Wall clock time and date at job start Tue Mar 31 2020 14:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00400 * 2 1 4 4 C 1.52996 * 109.47190 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47148 * 65.00200 * 4 3 2 6 6 C 1.37099 * 119.99925 * 270.00100 * 5 4 3 7 7 H 1.07998 * 119.99836 * 143.44995 * 6 5 4 8 8 C 1.38945 * 120.00072 * 323.44670 * 6 5 4 9 9 N 1.31411 * 120.00112 * 159.73423 * 8 6 5 10 10 Si 1.86801 * 119.99798 * 339.73824 * 8 6 5 11 11 H 1.48502 * 109.47369 * 95.46134 * 10 8 6 12 12 H 1.48506 * 109.46900 * 215.46257 * 10 8 6 13 13 H 1.48503 * 109.47218 * 335.45666 * 10 8 6 14 14 C 1.34783 * 120.00381 * 89.99357 * 5 4 3 15 15 O 1.21296 * 119.99485 * 4.85443 * 14 5 4 16 16 C 1.50700 * 120.00163 * 184.57536 * 14 5 4 17 17 S 1.81399 * 109.46910 * 175.17165 * 16 14 5 18 18 C 1.76199 * 103.00077 * 184.62176 * 17 16 14 19 19 C 1.39002 * 120.07654 * 355.43994 * 18 17 16 20 20 C 1.38060 * 119.91742 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.96118 * 180.02562 * 20 19 18 22 22 C 1.38327 * 120.07980 * 0.02562 * 20 19 18 23 23 C 1.38284 * 120.16079 * 359.95478 * 22 20 19 24 24 C 1.38099 * 120.07911 * 359.76174 * 23 22 20 25 25 C 1.50703 * 120.04049 * 180.25394 * 24 23 22 26 26 H 1.08998 * 109.47869 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47172 * 300.00494 * 1 2 3 28 28 H 1.09008 * 109.46887 * 59.99475 * 1 2 3 29 29 H 1.09000 * 109.47253 * 59.99730 * 3 2 1 30 30 H 1.08999 * 109.47084 * 300.00263 * 3 2 1 31 31 H 1.08994 * 109.47450 * 304.99846 * 4 3 2 32 32 H 1.09004 * 109.46909 * 184.99786 * 4 3 2 33 33 H 0.97004 * 119.99675 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.46930 * 295.17389 * 16 14 5 35 35 H 1.08997 * 109.46799 * 55.17252 * 16 14 5 36 36 H 1.07993 * 120.03920 * 359.97438 * 19 18 17 37 37 H 1.08997 * 109.46643 * 89.99993 * 21 20 19 38 38 H 1.09002 * 109.47071 * 210.00441 * 21 20 19 39 39 H 1.09004 * 109.46526 * 329.99917 * 21 20 19 40 40 H 1.07996 * 119.91768 * 179.97438 * 22 20 19 41 41 H 1.07999 * 119.95610 * 180.02562 * 23 22 20 42 42 H 1.08994 * 109.47375 * 270.28311 * 25 24 23 43 43 H 1.09004 * 109.46892 * 30.28123 * 25 24 23 44 44 H 1.09004 * 109.47151 * 150.28016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0979 -0.7992 -1.3346 7 1 3.8389 -1.3091 -2.2507 8 6 4.5539 -1.5246 -0.2408 9 7 4.3055 -2.8123 -0.1565 10 14 5.5201 -0.6694 1.1100 11 1 4.5993 -0.2850 2.2098 12 1 6.5599 -1.5910 1.6342 13 1 6.1693 0.5476 0.5597 14 6 4.2633 1.3327 -2.3201 15 8 4.2413 2.5415 -2.2212 16 6 4.6172 0.6907 -3.6368 17 16 4.8076 1.9749 -4.9038 18 6 5.0776 1.0434 -6.3748 19 6 5.1918 -0.3404 -6.3120 20 6 5.4039 -1.0670 -7.4666 21 6 5.5273 -2.5675 -7.3997 22 6 5.5031 -0.4194 -8.6849 23 6 5.3896 0.9572 -8.7513 24 6 5.1716 1.6899 -7.6012 25 6 5.0423 3.1896 -7.6753 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5140 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8508 0.5684 0.8426 32 1 3.9785 2.1764 0.0902 33 1 4.6235 -3.3186 0.6074 34 1 5.5527 0.1410 -3.5331 35 1 3.8233 0.0045 -3.9314 36 1 5.1156 -0.8465 -5.3610 37 1 4.5416 -3.0185 -7.5138 38 1 6.1806 -2.9143 -8.2003 39 1 5.9491 -2.8546 -6.4365 40 1 5.6694 -0.9903 -9.5864 41 1 5.4672 1.4594 -9.7042 42 1 6.0264 3.6450 -7.5658 43 1 4.6172 3.4704 -8.6389 44 1 4.3896 3.5380 -6.8748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457180750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:00 Heat of formation + Delta-G solvation = -47.057094 kcal Electronic energy + Delta-G solvation = -25127.273709 eV Core-core repulsion = 21557.465686 eV Total energy + Delta-G solvation = -3569.808022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.21116 -39.03363 -37.09850 -34.92172 -33.78667 -32.04239 -31.26591 -30.32428 -29.23851 -28.14111 -25.83394 -24.77712 -24.73820 -22.80571 -22.55888 -20.94027 -19.12736 -17.37694 -16.67388 -16.29911 -15.98054 -15.70859 -15.52684 -15.37946 -14.83377 -14.75439 -14.31689 -14.13364 -13.96008 -13.67225 -13.22179 -13.08177 -12.83450 -12.69476 -12.61767 -12.41371 -12.19137 -11.84269 -11.81178 -11.67677 -11.53906 -11.41948 -11.26107 -10.93561 -10.86338 -10.81614 -10.23390 -9.91609 -9.64547 -9.44648 -9.28513 -9.11500 -8.73758 -8.45207 -7.92324 -7.01700 -6.47985 -4.07225 1.36687 1.45731 1.82258 2.84324 3.02345 3.18691 3.24795 3.52560 3.76020 4.10095 4.22013 4.41591 4.86727 4.89823 4.95385 5.09460 5.25463 5.37870 5.53218 5.56099 5.58271 5.66567 5.67429 5.69508 5.70780 5.71613 5.77455 5.82742 5.84912 5.90583 6.01177 6.02861 6.04723 6.07788 6.21226 6.29194 6.37340 6.39737 6.60608 6.68478 7.06039 7.24468 7.76092 7.99710 8.15577 8.86338 9.24367 9.53479 10.62632 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.003835 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.034178 B = 7299.628202 C = 7964.278362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.055 3.945 4 C 0.102 3.898 5 N -0.446 5.446 6 C -0.339 4.339 7 H 0.103 0.897 8 C 0.077 3.923 9 N -0.853 5.853 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.492 3.508 15 O -0.587 6.587 16 C -0.117 4.117 17 S -0.050 6.050 18 C -0.090 4.090 19 C -0.131 4.131 20 C -0.072 4.072 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.104 4.104 24 C -0.079 4.079 25 C -0.115 4.115 26 H 0.081 0.919 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.274 0.726 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 4.029 -10.563 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.023 4.023 4 C -0.022 4.022 5 N -0.166 5.166 6 C -0.465 4.465 7 H 0.120 0.880 8 C -0.131 4.131 9 N -0.487 5.487 10 Si 0.702 3.298 11 H -0.200 1.200 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.280 3.720 15 O -0.473 6.473 16 C -0.268 4.268 17 S 0.195 5.805 18 C -0.204 4.204 19 C -0.155 4.155 20 C -0.074 4.074 21 C -0.172 4.172 22 C -0.153 4.153 23 C -0.123 4.123 24 C -0.085 4.085 25 C -0.172 4.172 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.146 0.854 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.671 5.466 -10.061 11.469 hybrid contribution 0.214 -1.245 0.696 1.442 sum -0.457 4.221 -9.365 10.282 Atomic orbital electron populations 1.22664 0.82972 1.02141 0.98747 1.88232 1.17721 1.26415 1.95007 1.22862 0.94711 0.85382 0.99378 1.21759 0.92389 0.99150 0.88858 1.43525 1.56972 1.07100 1.08972 1.18933 1.45770 0.78820 1.03015 0.87975 1.25175 0.95506 0.95075 0.97320 1.69746 1.40964 1.07610 1.30415 0.87008 0.80305 0.80232 0.82261 1.20021 1.21503 1.18646 1.19344 0.80804 0.86412 0.85445 1.90582 1.57846 1.13915 1.84917 1.23646 1.06999 1.00577 0.95553 1.85818 1.88129 1.10790 0.95722 1.22086 1.03579 0.96663 0.98045 1.21212 1.02793 0.92474 0.99051 1.19806 0.98726 0.95967 0.92911 1.20807 1.02235 0.91240 1.02913 1.20941 1.03012 0.94378 0.97007 1.20881 1.00277 0.93873 0.97290 1.19463 1.01698 0.96049 0.91281 1.20778 1.02616 0.91149 1.02663 0.90043 0.95180 0.94879 0.93742 0.93329 0.90762 0.89371 0.91544 0.86976 0.87517 0.85365 0.91108 0.91705 0.91209 0.86322 0.86038 0.91016 0.91581 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.54 10.18 -35.23 -0.36 -7.90 16 3 C 0.05 1.07 6.28 37.16 0.23 1.30 16 4 C 0.10 2.22 4.66 -4.04 -0.02 2.21 16 5 N -0.45 -10.53 2.18 -114.81 -0.25 -10.78 16 6 C -0.34 -8.57 8.69 -14.93 -0.13 -8.70 16 7 H 0.10 2.69 7.07 -52.49 -0.37 2.32 16 8 C 0.08 2.01 5.35 -17.47 -0.09 1.92 16 9 N -0.85 -23.17 13.96 55.50 0.77 -22.39 16 10 Si 0.87 20.26 24.84 -169.99 -4.22 16.04 16 11 H -0.27 -6.14 6.71 56.52 0.38 -5.76 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 14 C 0.49 11.25 7.64 -10.98 -0.08 11.16 16 15 O -0.59 -14.29 15.43 5.54 0.09 -14.20 16 16 C -0.12 -2.30 3.52 36.01 0.13 -2.17 16 17 S -0.05 -0.90 19.27 -107.50 -2.07 -2.98 16 18 C -0.09 -1.45 6.11 -39.04 -0.24 -1.69 16 19 C -0.13 -2.04 8.99 -39.36 -0.35 -2.39 16 20 C -0.07 -0.98 5.88 -104.65 -0.62 -1.59 16 21 C -0.12 -1.28 10.01 36.01 0.36 -0.92 16 22 C -0.13 -1.61 9.70 -39.53 -0.38 -1.99 16 23 C -0.10 -1.27 9.70 -39.62 -0.38 -1.65 16 24 C -0.08 -1.10 5.90 -104.41 -0.62 -1.72 16 25 C -0.12 -1.38 9.57 36.01 0.34 -1.04 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.69 2.97 -51.93 -0.15 1.53 16 32 H 0.09 1.84 7.36 -51.93 -0.38 1.46 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.11 2.15 7.79 -51.93 -0.40 1.74 16 35 H 0.11 2.04 7.11 -51.93 -0.37 1.68 16 36 H 0.13 2.03 5.92 -52.49 -0.31 1.72 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 44 H 0.07 0.99 6.79 -51.93 -0.35 0.63 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -29.87 370.47 -7.77 -37.64 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.57 Total: 4.64 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.74 Total: -5.66 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.52 Total: -33.17 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.27 Total: -22.10 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.22 Total: 16.04 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.07 Total: -2.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.87 -7.77 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.422 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds