 359.97438 * 23 13 12 41 41 H 1.08997 * 117.49832 * 144.97160 * 23 13 12 42 42 H 1.08997 * 109.46942 * 275.65515 * 25 24 2 43 43 H 1.09003 * 109.46948 * 35.65308 * 25 24 2 44 44 H 1.08996 * 109.46820 * 155.65028 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2766 0.0098 0.0005 6 6 3.5860 -1.1953 0.0005 7 7 4.2867 -2.4036 0.0000 8 6 4.4926 -3.1304 -1.2553 9 16 4.8848 -3.0145 1.4182 10 8 5.0064 -4.4094 1.1752 11 8 4.0006 -2.5187 2.4139 12 6 6.5225 -2.2522 1.5845 13 6 7.2494 -2.8621 2.7847 14 6 6.6394 -2.5697 4.1313 15 1 5.9262 -3.2570 4.5618 16 6 6.9960 -1.4274 4.8164 17 7 7.9242 -0.6323 4.3308 18 14 6.1608 -1.0094 6.4341 19 1 5.1602 -2.0573 6.7599 20 1 7.1780 -0.9441 7.5140 21 1 5.4805 0.3051 6.3147 22 6 7.9112 -4.2278 2.5905 23 6 8.7738 -2.9688 2.7079 24 6 2.1967 -1.1962 -0.0048 25 6 1.4432 -2.5014 -0.0111 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6560 2.1325 -0.0007 30 1 4.1167 2.1402 0.0010 31 1 5.3565 0.0140 0.0005 32 1 3.6645 -3.8206 -1.4154 33 1 4.5400 -2.4214 -2.0819 34 1 5.4268 -3.6896 -1.2023 35 1 6.4099 -1.1785 1.7351 36 1 7.1013 -2.4333 0.6788 37 1 8.2267 0.1315 4.8465 38 1 7.9053 -4.9149 3.4368 39 1 7.8291 -4.6916 1.6076 40 1 9.2587 -2.6048 1.8020 41 1 9.3354 -2.8271 3.6312 42 1 1.1732 -2.7699 1.0102 43 1 0.5388 -2.3959 -0.6102 44 1 2.0727 -3.2822 -0.4378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451090444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:53 Heat of formation + Delta-G solvation = -21.605668 kcal Electronic energy + Delta-G solvation = -26595.150138 eV Core-core repulsion = 23026.445772 eV Total energy + Delta-G solvation = -3568.704366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.79060 -36.76889 -36.35359 -35.91770 -35.09138 -33.29943 -32.02016 -30.80847 -28.29776 -27.78038 -26.41161 -25.58715 -25.35670 -21.81197 -21.17473 -20.81993 -19.48271 -18.46136 -17.16909 -16.59680 -16.35396 -15.96655 -15.60017 -14.94054 -14.76393 -14.46652 -14.12157 -13.80600 -13.59484 -13.52403 -13.14160 -12.90202 -12.72574 -12.54985 -12.47841 -12.03162 -11.97752 -11.80033 -11.77950 -11.46523 -11.31333 -11.20390 -11.05254 -10.98476 -10.94752 -10.86451 -10.57762 -10.43893 -10.09911 -9.68817 -9.11275 -9.04550 -8.52994 -8.47928 -8.41170 -8.08145 -6.12334 -4.24661 0.88013 1.42760 1.47606 3.22977 3.28988 3.37617 3.46054 3.75245 4.38173 4.53591 4.77710 4.85909 4.94480 5.02421 5.11170 5.15064 5.21293 5.23154 5.32827 5.46933 5.55403 5.56397 5.66431 5.67884 5.73590 5.79616 5.81611 5.86717 5.90898 6.01342 6.12962 6.25340 6.32102 6.37038 6.49094 6.57795 6.60922 6.70953 6.73338 6.79337 7.00544 7.22809 7.29489 7.47512 7.80552 8.20126 8.81496 9.46869 10.94207 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.005446 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.461798 B = 5140.120549 C = 6074.658214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.116 4.116 4 C -0.112 4.112 5 C -0.123 4.123 6 C 0.153 3.847 7 N -0.970 5.970 8 C 0.096 3.904 9 S 2.598 3.402 10 O -0.965 6.965 11 O -0.937 6.937 12 C -0.553 4.553 13 C 0.036 3.964 14 C -0.512 4.512 15 H 0.068 0.932 16 C 0.080 3.920 17 N -0.874 5.874 18 Si 0.890 3.110 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.279 1.279 22 C -0.210 4.210 23 C -0.130 4.130 24 C -0.069 4.069 25 C -0.121 4.121 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 2.120 -13.106 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.130 4.130 5 C -0.144 4.144 6 C 0.060 3.940 7 N -0.800 5.800 8 C -0.048 4.048 9 S 2.698 3.302 10 O -0.955 6.955 11 O -0.927 6.927 12 C -0.686 4.686 13 C 0.033 3.967 14 C -0.550 4.550 15 H 0.086 0.914 16 C -0.124 4.124 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.205 1.205 22 C -0.247 4.247 23 C -0.169 4.169 24 C -0.072 4.072 25 C -0.178 4.178 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.598 1.649 -12.586 15.914 hybrid contribution 0.386 0.906 0.572 1.139 sum -9.212 2.555 -12.014 15.354 Atomic orbital electron populations 1.20793 0.91197 1.02972 1.01993 1.19633 0.95944 0.92240 1.00765 1.21020 0.94231 0.97288 1.00920 1.20962 0.94151 0.97623 1.00288 1.21467 1.00482 0.91891 1.00511 1.17046 0.89870 0.84795 1.02277 1.55726 1.68823 1.30836 1.24614 1.21490 1.01879 0.96043 0.85412 1.05699 0.77878 0.74709 0.71930 1.93499 1.87951 1.29900 1.84197 1.93549 1.62152 1.81028 1.55933 1.30065 1.19308 1.13342 1.05866 1.18313 0.93031 0.93781 0.91533 1.20559 1.26335 1.06792 1.01271 0.91401 1.24954 0.94426 0.95240 0.97827 1.70009 1.28075 1.15550 1.37339 0.86534 0.79793 0.79030 0.82906 1.19088 1.20880 1.20517 1.23223 1.08742 0.91941 1.00824 1.22501 0.94530 0.99047 1.00851 1.19942 0.92769 0.95338 0.99165 1.20868 0.99589 0.94391 1.02905 0.91364 0.91247 0.91545 0.86013 0.85621 0.85415 0.92416 0.91219 0.90638 0.85235 0.88214 0.92826 0.89502 0.90818 0.91713 0.89050 0.90505 0.91393 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.21 36.01 0.33 -0.78 16 2 C -0.09 -1.13 5.88 -104.65 -0.62 -1.74 16 3 C -0.12 -1.46 9.70 -39.55 -0.38 -1.84 16 4 C -0.11 -1.50 10.04 -39.61 -0.40 -1.89 16 5 C -0.12 -1.89 9.97 -39.38 -0.39 -2.28 16 6 C 0.15 2.50 4.44 -83.78 -0.37 2.13 16 7 N -0.97 -16.03 2.33 -65.39 -0.15 -16.18 16 8 C 0.10 1.22 9.72 59.85 0.58 1.80 16 9 S 2.60 54.82 5.10 -107.50 -0.55 54.28 16 10 O -0.96 -21.40 17.00 -57.54 -0.98 -22.38 16 11 O -0.94 -23.11 16.99 -57.54 -0.98 -24.08 16 12 C -0.55 -11.84 6.03 37.15 0.22 -11.62 16 13 C 0.04 0.89 1.45 -155.66 -0.23 0.66 16 14 C -0.51 -14.26 8.27 -34.44 -0.28 -14.54 16 15 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 16 C 0.08 2.22 5.42 -17.82 -0.10 2.13 16 17 N -0.87 -24.26 12.48 55.43 0.69 -23.57 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.21 -4.69 9.96 -26.70 -0.27 -4.95 16 23 C -0.13 -3.01 9.02 -26.69 -0.24 -3.25 16 24 C -0.07 -1.05 5.90 -104.42 -0.62 -1.67 16 25 C -0.12 -1.64 8.84 36.01 0.32 -1.32 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.68 6.82 -51.93 -0.35 0.32 16 28 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.13 1.84 7.88 -52.49 -0.41 1.43 16 32 H 0.06 0.68 6.83 -51.93 -0.35 0.32 16 33 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.07 0.91 7.72 -51.93 -0.40 0.51 16 35 H 0.13 2.87 7.97 -51.92 -0.41 2.45 16 36 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 37 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 38 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.09 2.25 8.07 -51.93 -0.42 1.83 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.71 7.03 -51.93 -0.37 0.35 16 44 H 0.07 0.93 5.57 -51.93 -0.29 0.64 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -33.16 373.67 -10.56 -43.72 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.77 Total: 4.94 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: -2.43 Total: -39.17 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.54 Total: -39.75 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.96 Total: -46.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 54.82 SS G_CDS: -0.55 Total: 54.28 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.16 -10.56 -43.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451090444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.114 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds