Wall clock time and date at job start Tue Mar 31 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00400 * 2 1 4 4 C 1.52996 * 109.47190 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47148 * 65.00200 * 4 3 2 6 6 C 1.37099 * 119.99925 * 270.00100 * 5 4 3 7 7 H 1.07998 * 119.99836 * 143.44995 * 6 5 4 8 8 C 1.38945 * 120.00072 * 323.44670 * 6 5 4 9 9 N 1.31411 * 120.00112 * 159.73423 * 8 6 5 10 10 Si 1.86801 * 119.99798 * 339.73824 * 8 6 5 11 11 H 1.48502 * 109.47369 * 95.46134 * 10 8 6 12 12 H 1.48506 * 109.46900 * 215.46257 * 10 8 6 13 13 H 1.48503 * 109.47218 * 335.45666 * 10 8 6 14 14 C 1.34783 * 120.00381 * 89.99357 * 5 4 3 15 15 O 1.21296 * 119.99485 * 4.85443 * 14 5 4 16 16 C 1.50700 * 120.00163 * 184.57536 * 14 5 4 17 17 S 1.81399 * 109.46910 * 175.17165 * 16 14 5 18 18 C 1.76199 * 103.00077 * 184.62176 * 17 16 14 19 19 C 1.39002 * 120.07654 * 355.43994 * 18 17 16 20 20 C 1.38060 * 119.91742 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.96118 * 180.02562 * 20 19 18 22 22 C 1.38327 * 120.07980 * 0.02562 * 20 19 18 23 23 C 1.38284 * 120.16079 * 359.95478 * 22 20 19 24 24 C 1.38099 * 120.07911 * 359.76174 * 23 22 20 25 25 C 1.50703 * 120.04049 * 180.25394 * 24 23 22 26 26 H 1.08998 * 109.47869 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47172 * 300.00494 * 1 2 3 28 28 H 1.09008 * 109.46887 * 59.99475 * 1 2 3 29 29 H 1.09000 * 109.47253 * 59.99730 * 3 2 1 30 30 H 1.08999 * 109.47084 * 300.00263 * 3 2 1 31 31 H 1.08994 * 109.47450 * 304.99846 * 4 3 2 32 32 H 1.09004 * 109.46909 * 184.99786 * 4 3 2 33 33 H 0.97004 * 119.99675 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.46930 * 295.17389 * 16 14 5 35 35 H 1.08997 * 109.46799 * 55.17252 * 16 14 5 36 36 H 1.07993 * 120.03920 * 359.97438 * 19 18 17 37 37 H 1.08997 * 109.46643 * 89.99993 * 21 20 19 38 38 H 1.09002 * 109.47071 * 210.00441 * 21 20 19 39 39 H 1.09004 * 109.46526 * 329.99917 * 21 20 19 40 40 H 1.07996 * 119.91768 * 179.97438 * 22 20 19 41 41 H 1.07999 * 119.95610 * 180.02562 * 23 22 20 42 42 H 1.08994 * 109.47375 * 270.28311 * 25 24 23 43 43 H 1.09004 * 109.46892 * 30.28123 * 25 24 23 44 44 H 1.09004 * 109.47151 * 150.28016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0979 -0.7992 -1.3346 7 1 3.8389 -1.3091 -2.2507 8 6 4.5539 -1.5246 -0.2408 9 7 4.3055 -2.8123 -0.1565 10 14 5.5201 -0.6694 1.1100 11 1 4.5993 -0.2850 2.2098 12 1 6.5599 -1.5910 1.6342 13 1 6.1693 0.5476 0.5597 14 6 4.2633 1.3327 -2.3201 15 8 4.2413 2.5415 -2.2212 16 6 4.6172 0.6907 -3.6368 17 16 4.8076 1.9749 -4.9038 18 6 5.0776 1.0434 -6.3748 19 6 5.1918 -0.3404 -6.3120 20 6 5.4039 -1.0670 -7.4666 21 6 5.5273 -2.5675 -7.3997 22 6 5.5031 -0.4194 -8.6849 23 6 5.3896 0.9572 -8.7513 24 6 5.1716 1.6899 -7.6012 25 6 5.0423 3.1896 -7.6753 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5140 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8508 0.5684 0.8426 32 1 3.9785 2.1764 0.0902 33 1 4.6235 -3.3186 0.6074 34 1 5.5527 0.1410 -3.5331 35 1 3.8233 0.0045 -3.9314 36 1 5.1156 -0.8465 -5.3610 37 1 4.5416 -3.0185 -7.5138 38 1 6.1806 -2.9143 -8.2003 39 1 5.9491 -2.8546 -6.4365 40 1 5.6694 -0.9903 -9.5864 41 1 5.4672 1.4594 -9.7042 42 1 6.0264 3.6450 -7.5658 43 1 4.6172 3.4704 -8.6389 44 1 4.3896 3.5380 -6.8748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:59 Heat of formation + Delta-G solvation = -63.326829 kcal Electronic energy + Delta-G solvation = -25127.979217 eV Core-core repulsion = 21557.465686 eV Total energy + Delta-G solvation = -3570.513531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85291 -40.25403 -38.66003 -36.77511 -34.78964 -34.00790 -32.58536 -31.75132 -30.27836 -29.65172 -27.28320 -26.62707 -25.74392 -24.17314 -23.86899 -22.08784 -20.95290 -19.08924 -18.37358 -17.73233 -17.63175 -17.14674 -16.72764 -16.58099 -16.48915 -16.26392 -15.89272 -15.54855 -15.14745 -15.05114 -14.66413 -14.51756 -14.12755 -14.06953 -13.87025 -13.68636 -13.57307 -13.37852 -13.17356 -13.10948 -12.75390 -12.64621 -12.57279 -12.50257 -12.37199 -12.02442 -11.92737 -11.72012 -11.14932 -11.01031 -10.71210 -10.57923 -10.49393 -9.83793 -9.50161 -8.48531 -8.35888 -6.09180 0.28310 0.38664 0.43106 1.17111 1.29255 1.39384 1.46343 1.69326 2.18039 2.49068 2.71453 2.87306 3.07624 3.85705 3.85960 3.91735 4.02106 4.08141 4.10846 4.13967 4.32692 4.33962 4.37860 4.42221 4.49804 4.52657 4.56956 4.61250 4.71423 4.74766 4.79614 4.80824 4.82697 4.86933 5.00639 5.14949 5.32642 5.36396 5.37482 5.57500 5.65619 5.99691 6.05998 6.17543 6.36093 6.91139 7.30393 7.62980 8.65476 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.003835 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.034178 B = 7299.628202 C = 7964.278362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.059 3.941 4 C 0.092 3.908 5 N -0.454 5.454 6 C -0.331 4.331 7 H 0.080 0.920 8 C 0.042 3.958 9 N -0.889 5.889 10 Si 0.922 3.078 11 H -0.259 1.259 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.489 3.511 15 O -0.601 6.601 16 C -0.108 4.108 17 S -0.067 6.067 18 C -0.111 4.111 19 C -0.152 4.152 20 C -0.082 4.082 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.100 4.100 24 C -0.087 4.087 25 C -0.114 4.114 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.278 0.722 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 4.744 -12.213 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.018 4.018 4 C -0.031 4.031 5 N -0.175 5.175 6 C -0.459 4.459 7 H 0.098 0.902 8 C -0.163 4.163 9 N -0.526 5.526 10 Si 0.749 3.251 11 H -0.186 1.186 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.277 3.723 15 O -0.488 6.488 16 C -0.259 4.259 17 S 0.177 5.823 18 C -0.224 4.224 19 C -0.176 4.176 20 C -0.084 4.084 21 C -0.171 4.171 22 C -0.145 4.145 23 C -0.119 4.119 24 C -0.093 4.093 25 C -0.171 4.171 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.171 0.829 41 H 0.175 0.825 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.626 6.178 -11.713 13.257 hybrid contribution 0.161 -1.463 1.031 1.797 sum -0.464 4.715 -10.682 11.686 Atomic orbital electron populations 1.22861 0.80500 1.03120 1.00438 1.88160 1.20585 1.27395 1.95346 1.22810 0.92989 0.85239 1.00774 1.21928 0.94420 0.99063 0.87694 1.43614 1.57437 1.06511 1.09915 1.18754 1.45271 0.79596 1.02254 0.90191 1.25664 0.96074 0.95456 0.99146 1.69810 1.42458 1.08788 1.31538 0.86233 0.79316 0.79064 0.80536 1.18553 1.21198 1.19149 1.19783 0.79991 0.86314 0.86179 1.90557 1.58309 1.14503 1.85386 1.23441 1.06547 1.00932 0.94947 1.85693 1.89139 1.10813 0.96679 1.22085 1.06003 0.96735 0.97566 1.21234 1.04290 0.92651 0.99446 1.20119 0.98342 0.97117 0.92816 1.20842 1.03081 0.89843 1.03285 1.21383 1.00870 0.94755 0.97483 1.21311 0.98607 0.94029 0.97942 1.19826 1.01219 0.97279 0.91010 1.20816 1.02848 0.89862 1.03550 0.89537 0.92506 0.94043 0.90203 0.93864 0.91499 0.88619 0.91236 0.87253 0.87896 0.87085 0.90500 0.89242 0.92345 0.82912 0.82457 0.90312 0.88779 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.61 10.18 -148.98 -1.52 -18.12 16 3 C 0.06 2.27 6.28 71.98 0.45 2.72 16 4 C 0.09 3.98 4.66 86.38 0.40 4.38 16 5 N -0.45 -21.86 2.18 -635.54 -1.39 -23.25 16 6 C -0.33 -17.30 8.69 84.04 0.73 -16.57 16 7 H 0.08 4.45 7.07 -2.91 -0.02 4.43 16 8 C 0.04 2.20 5.35 84.93 0.45 2.65 16 9 N -0.89 -49.36 13.96 21.66 0.30 -49.06 16 10 Si 0.92 41.93 24.84 68.60 1.70 43.63 16 11 H -0.26 -11.14 6.71 99.48 0.67 -10.47 16 12 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 C 0.49 22.92 7.64 87.66 0.67 23.59 16 15 O -0.60 -29.67 15.43 -3.08 -0.05 -29.71 16 16 C -0.11 -4.46 3.52 71.24 0.25 -4.21 16 17 S -0.07 -2.50 19.27 -56.49 -1.09 -3.59 16 18 C -0.11 -3.59 6.11 22.62 0.14 -3.45 16 19 C -0.15 -4.83 8.99 22.41 0.20 -4.63 16 20 C -0.08 -2.12 5.88 -19.89 -0.12 -2.23 16 21 C -0.11 -2.39 10.01 71.24 0.71 -1.68 16 22 C -0.12 -2.62 9.70 22.30 0.22 -2.40 16 23 C -0.10 -2.10 9.70 22.25 0.22 -1.88 16 24 C -0.09 -2.31 5.90 -19.73 -0.12 -2.43 16 25 C -0.11 -2.53 9.57 71.24 0.68 -1.85 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 2.99 2.97 -2.39 -0.01 2.99 16 32 H 0.10 3.95 7.36 -2.38 -0.02 3.93 16 33 H 0.28 14.43 8.31 -92.70 -0.77 13.66 16 34 H 0.11 4.47 7.79 -2.39 -0.02 4.45 16 35 H 0.10 4.23 7.11 -2.39 -0.02 4.22 16 36 H 0.11 3.79 5.92 -2.91 -0.02 3.77 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 39 H 0.06 1.34 8.08 -2.38 -0.02 1.32 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 44 H 0.06 1.49 6.79 -2.39 -0.02 1.47 16 Total: -1.00 -65.36 370.47 5.06 -60.30 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.96 Total: 25.71 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 6.14 Total: -5.91 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.09 Total: -72.31 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -1.56 Total: -47.84 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.70 Total: 43.63 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -1.09 Total: -3.59 kcal Total: -65.36 5.06 -60.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.030 kcal (2) G-P(sol) polarization free energy of solvation -65.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds