Wall clock time and date at job start Tue Mar 31 2020 14:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.96185 * 2 1 4 4 C 1.38265 * 120.14952 * 179.97438 * 3 2 1 5 5 C 1.38122 * 120.07845 * 0.02562 * 4 3 2 6 6 C 1.38892 * 119.92085 * 359.97438 * 5 4 3 7 7 N 1.39676 * 120.07590 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99995 * 261.55956 * 7 6 5 9 9 S 1.65597 * 120.00080 * 81.55724 * 7 6 5 10 10 O 1.42106 * 104.27785 * 156.34979 * 9 7 6 11 11 O 1.42097 * 104.28007 * 28.49150 * 9 7 6 12 12 C 1.81406 * 104.45118 * 272.42101 * 9 7 6 13 13 C 1.52994 * 109.47073 * 186.39733 * 12 9 7 14 14 C 1.50697 * 115.55216 * 293.97977 * 13 12 9 15 15 H 1.08000 * 120.00002 * 92.71304 * 14 13 12 16 16 C 1.37884 * 120.00212 * 272.44332 * 14 13 12 17 17 N 1.31511 * 119.99853 * 356.11866 * 16 14 13 18 18 Si 1.86802 * 120.00046 * 176.11686 * 16 14 13 19 19 H 1.48506 * 109.47135 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46966 * 119.99935 * 18 16 14 21 21 H 1.48491 * 109.47209 * 239.99945 * 18 16 14 22 22 C 1.52999 * 117.50272 * 79.65553 * 13 12 9 23 23 C 1.53006 * 117.49981 * 148.31303 * 13 12 9 24 24 C 1.38080 * 119.96617 * 180.22966 * 2 1 3 25 25 C 1.50706 * 120.03681 * 0.04523 * 24 2 1 26 26 H 1.08999 * 109.46591 * 90.00143 * 1 2 3 27 27 H 1.08999 * 109.46552 * 210.00056 * 1 2 3 28 28 H 1.08996 * 109.47122 * 330.00007 * 1 2 3 29 29 H 1.08002 * 119.92943 * 359.95680 * 3 2 1 30 30 H 1.08003 * 119.96273 * 180.02562 * 4 3 2 31 31 H 1.07993 * 120.04356 * 179.97438 * 5 4 3 32 32 H 1.08991 * 109.46913 * 269.99580 * 8 7 6 33 33 H 1.09001 * 109.46403 * 30.00109 * 8 7 6 34 34 H 1.09003 * 109.46923 * 149.99476 * 8 7 6 35 35 H 1.09000 * 109.46983 * 66.39361 * 12 9 7 36 36 H 1.09000 * 109.46993 * 306.39523 * 12 9 7 37 37 H 0.96995 * 119.99855 * 185.00460 * 17 16 14 38 38 H 1.09003 * 117.49952 * 215.00554 * 22 13 12 39 39 H 1.09001 * 117.49736 * 0.02562 * 22 13 12 40 40 H 1.09006 * 117.49346 * 359.97438 * 23 13 12 41 41 H 1.08997 * 117.49832 * 144.97160 * 23 13 12 42 42 H 1.08997 * 109.46942 * 275.65515 * 25 24 2 43 43 H 1.09003 * 109.46948 * 35.65308 * 25 24 2 44 44 H 1.08996 * 109.46820 * 155.65028 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2766 0.0098 0.0005 6 6 3.5860 -1.1953 0.0005 7 7 4.2867 -2.4036 0.0000 8 6 4.4926 -3.1304 -1.2553 9 16 4.8848 -3.0145 1.4182 10 8 5.0064 -4.4094 1.1752 11 8 4.0006 -2.5187 2.4139 12 6 6.5225 -2.2522 1.5845 13 6 7.2494 -2.8621 2.7847 14 6 6.6394 -2.5697 4.1313 15 1 5.9262 -3.2570 4.5618 16 6 6.9960 -1.4274 4.8164 17 7 7.9242 -0.6323 4.3308 18 14 6.1608 -1.0094 6.4341 19 1 5.1602 -2.0573 6.7599 20 1 7.1780 -0.9441 7.5140 21 1 5.4805 0.3051 6.3147 22 6 7.9112 -4.2278 2.5905 23 6 8.7738 -2.9688 2.7079 24 6 2.1967 -1.1962 -0.0048 25 6 1.4432 -2.5014 -0.0111 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6560 2.1325 -0.0007 30 1 4.1167 2.1402 0.0010 31 1 5.3565 0.0140 0.0005 32 1 3.6645 -3.8206 -1.4154 33 1 4.5400 -2.4214 -2.0819 34 1 5.4268 -3.6896 -1.2023 35 1 6.4099 -1.1785 1.7351 36 1 7.1013 -2.4333 0.6788 37 1 8.2267 0.1315 4.8465 38 1 7.9053 -4.9149 3.4368 39 1 7.8291 -4.6916 1.6076 40 1 9.2587 -2.6048 1.8020 41 1 9.3354 -2.8271 3.6312 42 1 1.1732 -2.7699 1.0102 43 1 0.5388 -2.3959 -0.6102 44 1 2.0727 -3.2822 -0.4378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451090444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:52 Heat of formation + Delta-G solvation = -40.885019 kcal Electronic energy + Delta-G solvation = -26595.986153 eV Core-core repulsion = 23026.445772 eV Total energy + Delta-G solvation = -3569.540381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85286 -38.61775 -38.07154 -37.12949 -36.78308 -34.30098 -34.10353 -31.83982 -29.98736 -28.81146 -27.55320 -27.37045 -26.55814 -23.04932 -22.94366 -21.88011 -21.30489 -19.92739 -18.68310 -18.39279 -17.66757 -17.31691 -16.75469 -16.71892 -16.46775 -16.04020 -15.61234 -15.11769 -14.95196 -14.63069 -14.52181 -13.92499 -13.85859 -13.80864 -13.66288 -13.56729 -13.45487 -13.20050 -13.14544 -12.98269 -12.89252 -12.82505 -12.71023 -12.55542 -12.49010 -12.26338 -12.03897 -11.99701 -11.88586 -11.54369 -11.02764 -10.55646 -10.40318 -9.87350 -9.53531 -9.47488 -8.21837 -6.38248 -0.71397 0.33927 0.42050 1.32028 1.36722 1.48121 1.78577 2.35911 2.69762 2.88654 3.03389 3.28294 3.37275 3.74941 3.90498 3.93063 4.03248 4.13739 4.18791 4.26383 4.43838 4.45683 4.50789 4.55306 4.60528 4.69562 4.73667 4.78055 4.79838 4.88589 4.89684 4.92607 4.95875 5.00308 5.14991 5.19430 5.34406 5.41125 5.45291 5.54388 5.61670 5.64941 5.67464 5.74752 6.18042 6.19709 6.68320 7.34244 8.84378 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.005446 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.461798 B = 5140.120549 C = 6074.658214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.145 4.145 6 C 0.126 3.874 7 N -0.959 5.959 8 C 0.084 3.916 9 S 2.611 3.389 10 O -0.982 6.982 11 O -0.982 6.982 12 C -0.550 4.550 13 C 0.003 3.997 14 C -0.532 4.532 15 H 0.045 0.955 16 C 0.043 3.957 17 N -0.890 5.890 18 Si 0.932 3.068 19 H -0.276 1.276 20 H -0.267 1.267 21 H -0.275 1.275 22 C -0.198 4.198 23 C -0.126 4.126 24 C -0.092 4.092 25 C -0.122 4.122 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.266 0.734 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.070 3.151 -14.776 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.166 4.166 6 C 0.033 3.967 7 N -0.792 5.792 8 C -0.059 4.059 9 S 2.711 3.289 10 O -0.973 6.973 11 O -0.972 6.972 12 C -0.683 4.683 13 C 0.000 4.000 14 C -0.569 4.569 15 H 0.063 0.937 16 C -0.160 4.160 17 N -0.526 5.526 18 Si 0.757 3.243 19 H -0.200 1.200 20 H -0.192 1.192 21 H -0.201 1.201 22 C -0.235 4.235 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.178 4.178 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.171 0.829 30 H 0.166 0.834 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.117 0.883 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.478 2.664 -14.247 17.885 hybrid contribution 0.614 0.612 1.021 1.340 sum -9.863 3.276 -13.226 16.821 Atomic orbital electron populations 1.20870 0.88782 1.03648 1.03561 1.20088 0.97816 0.91768 0.99417 1.21443 0.94089 0.98462 0.99418 1.21316 0.94940 0.97845 0.99491 1.21651 1.00801 0.92507 1.01627 1.17326 0.90622 0.84662 1.04053 1.55203 1.68357 1.31349 1.24247 1.21835 1.02728 0.96823 0.84507 1.05006 0.77382 0.74180 0.72283 1.93460 1.88096 1.30984 1.84716 1.93481 1.63387 1.81649 1.58715 1.29942 1.20044 1.12251 1.06051 1.18439 0.94099 0.95973 0.91453 1.20706 1.26254 1.06757 1.03184 0.93675 1.25493 0.94998 0.95269 1.00266 1.70045 1.28605 1.15801 1.38192 0.85898 0.79199 0.78492 0.80703 1.20031 1.19187 1.20082 1.23271 1.07034 0.91204 1.01997 1.22440 0.93594 0.99573 1.00867 1.20237 0.92622 0.96706 0.99874 1.20903 1.00755 0.93798 1.02341 0.89199 0.91413 0.90087 0.82853 0.83439 0.85445 0.91452 0.88532 0.89867 0.86417 0.84722 0.92496 0.89995 0.88251 0.89397 0.91217 0.92277 0.88349 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.21 71.24 0.66 -1.24 16 2 C -0.09 -2.20 5.88 -19.88 -0.12 -2.32 16 3 C -0.12 -2.63 9.70 22.29 0.22 -2.41 16 4 C -0.12 -2.96 10.04 22.25 0.22 -2.74 16 5 C -0.15 -4.37 9.97 22.40 0.22 -4.15 16 6 C 0.13 4.06 4.44 38.21 0.17 4.23 16 7 N -0.96 -31.20 2.33 -360.80 -0.84 -32.04 16 8 C 0.08 2.01 9.72 127.77 1.24 3.25 16 9 S 2.61 111.02 5.10 -56.49 -0.29 110.73 16 10 O -0.98 -43.51 17.00 -127.65 -2.17 -45.68 16 11 O -0.98 -50.06 16.99 -127.65 -2.17 -52.23 16 12 C -0.55 -23.44 6.03 71.98 0.43 -23.01 16 13 C 0.00 0.13 1.45 -52.93 -0.08 0.05 16 14 C -0.53 -30.30 8.27 25.60 0.21 -30.09 16 15 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 16 C 0.04 2.39 5.42 84.66 0.46 2.85 16 17 N -0.89 -49.72 12.48 21.45 0.27 -49.46 16 18 Si 0.93 45.16 29.54 68.60 2.03 47.19 16 19 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 C -0.20 -8.70 9.96 30.62 0.30 -8.39 16 23 C -0.13 -5.75 9.02 30.62 0.28 -5.47 16 24 C -0.09 -2.69 5.90 -19.73 -0.12 -2.81 16 25 C -0.12 -3.20 8.84 71.24 0.63 -2.57 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.17 6.82 -2.39 -0.02 1.16 16 28 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 29 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.13 3.67 7.88 -2.91 -0.02 3.64 16 32 H 0.07 1.48 6.83 -2.39 -0.02 1.47 16 33 H 0.10 1.79 8.05 -2.39 -0.02 1.77 16 34 H 0.08 1.85 7.72 -2.39 -0.02 1.83 16 35 H 0.12 5.28 7.97 -2.39 -0.02 5.27 16 36 H 0.13 4.61 8.09 -2.39 -0.02 4.59 16 37 H 0.27 14.02 8.32 -92.71 -0.77 13.25 16 38 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 40 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 41 H 0.07 3.46 8.07 -2.39 -0.02 3.44 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.10 1.88 7.03 -2.39 -0.02 1.86 16 44 H 0.06 1.71 5.57 -2.39 -0.01 1.70 16 Total: -1.00 -72.68 373.67 2.55 -70.13 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.98 Total: 26.15 kcal Atomic # 6 Polarization: -79.54 SS G_CDS: 4.74 Total: -74.80 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -0.57 Total: -81.49 kcal Atomic # 8 Polarization: -93.57 SS G_CDS: -4.34 Total: -97.91 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 111.02 SS G_CDS: -0.29 Total: 110.73 kcal Total: -72.68 2.55 -70.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451090444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.250 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds