Wall clock time and date at job start Tue Mar 31 2020 14:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 120.00108 * 2 1 4 4 C 1.38217 * 119.99871 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99983 * 359.74839 * 4 3 2 6 6 C 1.38213 * 120.00020 * 0.50556 * 5 4 3 7 7 C 1.50700 * 119.99831 * 179.76644 * 6 5 4 8 8 H 1.08996 * 109.46611 * 199.72431 * 7 6 5 9 9 C 1.53002 * 109.46845 * 79.72536 * 7 6 5 10 10 N 1.46494 * 109.47155 * 319.72525 * 7 6 5 11 11 S 1.65603 * 120.00271 * 215.00207 * 10 7 6 12 12 O 1.42108 * 104.27347 * 308.93209 * 11 10 7 13 13 O 1.42095 * 104.27847 * 181.07155 * 11 10 7 14 14 C 1.81398 * 104.44856 * 64.99669 * 11 10 7 15 15 C 1.53002 * 109.47141 * 185.98452 * 14 11 10 16 16 C 1.50700 * 115.54826 * 294.74815 * 15 14 11 17 17 H 1.08002 * 119.99801 * 99.51484 * 16 15 14 18 18 C 1.37876 * 119.99938 * 279.24295 * 16 15 14 19 19 N 1.31510 * 120.00557 * 355.38571 * 18 16 15 20 20 Si 1.86804 * 119.99602 * 175.39210 * 18 16 15 21 21 H 1.48501 * 109.47487 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47136 * 119.99998 * 20 18 16 23 23 H 1.48506 * 109.46861 * 239.99753 * 20 18 16 24 24 C 1.52998 * 117.52005 * 80.45015 * 15 14 11 25 25 C 1.52999 * 117.49879 * 149.08222 * 15 14 11 26 26 C 1.38212 * 119.99931 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47308 * 270.02231 * 1 2 3 28 28 H 1.08997 * 109.46977 * 30.02835 * 1 2 3 29 29 H 1.09002 * 109.46688 * 150.02247 * 1 2 3 30 30 H 1.07997 * 120.00101 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.99578 * 180.02562 * 4 3 2 32 32 H 1.08000 * 119.99695 * 180.27477 * 5 4 3 33 33 H 1.09005 * 109.46958 * 60.00638 * 9 7 6 34 34 H 1.09009 * 109.46603 * 179.97438 * 9 7 6 35 35 H 1.08989 * 109.47304 * 299.99774 * 9 7 6 36 36 H 0.97005 * 120.00456 * 35.00010 * 10 7 6 37 37 H 1.09003 * 109.47284 * 65.98433 * 14 11 10 38 38 H 1.09004 * 109.47414 * 305.98455 * 14 11 10 39 39 H 0.96998 * 120.00547 * 185.00479 * 19 18 16 40 40 H 1.08992 * 117.50142 * 214.97090 * 24 15 14 41 41 H 1.09006 * 117.49769 * 359.97438 * 24 15 14 42 42 H 1.09003 * 117.49931 * 359.97438 * 25 15 14 43 43 H 1.08997 * 117.49847 * 144.97366 * 25 15 14 44 44 H 1.08003 * 120.00090 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0063 6 6 3.5806 -1.1970 0.0010 7 6 4.3341 -2.5021 0.0020 8 1 3.6796 -3.2997 -0.3492 9 6 4.8056 -2.8177 1.4230 10 7 5.4949 -2.3965 -0.8854 11 16 5.9872 -3.7105 -1.7648 12 8 6.0901 -4.7548 -0.8065 13 8 7.1302 -3.2503 -2.4725 14 6 4.6159 -4.0293 -2.9086 15 6 4.8870 -5.3210 -3.6826 16 6 6.0750 -5.2863 -4.6091 17 1 7.0154 -5.7166 -4.2977 18 6 5.9599 -4.7103 -5.8565 19 7 4.7919 -4.2728 -6.2735 20 14 7.4630 -4.5515 -6.9542 21 1 8.6468 -5.1155 -6.2573 22 1 7.2326 -5.2939 -8.2194 23 1 7.7046 -3.1181 -7.2583 24 6 4.5775 -6.6443 -2.9799 25 6 3.6777 -6.1523 -4.1153 26 6 2.1980 -1.1970 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1326 0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 -0.0001 0.0112 33 1 3.9418 -2.8964 2.0833 34 1 5.3502 -3.7620 1.4237 35 1 5.4600 -2.0201 1.7742 36 1 5.9752 -1.5568 -0.9580 37 1 4.5259 -3.1985 -3.6085 38 1 3.6886 -4.1314 -2.3448 39 1 4.6953 -3.9342 -7.1774 40 1 5.2331 -7.4899 -3.1877 41 1 4.1810 -6.5950 -1.9657 42 1 2.6889 -5.7793 -3.8483 43 1 3.7412 -6.6739 -5.0703 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452106860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:36 Heat of formation + Delta-G solvation = -55.821506 kcal Electronic energy + Delta-G solvation = -25778.263944 eV Core-core repulsion = 22208.075869 eV Total energy + Delta-G solvation = -3570.188076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58722 -38.57106 -38.01030 -37.24394 -36.76422 -34.10126 -33.33792 -32.12930 -29.98460 -29.83885 -27.71847 -27.49580 -24.67478 -23.06283 -22.96787 -21.53791 -21.24289 -20.20705 -18.68636 -18.35069 -17.72353 -16.96745 -16.83197 -16.60699 -16.19154 -15.95518 -15.58446 -15.37742 -14.96809 -14.78103 -14.35773 -14.27958 -13.93835 -13.79697 -13.67805 -13.54001 -13.12184 -13.00423 -12.94665 -12.91979 -12.86784 -12.67421 -12.60152 -12.50589 -12.43267 -12.22798 -11.95602 -11.88819 -11.65309 -11.47830 -10.98756 -10.62460 -10.51798 -9.88962 -9.68978 -9.47770 -8.20203 -6.35802 -0.53102 0.42856 0.50516 1.34578 1.39679 1.50619 2.00069 2.38290 2.84643 2.94914 3.06328 3.34845 3.46287 3.58907 3.88221 3.98354 4.03649 4.11187 4.24282 4.29462 4.34493 4.41025 4.51867 4.55113 4.60136 4.63101 4.78419 4.84960 4.88113 4.93441 4.99052 4.99344 5.07549 5.21095 5.22675 5.32040 5.36033 5.44263 5.58465 5.61944 5.70078 5.71497 5.72071 6.08290 6.14431 6.21778 6.71255 7.37101 8.86484 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.004014 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.701857 B = 6974.126972 C = 7226.170046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.120 4.120 5 C -0.131 4.131 6 C -0.091 4.091 7 C 0.185 3.815 8 H 0.095 0.905 9 C -0.164 4.164 10 N -1.112 6.112 11 S 2.624 3.376 12 O -0.984 6.984 13 O -0.996 6.996 14 C -0.552 4.552 15 C 0.006 3.994 16 C -0.531 4.531 17 H 0.049 0.951 18 C 0.041 3.959 19 N -0.893 5.893 20 Si 0.933 3.067 21 H -0.273 1.273 22 H -0.269 1.269 23 H -0.277 1.277 24 C -0.193 4.193 25 C -0.136 4.136 26 C -0.126 4.126 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.419 0.581 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 10.581 14.830 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.138 4.138 5 C -0.149 4.149 6 C -0.092 4.092 7 C 0.078 3.922 8 H 0.113 0.887 9 C -0.223 4.223 10 N -0.872 5.872 11 S 2.721 3.279 12 O -0.974 6.974 13 O -0.986 6.986 14 C -0.684 4.684 15 C 0.004 3.996 16 C -0.569 4.569 17 H 0.067 0.933 18 C -0.161 4.161 19 N -0.529 5.529 20 Si 0.758 3.242 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.203 1.203 24 C -0.230 4.230 25 C -0.175 4.175 26 C -0.144 4.144 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.255 0.745 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.729 10.111 14.841 19.967 hybrid contribution 0.572 0.549 -1.348 1.563 sum -8.157 10.660 13.493 19.033 Atomic orbital electron populations 1.20839 0.89522 1.03491 1.03173 1.20224 0.97420 0.92887 0.98729 1.21360 0.94401 0.98341 1.00667 1.21390 0.94763 0.98321 0.99295 1.21107 1.00461 0.92281 1.01064 1.19938 0.94086 0.94355 1.00839 1.19809 0.85347 0.95636 0.91359 0.88661 1.22297 1.02777 1.02577 0.94601 1.55763 1.42999 1.29975 1.58503 1.04367 0.76081 0.73212 0.74204 1.93473 1.86640 1.57444 1.59840 1.93484 1.49060 1.80652 1.75414 1.29868 1.17464 1.07754 1.13319 1.18417 0.97320 0.85957 0.97885 1.20766 0.95842 1.39266 1.01013 0.93314 1.25513 0.98034 0.93715 0.98880 1.70040 1.23809 1.41258 1.17824 0.85880 0.80875 0.78289 0.79116 1.19755 1.19455 1.20259 1.23213 1.04353 0.98551 0.96892 1.22480 0.94155 1.03940 0.96905 1.21149 0.93062 0.98981 1.01257 0.90002 0.90670 0.91213 0.84191 0.84184 0.85542 0.89575 0.92031 0.91423 0.74506 0.86434 0.84966 0.92585 0.90004 0.88036 0.89457 0.91572 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 2 C -0.09 -1.68 5.88 -19.87 -0.12 -1.80 16 3 C -0.13 -2.25 9.70 22.27 0.22 -2.04 16 4 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 5 C -0.13 -2.75 9.15 22.27 0.20 -2.54 16 6 C -0.09 -2.02 4.95 -19.87 -0.10 -2.11 16 7 C 0.19 4.51 2.88 44.25 0.13 4.64 16 8 H 0.10 2.18 6.91 -2.39 -0.02 2.16 16 9 C -0.16 -3.62 9.49 71.98 0.68 -2.94 16 10 N -1.11 -32.65 5.31 -172.53 -0.92 -33.57 16 11 S 2.62 105.12 5.12 -56.49 -0.29 104.83 16 12 O -0.98 -41.57 17.11 -127.65 -2.18 -43.75 16 13 O -1.00 -48.53 17.74 -127.65 -2.26 -50.80 16 14 C -0.55 -22.79 5.86 71.98 0.42 -22.37 16 15 C 0.01 0.31 1.34 -52.93 -0.07 0.24 16 16 C -0.53 -29.75 8.16 25.60 0.21 -29.54 16 17 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 18 C 0.04 2.29 5.44 84.66 0.46 2.76 16 19 N -0.89 -49.82 12.85 21.45 0.28 -49.54 16 20 Si 0.93 44.81 29.54 68.60 2.03 46.84 16 21 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 24 C -0.19 -8.21 9.96 30.59 0.30 -7.90 16 25 C -0.14 -6.07 9.40 30.60 0.29 -5.78 16 26 C -0.13 -2.56 9.33 22.27 0.21 -2.35 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 30 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.13 2.41 6.83 -2.91 -0.02 2.39 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.59 7.43 -2.38 -0.02 1.57 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.42 10.97 7.06 -96.74 -0.68 10.29 16 37 H 0.12 5.23 8.14 -2.39 -0.02 5.21 16 38 H 0.13 4.36 7.24 -2.39 -0.02 4.34 16 39 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 40 H 0.08 3.50 8.14 -2.39 -0.02 3.49 16 41 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 42 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 43 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.14 2.32 8.04 -2.91 -0.02 2.29 16 Total: -1.00 -70.47 377.66 0.73 -69.74 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.31 Total: 30.73 kcal Atomic # 6 Polarization: -78.24 SS G_CDS: 3.77 Total: -74.47 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -0.64 Total: -83.11 kcal Atomic # 8 Polarization: -90.10 SS G_CDS: -4.45 Total: -94.55 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 105.12 SS G_CDS: -0.29 Total: 104.83 kcal Total: -70.47 0.73 -69.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452106860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.915 kcal (2) G-P(sol) polarization free energy of solvation -70.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds