Wall clock time and date at job start Tue Mar 31 2020 13:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99472 * 2 1 4 4 C 1.38215 * 120.00027 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99427 * 359.76733 * 4 3 2 6 6 C 1.38214 * 120.00200 * 0.46557 * 5 4 3 7 7 C 1.50701 * 119.99702 * 179.78853 * 6 5 4 8 8 C 1.52993 * 109.47067 * 269.72283 * 7 6 5 9 9 N 1.46498 * 109.47472 * 180.02562 * 8 7 6 10 10 S 1.65601 * 120.00315 * 165.27589 * 9 8 7 11 11 O 1.42102 * 104.27710 * 180.79984 * 10 9 8 12 12 O 1.42101 * 104.27317 * 308.65327 * 10 9 8 13 13 C 1.81389 * 104.44936 * 64.72563 * 10 9 8 14 14 C 1.53007 * 109.47309 * 173.81201 * 13 10 9 15 15 C 1.50700 * 115.54854 * 65.19124 * 14 13 10 16 16 H 1.07999 * 120.00034 * 264.78379 * 15 14 13 17 17 C 1.37876 * 119.99863 * 84.78912 * 15 14 13 18 18 N 1.31516 * 120.00071 * 352.22587 * 17 15 14 19 19 Si 1.86803 * 119.99795 * 172.22501 * 17 15 14 20 20 H 1.48495 * 109.47397 * 60.00211 * 19 17 15 21 21 H 1.48501 * 109.46768 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 299.99664 * 19 17 15 23 23 C 1.53002 * 117.49610 * 279.52810 * 14 13 10 24 24 C 1.52995 * 117.49864 * 210.86683 * 14 13 10 25 25 C 1.38210 * 120.00458 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47205 * 270.01517 * 1 2 3 27 27 H 1.08997 * 109.47683 * 30.02330 * 1 2 3 28 28 H 1.09003 * 109.46925 * 150.02835 * 1 2 3 29 29 H 1.07999 * 120.00414 * 359.97438 * 3 2 1 30 30 H 1.07990 * 120.00483 * 179.97438 * 4 3 2 31 31 H 1.08003 * 119.99453 * 180.25161 * 5 4 3 32 32 H 1.09004 * 109.46683 * 149.72283 * 7 6 5 33 33 H 1.08999 * 109.47123 * 29.72697 * 7 6 5 34 34 H 1.08997 * 109.47469 * 60.00041 * 8 7 6 35 35 H 1.08999 * 109.47488 * 300.00191 * 8 7 6 36 36 H 0.97001 * 119.99696 * 345.00454 * 9 8 7 37 37 H 1.09006 * 109.47337 * 293.80721 * 13 10 9 38 38 H 1.09002 * 109.47632 * 53.81361 * 13 10 9 39 39 H 0.97003 * 120.00122 * 185.02862 * 18 17 15 40 40 H 1.08996 * 117.49740 * 359.97438 * 23 14 13 41 41 H 1.09000 * 117.49983 * 145.01990 * 23 14 13 42 42 H 1.09000 * 117.49768 * 214.97541 * 24 14 13 43 43 H 1.09001 * 117.49907 * 359.97251 * 24 14 13 44 44 H 1.08003 * 119.99555 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1976 0.0005 5 6 4.2716 0.0002 0.0059 6 6 3.5806 -1.1968 0.0011 7 6 4.3343 -2.5019 0.0021 8 6 4.5894 -2.9446 -1.4399 9 7 5.3215 -4.2136 -1.4390 10 16 5.4197 -5.1139 -2.8254 11 8 6.1718 -6.2587 -2.4472 12 8 4.0726 -5.2337 -3.2616 13 6 6.3702 -4.0779 -3.9715 14 6 6.6637 -4.8672 -5.2489 15 6 5.4590 -5.2381 -6.0749 16 1 4.9982 -6.2072 -5.9529 17 6 4.9454 -4.3403 -6.9866 18 7 5.4068 -3.1095 -7.0290 19 14 3.5940 -4.8722 -8.1614 20 1 2.4077 -5.3129 -7.3845 21 1 3.2188 -3.7305 -9.0337 22 1 4.0816 -5.9962 -9.0006 23 6 7.8293 -5.8578 -5.2152 24 6 7.9605 -4.5471 -5.9949 25 6 2.1981 -1.1969 0.0005 26 1 -0.3634 0.0003 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.6582 2.1327 -0.0004 30 1 4.1203 2.1328 0.0001 31 1 5.3517 0.0003 0.0105 32 1 3.7452 -3.2611 0.5166 33 1 5.2866 -2.3711 0.5160 34 1 5.1784 -2.1854 -1.9544 35 1 3.6370 -3.0755 -1.9538 36 1 5.7520 -4.5245 -0.6273 37 1 5.7934 -3.1868 -4.2195 38 1 7.3092 -3.7840 -3.5023 39 1 4.9966 -2.4578 -7.6189 40 1 8.3872 -5.9468 -4.2831 41 1 7.7250 -6.7775 -5.7908 42 1 7.9425 -4.6051 -7.0833 43 1 8.6044 -3.7738 -5.5760 44 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451153479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:31 Heat of formation + Delta-G solvation = -41.340713 kcal Electronic energy + Delta-G solvation = -25024.336167 eV Core-core repulsion = 21454.776025 eV Total energy + Delta-G solvation = -3569.560142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.61638 -36.74530 -36.32040 -35.89682 -35.03507 -33.14508 -32.03147 -31.92554 -28.21062 -28.12804 -26.96963 -25.43992 -23.47101 -22.08228 -21.20587 -20.60898 -19.65362 -18.60934 -16.95642 -16.50790 -16.46340 -15.95867 -15.70703 -15.10359 -14.88411 -14.70054 -14.30613 -14.16289 -13.89025 -13.73967 -13.29961 -13.13681 -13.03942 -12.56631 -12.43302 -11.94116 -11.84328 -11.83480 -11.63111 -11.38349 -11.26233 -11.14709 -11.03498 -11.01658 -10.89527 -10.84659 -10.58479 -10.44741 -10.10678 -9.71403 -9.20800 -8.95274 -8.87452 -8.69119 -8.55018 -8.07864 -6.12736 -4.23298 1.06847 1.25744 1.29617 3.33618 3.35454 3.42209 3.46071 3.64705 4.38551 4.54701 4.61535 4.67668 4.78920 4.97376 5.01975 5.04127 5.11363 5.16825 5.19738 5.23697 5.37262 5.42890 5.50559 5.54002 5.59328 5.66048 5.85332 5.86730 5.98297 5.99504 6.05143 6.19858 6.28478 6.36525 6.38522 6.47076 6.53754 6.62292 6.72957 6.91348 6.99310 7.23362 7.30638 7.39902 7.81589 8.21629 8.81909 9.47838 10.94946 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.003644 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.708319 B = 7682.145831 C = 8651.999928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.076 4.076 7 C -0.086 4.086 8 C 0.121 3.879 9 N -1.135 6.135 10 S 2.607 3.393 11 O -0.975 6.975 12 O -0.950 6.950 13 C -0.554 4.554 14 C 0.044 3.956 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.083 3.917 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.208 4.208 24 C -0.142 4.142 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.409 0.591 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 8.740 15.498 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.133 4.133 5 C -0.138 4.138 6 C -0.077 4.077 7 C -0.125 4.125 8 C -0.005 4.005 9 N -0.891 5.891 10 S 2.704 3.296 11 O -0.966 6.966 12 O -0.940 6.940 13 C -0.687 4.687 14 C 0.042 3.958 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.181 4.181 25 C -0.132 4.132 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.241 0.759 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.623 8.108 15.087 17.507 hybrid contribution -0.090 0.554 -0.457 0.724 sum -3.713 8.662 14.631 17.403 Atomic orbital electron populations 1.20803 0.91244 1.02994 1.02169 1.19919 0.96091 0.93152 0.99408 1.21022 0.94330 0.97427 1.01593 1.21113 0.94291 0.97972 0.99961 1.21068 0.99923 0.91963 1.00890 1.19754 0.93699 0.94694 0.99523 1.20785 1.00521 0.94279 0.96901 1.21219 0.97261 0.84950 0.97087 1.55997 1.68645 1.35609 1.28869 1.05118 0.75899 0.74857 0.73677 1.93503 1.74208 1.47046 1.81808 1.93534 1.34144 1.85237 1.81055 1.29979 1.12118 1.14734 1.11901 1.18268 0.90042 0.95895 0.91638 1.20489 1.12123 1.02061 1.20732 0.91393 1.24943 0.96156 0.94736 0.96387 1.69967 1.40319 1.02639 1.38098 0.86660 0.82459 0.78342 0.80836 1.19453 1.21124 1.19874 1.23198 1.05113 0.94655 1.01586 1.22552 1.00875 0.96025 0.98626 1.21004 0.93592 0.97823 1.00801 0.91303 0.91576 0.91309 0.86314 0.86113 0.85963 0.90121 0.90282 0.91668 0.89974 0.75912 0.84882 0.88274 0.92678 0.90685 0.89532 0.89601 0.91551 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.09 -0.89 5.88 -104.62 -0.62 -1.51 16 3 C -0.13 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 5 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 6 C -0.08 -0.84 5.13 -104.63 -0.54 -1.38 16 7 C -0.09 -0.90 5.49 -27.89 -0.15 -1.06 16 8 C 0.12 1.63 6.11 -4.05 -0.02 1.61 16 9 N -1.13 -16.62 5.89 -10.62 -0.06 -16.68 16 10 S 2.61 52.64 5.19 -107.50 -0.56 52.08 16 11 O -0.98 -21.39 18.08 -57.54 -1.04 -22.43 16 12 O -0.95 -22.77 17.18 -57.54 -0.99 -23.76 16 13 C -0.55 -11.63 5.92 37.16 0.22 -11.41 16 14 C 0.04 1.07 1.32 -155.66 -0.21 0.87 16 15 C -0.52 -14.21 8.18 -34.44 -0.28 -14.49 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C 0.08 2.27 5.38 -17.82 -0.10 2.17 16 18 N -0.87 -24.13 12.98 55.43 0.72 -23.41 16 19 Si 0.89 21.45 29.55 -169.99 -5.02 16.43 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.21 -4.60 9.96 -26.69 -0.27 -4.86 16 24 C -0.14 -3.24 9.49 -26.69 -0.25 -3.49 16 25 C -0.11 -1.27 9.36 -39.59 -0.37 -1.64 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 32 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.24 7.71 -51.93 -0.40 0.84 16 36 H 0.41 4.88 8.62 -34.47 -0.30 4.58 16 37 H 0.13 2.90 8.14 -51.92 -0.42 2.48 16 38 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 39 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 42 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -33.25 383.99 -11.55 -44.80 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.99 Total: 7.77 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: -3.39 Total: -40.58 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.66 Total: -40.09 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -2.03 Total: -46.19 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 52.64 SS G_CDS: -0.56 Total: 52.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.25 -11.55 -44.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451153479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.457 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds