Wall clock time and date at job start Tue Mar 31 2020 14:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 120.00108 * 2 1 4 4 C 1.38217 * 119.99871 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99983 * 359.74839 * 4 3 2 6 6 C 1.38213 * 120.00020 * 0.50556 * 5 4 3 7 7 C 1.50700 * 119.99831 * 179.76644 * 6 5 4 8 8 H 1.08996 * 109.46611 * 199.72431 * 7 6 5 9 9 C 1.53002 * 109.46845 * 79.72536 * 7 6 5 10 10 N 1.46494 * 109.47155 * 319.72525 * 7 6 5 11 11 S 1.65603 * 120.00271 * 215.00207 * 10 7 6 12 12 O 1.42108 * 104.27347 * 308.93209 * 11 10 7 13 13 O 1.42095 * 104.27847 * 181.07155 * 11 10 7 14 14 C 1.81398 * 104.44856 * 64.99669 * 11 10 7 15 15 C 1.53002 * 109.47141 * 185.98452 * 14 11 10 16 16 C 1.50700 * 115.54826 * 294.74815 * 15 14 11 17 17 H 1.08002 * 119.99801 * 99.51484 * 16 15 14 18 18 C 1.37876 * 119.99938 * 279.24295 * 16 15 14 19 19 N 1.31510 * 120.00557 * 355.38571 * 18 16 15 20 20 Si 1.86804 * 119.99602 * 175.39210 * 18 16 15 21 21 H 1.48501 * 109.47487 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47136 * 119.99998 * 20 18 16 23 23 H 1.48506 * 109.46861 * 239.99753 * 20 18 16 24 24 C 1.52998 * 117.52005 * 80.45015 * 15 14 11 25 25 C 1.52999 * 117.49879 * 149.08222 * 15 14 11 26 26 C 1.38212 * 119.99931 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47308 * 270.02231 * 1 2 3 28 28 H 1.08997 * 109.46977 * 30.02835 * 1 2 3 29 29 H 1.09002 * 109.46688 * 150.02247 * 1 2 3 30 30 H 1.07997 * 120.00101 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.99578 * 180.02562 * 4 3 2 32 32 H 1.08000 * 119.99695 * 180.27477 * 5 4 3 33 33 H 1.09005 * 109.46958 * 60.00638 * 9 7 6 34 34 H 1.09009 * 109.46603 * 179.97438 * 9 7 6 35 35 H 1.08989 * 109.47304 * 299.99774 * 9 7 6 36 36 H 0.97005 * 120.00456 * 35.00010 * 10 7 6 37 37 H 1.09003 * 109.47284 * 65.98433 * 14 11 10 38 38 H 1.09004 * 109.47414 * 305.98455 * 14 11 10 39 39 H 0.96998 * 120.00547 * 185.00479 * 19 18 16 40 40 H 1.08992 * 117.50142 * 214.97090 * 24 15 14 41 41 H 1.09006 * 117.49769 * 359.97438 * 24 15 14 42 42 H 1.09003 * 117.49931 * 359.97438 * 25 15 14 43 43 H 1.08997 * 117.49847 * 144.97366 * 25 15 14 44 44 H 1.08003 * 120.00090 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0063 6 6 3.5806 -1.1970 0.0010 7 6 4.3341 -2.5021 0.0020 8 1 3.6796 -3.2997 -0.3492 9 6 4.8056 -2.8177 1.4230 10 7 5.4949 -2.3965 -0.8854 11 16 5.9872 -3.7105 -1.7648 12 8 6.0901 -4.7548 -0.8065 13 8 7.1302 -3.2503 -2.4725 14 6 4.6159 -4.0293 -2.9086 15 6 4.8870 -5.3210 -3.6826 16 6 6.0750 -5.2863 -4.6091 17 1 7.0154 -5.7166 -4.2977 18 6 5.9599 -4.7103 -5.8565 19 7 4.7919 -4.2728 -6.2735 20 14 7.4630 -4.5515 -6.9542 21 1 8.6468 -5.1155 -6.2573 22 1 7.2326 -5.2939 -8.2194 23 1 7.7046 -3.1181 -7.2583 24 6 4.5775 -6.6443 -2.9799 25 6 3.6777 -6.1523 -4.1153 26 6 2.1980 -1.1970 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1326 0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 -0.0001 0.0112 33 1 3.9418 -2.8964 2.0833 34 1 5.3502 -3.7620 1.4237 35 1 5.4600 -2.0201 1.7742 36 1 5.9752 -1.5568 -0.9580 37 1 4.5259 -3.1985 -3.6085 38 1 3.6886 -4.1314 -2.3448 39 1 4.6953 -3.9342 -7.1774 40 1 5.2331 -7.4899 -3.1877 41 1 4.1810 -6.5950 -1.9657 42 1 2.6889 -5.7793 -3.8483 43 1 3.7412 -6.6739 -5.0703 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452106860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:37 Heat of formation + Delta-G solvation = -35.704665 kcal Electronic energy + Delta-G solvation = -25777.391613 eV Core-core repulsion = 22208.075869 eV Total energy + Delta-G solvation = -3569.315744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.77039 -36.75615 -36.50613 -36.00108 -35.07187 -32.59161 -32.03694 -31.14858 -28.98553 -28.18502 -27.02511 -25.45082 -23.75518 -22.26317 -21.19076 -20.32903 -19.74610 -18.65784 -17.32963 -16.63207 -16.43148 -15.91760 -15.25728 -15.03921 -14.80079 -14.61546 -14.30325 -14.03589 -13.79671 -13.47969 -13.41174 -13.21469 -13.07718 -12.49376 -12.38272 -12.01626 -11.92752 -11.81763 -11.60437 -11.43807 -11.25469 -11.16390 -11.09882 -11.01908 -10.93398 -10.74003 -10.54039 -10.43864 -10.11264 -9.69019 -9.31692 -9.02444 -8.89038 -8.69611 -8.55646 -8.08039 -6.12238 -4.24094 1.04321 1.24927 1.29664 3.29926 3.38233 3.39649 3.46559 3.67901 4.38756 4.41740 4.61746 4.67048 4.77068 4.95210 4.99161 5.05330 5.13796 5.18900 5.23152 5.28410 5.34345 5.41921 5.47844 5.52450 5.65027 5.68679 5.84603 5.90755 5.94078 6.00878 6.11720 6.26227 6.27436 6.37265 6.38119 6.46883 6.56859 6.63627 6.72933 6.89969 7.00163 7.22592 7.25787 7.43103 7.81532 8.21034 8.81989 9.47706 10.94807 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.004014 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.701857 B = 6974.126972 C = 7226.170046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.079 4.079 7 C 0.192 3.808 8 H 0.090 0.910 9 C -0.165 4.165 10 N -1.126 6.126 11 S 2.606 3.394 12 O -0.970 6.970 13 O -0.951 6.951 14 C -0.553 4.553 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.069 0.931 18 C 0.080 3.920 19 N -0.875 5.875 20 Si 0.892 3.108 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.280 1.280 24 C -0.207 4.207 25 C -0.139 4.139 26 C -0.113 4.113 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.410 0.590 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.262 0.738 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 9.517 13.676 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.132 4.132 5 C -0.133 4.133 6 C -0.081 4.081 7 C 0.085 3.915 8 H 0.107 0.893 9 C -0.224 4.224 10 N -0.883 5.883 11 S 2.703 3.297 12 O -0.960 6.960 13 O -0.941 6.941 14 C -0.686 4.686 15 C 0.038 3.962 16 C -0.551 4.551 17 H 0.087 0.913 18 C -0.125 4.125 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.205 1.205 24 C -0.245 4.245 25 C -0.178 4.178 26 C -0.131 4.131 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.244 0.756 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.232 9.056 13.693 17.939 hybrid contribution 0.156 0.837 -1.065 1.363 sum -7.076 9.892 12.628 17.533 Atomic orbital electron populations 1.20797 0.91179 1.02944 1.02214 1.19887 0.96061 0.93067 0.99461 1.21021 0.94286 0.97433 1.01506 1.21104 0.94292 0.97892 0.99885 1.20919 0.99963 0.91903 1.00511 1.20013 0.93709 0.94895 0.99447 1.19556 0.86110 0.94471 0.91393 0.89253 1.22314 1.01908 1.03363 0.94834 1.56209 1.42060 1.30899 1.59107 1.05199 0.76947 0.72900 0.74656 1.93497 1.86516 1.56159 1.59807 1.93549 1.46685 1.79723 1.74157 1.29982 1.15281 1.09988 1.13340 1.18286 0.97533 0.83689 0.96664 1.20578 0.95279 1.39294 0.99931 0.91331 1.24964 0.96031 0.93669 0.97810 1.70000 1.22904 1.40657 1.17453 0.86517 0.83452 0.78210 0.79940 1.19104 1.20951 1.20537 1.23159 1.05291 1.00111 0.95893 1.22537 0.93435 1.04429 0.97390 1.20925 0.93234 0.97938 1.01036 0.91240 0.91594 0.91346 0.86272 0.86038 0.86013 0.91745 0.90223 0.92127 0.75589 0.84921 0.88503 0.92814 0.89569 0.90713 0.91688 0.89432 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.08 -0.87 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.11 -1.29 9.15 -39.58 -0.36 -1.66 16 6 C -0.08 -0.95 4.95 -104.62 -0.52 -1.47 16 7 C 0.19 2.50 2.88 -69.08 -0.20 2.30 16 8 H 0.09 1.11 6.91 -51.93 -0.36 0.76 16 9 C -0.17 -1.96 9.49 37.16 0.35 -1.61 16 10 N -1.13 -17.02 5.31 -5.89 -0.03 -17.05 16 11 S 2.61 52.50 5.12 -107.50 -0.55 51.95 16 12 O -0.97 -20.78 17.11 -57.54 -0.98 -21.76 16 13 O -0.95 -22.76 17.74 -57.54 -1.02 -23.78 16 14 C -0.55 -11.63 5.86 37.16 0.22 -11.42 16 15 C 0.04 0.99 1.34 -155.66 -0.21 0.78 16 16 C -0.51 -14.14 8.16 -34.44 -0.28 -14.43 16 17 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 18 C 0.08 2.21 5.44 -17.82 -0.10 2.11 16 19 N -0.87 -24.29 12.85 55.43 0.71 -23.58 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.21 -4.53 9.96 -26.73 -0.27 -4.79 16 25 C -0.14 -3.16 9.40 -26.73 -0.25 -3.41 16 26 C -0.11 -1.26 9.33 -39.58 -0.37 -1.63 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.12 1.23 6.83 -52.49 -0.36 0.87 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.08 7.43 -51.92 -0.39 0.69 16 35 H 0.06 0.66 8.14 -51.94 -0.42 0.24 16 36 H 0.41 5.50 7.06 -34.47 -0.24 5.26 16 37 H 0.13 2.95 8.14 -51.92 -0.42 2.53 16 38 H 0.10 1.70 7.24 -51.92 -0.38 1.32 16 39 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 41 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 44 H 0.12 1.20 8.04 -52.48 -0.42 0.78 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -32.92 377.66 -10.98 -43.90 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.76 Total: 8.34 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: -3.02 Total: -40.41 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.68 Total: -40.63 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -2.00 Total: -45.55 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 52.50 SS G_CDS: -0.55 Total: 51.95 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.92 -10.98 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452106860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.199 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds