Wall clock time and date at job start Tue Mar 31 2020 14:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00145 * 2 1 4 4 C 1.52995 * 109.46976 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47211 * 64.99699 * 4 3 2 6 6 C 1.37092 * 120.00146 * 269.99459 * 5 4 3 7 7 H 1.08007 * 119.99651 * 141.16839 * 6 5 4 8 8 C 1.38949 * 120.00562 * 321.17391 * 6 5 4 9 9 N 1.31409 * 119.99846 * 340.55652 * 8 6 5 10 10 Si 1.86796 * 120.00261 * 160.55611 * 8 6 5 11 11 H 1.48500 * 109.47163 * 59.99900 * 10 8 6 12 12 H 1.48500 * 109.47447 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47328 * 300.00125 * 10 8 6 14 14 C 1.34782 * 119.99694 * 90.00328 * 5 4 3 15 15 O 1.21288 * 119.99966 * 356.40620 * 14 5 4 16 16 C 1.50695 * 119.99845 * 176.40942 * 14 5 4 17 17 S 1.81394 * 109.47152 * 185.64536 * 16 14 5 18 18 C 1.76206 * 103.00353 * 184.64582 * 17 16 14 19 19 C 1.38993 * 120.07264 * 354.62593 * 18 17 16 20 20 C 1.38067 * 119.91471 * 180.02562 * 19 18 17 21 21 C 1.38323 * 120.07905 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.91945 * 179.97438 * 21 20 19 23 23 C 1.38282 * 120.16286 * 0.02562 * 21 20 19 24 24 C 1.38106 * 120.08104 * 359.67400 * 23 21 20 25 25 C 1.50699 * 120.04367 * 180.29705 * 24 23 21 26 26 H 1.08997 * 109.46698 * 59.99786 * 1 2 3 27 27 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46811 * 300.00214 * 1 2 3 29 29 H 1.08995 * 109.46871 * 60.00065 * 3 2 1 30 30 H 1.08995 * 109.46933 * 299.99835 * 3 2 1 31 31 H 1.09001 * 109.47162 * 304.99630 * 4 3 2 32 32 H 1.08995 * 109.47512 * 185.00123 * 4 3 2 33 33 H 0.97000 * 120.00222 * 185.02718 * 9 8 6 34 34 H 1.09003 * 109.47407 * 65.64483 * 16 14 5 35 35 H 1.09004 * 109.47014 * 305.64296 * 16 14 5 36 36 H 1.07996 * 120.04580 * 0.02562 * 19 18 17 37 37 H 1.07996 * 119.95897 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.46915 * 89.99731 * 22 21 20 39 39 H 1.08996 * 109.47347 * 209.99845 * 22 21 20 40 40 H 1.09003 * 109.47174 * 330.00322 * 22 21 20 41 41 H 1.07996 * 119.95993 * 179.97438 * 23 21 20 42 42 H 1.08990 * 109.47092 * 270.32546 * 25 24 23 43 43 H 1.09001 * 109.46660 * 30.32889 * 25 24 23 44 44 H 1.09003 * 109.46505 * 150.32250 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0969 -0.7987 -1.3369 7 1 3.8024 -1.3122 -2.2403 8 6 4.5986 -1.5195 -0.2601 9 7 5.3008 -0.9101 0.6685 10 14 4.2747 -3.3547 -0.1324 11 1 4.8433 -4.0415 -1.3199 12 1 4.9121 -3.8854 1.0993 13 1 2.8105 -3.5962 -0.0749 14 6 4.2616 1.3336 -2.3218 15 8 4.0923 2.5334 -2.2682 16 6 4.7915 0.7030 -3.5837 17 16 5.2329 2.0026 -4.7698 18 6 5.6916 1.0898 -6.2056 19 6 5.7525 -0.2980 -6.1586 20 6 6.1129 -1.0099 -7.2854 21 6 6.4135 -0.3436 -8.4597 22 6 6.8069 -1.1242 -9.6872 23 6 6.3549 1.0371 -8.5097 24 6 5.9893 1.7555 -7.3884 25 6 5.9192 3.2598 -7.4458 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8514 0.5682 0.8410 32 1 3.9786 2.1763 0.0889 33 1 5.7124 -1.4239 1.3808 34 1 4.0260 0.0597 -4.0177 35 1 5.6753 0.1093 -3.3498 36 1 5.5184 -0.8188 -5.2420 37 1 6.1609 -2.0882 -7.2496 38 1 5.9152 -1.3654 -10.2657 39 1 7.4845 -0.5261 -10.2965 40 1 7.3056 -2.0459 -9.3874 41 1 6.5907 1.5539 -9.4282 42 1 6.8896 3.6790 -7.1802 43 1 5.6521 3.5727 -8.4551 44 1 5.1652 3.6153 -6.7435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457182305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:07 Heat of formation + Delta-G solvation = -58.367180 kcal Electronic energy + Delta-G solvation = -24893.508058 eV Core-core repulsion = 21323.209593 eV Total energy + Delta-G solvation = -3570.298465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.21139 -38.70135 -36.96266 -34.75976 -33.44654 -32.14090 -31.65452 -30.21229 -28.08781 -27.31235 -26.59353 -25.79508 -24.69512 -22.24427 -21.83995 -20.73237 -19.23076 -17.62203 -16.63607 -16.26993 -15.60206 -15.50331 -15.42897 -14.94601 -14.62372 -14.52278 -14.29726 -14.17920 -14.01586 -13.66811 -13.21353 -13.17188 -12.81730 -12.69485 -12.38656 -12.18252 -12.00285 -11.90268 -11.68110 -11.43382 -11.27984 -11.16451 -11.04464 -10.99825 -10.86080 -10.72928 -10.42996 -10.13477 -9.59359 -9.25524 -9.18253 -8.99231 -8.63713 -8.60800 -7.55900 -6.91549 -6.39914 -4.09985 1.35502 1.48931 1.91089 2.93559 3.12907 3.21600 3.26341 3.74702 3.76518 4.10437 4.48838 4.69296 4.81599 4.92132 4.99460 5.01257 5.28937 5.34447 5.52155 5.56137 5.64591 5.70120 5.71692 5.73599 5.77394 5.78981 5.83282 5.91966 5.97679 6.03905 6.06406 6.10483 6.26321 6.29339 6.30350 6.42253 6.59074 6.65044 6.67695 7.06793 7.21565 7.41921 7.76711 7.95114 8.29596 9.03783 9.37878 9.81538 10.63097 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.003629 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.335986 B = 7713.815601 C = 8807.521575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.053 3.947 4 C 0.115 3.885 5 N -0.419 5.419 6 C -0.332 4.332 7 H 0.084 0.916 8 C 0.056 3.944 9 N -0.862 5.862 10 Si 0.917 3.083 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.482 3.518 15 O -0.595 6.595 16 C -0.116 4.116 17 S -0.049 6.049 18 C -0.099 4.099 19 C -0.128 4.128 20 C -0.107 4.107 21 C -0.102 4.102 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.069 4.069 25 C -0.116 4.116 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.272 0.728 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 0.155 -12.049 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.025 4.025 4 C -0.009 4.009 5 N -0.137 5.137 6 C -0.459 4.459 7 H 0.102 0.898 8 C -0.151 4.151 9 N -0.498 5.498 10 Si 0.743 3.257 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.194 1.194 14 C 0.270 3.730 15 O -0.481 6.481 16 C -0.267 4.267 17 S 0.196 5.804 18 C -0.212 4.212 19 C -0.152 4.152 20 C -0.126 4.126 21 C -0.105 4.105 22 C -0.166 4.166 23 C -0.127 4.127 24 C -0.075 4.075 25 C -0.173 4.173 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.596 1.744 -11.416 11.563 hybrid contribution -0.395 -2.420 0.028 2.452 sum -0.991 -0.676 -11.387 11.450 Atomic orbital electron populations 1.22644 0.83483 1.01710 0.98828 1.88153 1.17303 1.27600 1.95026 1.23009 0.96397 0.84400 0.98658 1.21517 0.89450 0.99080 0.90872 1.43196 1.55455 1.06179 1.08845 1.19207 1.43558 0.80483 1.02688 0.89802 1.25296 0.93886 1.00044 0.95859 1.69793 1.28701 1.36905 1.14399 0.86171 0.79238 0.82542 0.77711 1.20001 1.20997 1.19448 1.19465 0.81798 0.86303 0.85478 1.90561 1.59000 1.14600 1.83981 1.23651 1.05615 1.00368 0.97041 1.85849 1.80433 1.11095 1.02986 1.22133 1.03777 0.96694 0.98584 1.21303 1.01722 0.92732 0.99419 1.20896 0.99922 0.99479 0.92336 1.19829 1.01241 0.93852 0.95559 1.20731 1.01163 0.99529 0.95160 1.20769 1.01069 0.93275 0.97556 1.19474 1.00303 0.95985 0.91769 1.20793 1.02981 0.90998 1.02542 0.94997 0.90469 0.95163 0.94227 0.94128 0.86699 0.90960 0.91804 0.88257 0.87113 0.85424 0.86129 0.91523 0.91845 0.91765 0.86110 0.90929 0.91578 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.70 10.18 -35.23 -0.36 -8.06 16 3 C 0.05 1.10 6.28 37.15 0.23 1.33 16 4 C 0.11 2.70 5.40 -4.04 -0.02 2.68 16 5 N -0.42 -10.36 2.49 -114.82 -0.29 -10.64 16 6 C -0.33 -8.22 7.98 -14.94 -0.12 -8.34 16 7 H 0.08 2.01 7.29 -52.48 -0.38 1.63 16 8 C 0.06 1.38 4.99 -17.47 -0.09 1.30 16 9 N -0.86 -22.32 11.43 55.50 0.63 -21.68 16 10 Si 0.92 19.59 29.60 -169.99 -5.03 14.56 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 C 0.48 11.63 7.64 -10.99 -0.08 11.55 16 15 O -0.59 -15.43 15.49 5.55 0.09 -15.34 16 16 C -0.12 -2.36 3.54 36.00 0.13 -2.24 16 17 S -0.05 -0.93 19.27 -107.50 -2.07 -3.00 16 18 C -0.10 -1.62 6.11 -39.04 -0.24 -1.85 16 19 C -0.13 -1.99 9.34 -39.36 -0.37 -2.36 16 20 C -0.11 -1.43 9.69 -39.61 -0.38 -1.82 16 21 C -0.10 -1.25 5.88 -104.57 -0.62 -1.86 16 22 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 23 C -0.11 -1.34 9.35 -39.61 -0.37 -1.71 16 24 C -0.07 -0.99 5.90 -104.41 -0.62 -1.61 16 25 C -0.12 -1.44 9.57 36.01 0.34 -1.09 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.12 2.89 5.54 -51.93 -0.29 2.61 16 32 H 0.07 1.70 7.47 -51.93 -0.39 1.31 16 33 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 34 H 0.10 1.90 7.45 -51.92 -0.39 1.52 16 35 H 0.11 2.25 7.61 -51.92 -0.40 1.85 16 36 H 0.13 1.99 5.93 -52.49 -0.31 1.68 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.08 1.04 6.78 -51.93 -0.35 0.69 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -29.34 376.25 -8.79 -38.13 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.70 Total: 5.40 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.73 Total: -5.03 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.35 Total: -32.33 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.27 Total: -23.40 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.07 Total: -3.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.34 -8.79 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.236 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds