Wall clock time and date at job start Tue Mar 31 2020 14:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00145 * 2 1 4 4 C 1.52995 * 109.46976 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47211 * 64.99699 * 4 3 2 6 6 C 1.37092 * 120.00146 * 269.99459 * 5 4 3 7 7 H 1.08007 * 119.99651 * 141.16839 * 6 5 4 8 8 C 1.38949 * 120.00562 * 321.17391 * 6 5 4 9 9 N 1.31409 * 119.99846 * 340.55652 * 8 6 5 10 10 Si 1.86796 * 120.00261 * 160.55611 * 8 6 5 11 11 H 1.48500 * 109.47163 * 59.99900 * 10 8 6 12 12 H 1.48500 * 109.47447 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47328 * 300.00125 * 10 8 6 14 14 C 1.34782 * 119.99694 * 90.00328 * 5 4 3 15 15 O 1.21288 * 119.99966 * 356.40620 * 14 5 4 16 16 C 1.50695 * 119.99845 * 176.40942 * 14 5 4 17 17 S 1.81394 * 109.47152 * 185.64536 * 16 14 5 18 18 C 1.76206 * 103.00353 * 184.64582 * 17 16 14 19 19 C 1.38993 * 120.07264 * 354.62593 * 18 17 16 20 20 C 1.38067 * 119.91471 * 180.02562 * 19 18 17 21 21 C 1.38323 * 120.07905 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.91945 * 179.97438 * 21 20 19 23 23 C 1.38282 * 120.16286 * 0.02562 * 21 20 19 24 24 C 1.38106 * 120.08104 * 359.67400 * 23 21 20 25 25 C 1.50699 * 120.04367 * 180.29705 * 24 23 21 26 26 H 1.08997 * 109.46698 * 59.99786 * 1 2 3 27 27 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46811 * 300.00214 * 1 2 3 29 29 H 1.08995 * 109.46871 * 60.00065 * 3 2 1 30 30 H 1.08995 * 109.46933 * 299.99835 * 3 2 1 31 31 H 1.09001 * 109.47162 * 304.99630 * 4 3 2 32 32 H 1.08995 * 109.47512 * 185.00123 * 4 3 2 33 33 H 0.97000 * 120.00222 * 185.02718 * 9 8 6 34 34 H 1.09003 * 109.47407 * 65.64483 * 16 14 5 35 35 H 1.09004 * 109.47014 * 305.64296 * 16 14 5 36 36 H 1.07996 * 120.04580 * 0.02562 * 19 18 17 37 37 H 1.07996 * 119.95897 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.46915 * 89.99731 * 22 21 20 39 39 H 1.08996 * 109.47347 * 209.99845 * 22 21 20 40 40 H 1.09003 * 109.47174 * 330.00322 * 22 21 20 41 41 H 1.07996 * 119.95993 * 179.97438 * 23 21 20 42 42 H 1.08990 * 109.47092 * 270.32546 * 25 24 23 43 43 H 1.09001 * 109.46660 * 30.32889 * 25 24 23 44 44 H 1.09003 * 109.46505 * 150.32250 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0969 -0.7987 -1.3369 7 1 3.8024 -1.3122 -2.2403 8 6 4.5986 -1.5195 -0.2601 9 7 5.3008 -0.9101 0.6685 10 14 4.2747 -3.3547 -0.1324 11 1 4.8433 -4.0415 -1.3199 12 1 4.9121 -3.8854 1.0993 13 1 2.8105 -3.5962 -0.0749 14 6 4.2616 1.3336 -2.3218 15 8 4.0923 2.5334 -2.2682 16 6 4.7915 0.7030 -3.5837 17 16 5.2329 2.0026 -4.7698 18 6 5.6916 1.0898 -6.2056 19 6 5.7525 -0.2980 -6.1586 20 6 6.1129 -1.0099 -7.2854 21 6 6.4135 -0.3436 -8.4597 22 6 6.8069 -1.1242 -9.6872 23 6 6.3549 1.0371 -8.5097 24 6 5.9893 1.7555 -7.3884 25 6 5.9192 3.2598 -7.4458 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8514 0.5682 0.8410 32 1 3.9786 2.1763 0.0889 33 1 5.7124 -1.4239 1.3808 34 1 4.0260 0.0597 -4.0177 35 1 5.6753 0.1093 -3.3498 36 1 5.5184 -0.8188 -5.2420 37 1 6.1609 -2.0882 -7.2496 38 1 5.9152 -1.3654 -10.2657 39 1 7.4845 -0.5261 -10.2965 40 1 7.3056 -2.0459 -9.3874 41 1 6.5907 1.5539 -9.4282 42 1 6.8896 3.6790 -7.1802 43 1 5.6521 3.5727 -8.4551 44 1 5.1652 3.6153 -6.7435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457182305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:06 Heat of formation + Delta-G solvation = -73.163520 kcal Electronic energy + Delta-G solvation = -24894.149675 eV Core-core repulsion = 21323.209593 eV Total energy + Delta-G solvation = -3570.940082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.57482 -40.25684 -38.57414 -36.65057 -34.41648 -33.57842 -33.25171 -31.88658 -29.71801 -28.19747 -27.62166 -27.30219 -26.50757 -23.79959 -23.09158 -21.80255 -21.08243 -19.18182 -18.22493 -17.93092 -17.24341 -17.05875 -16.68518 -16.34877 -16.24754 -16.02573 -15.88876 -15.55746 -15.18691 -14.99446 -14.60804 -14.07766 -14.03985 -13.92807 -13.78138 -13.61993 -13.29952 -13.25522 -12.89591 -12.86695 -12.82662 -12.65189 -12.55900 -12.51375 -12.30341 -12.12724 -11.91109 -11.83944 -11.09159 -10.97898 -10.59756 -10.46482 -10.35767 -9.70010 -9.48433 -8.30824 -8.28144 -6.05784 0.26407 0.41463 0.47727 1.40500 1.49556 1.53350 1.56434 1.88586 2.31797 2.70740 2.85372 2.99455 3.14123 3.84677 3.94190 4.01520 4.06722 4.11494 4.24633 4.38096 4.39532 4.42957 4.48276 4.51144 4.58730 4.58881 4.63910 4.74796 4.77807 4.78401 4.79297 4.84409 4.90825 5.04597 5.20366 5.31188 5.31758 5.36890 5.47995 5.53844 5.67336 5.93845 6.05860 6.37053 6.39513 7.11012 7.47383 7.91078 8.73481 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.003629 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.335986 B = 7713.815601 C = 8807.521575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.112 3.888 5 N -0.428 5.428 6 C -0.341 4.341 7 H 0.088 0.912 8 C 0.019 3.981 9 N -0.891 5.891 10 Si 0.977 3.023 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.469 3.531 15 O -0.620 6.620 16 C -0.101 4.101 17 S -0.078 6.078 18 C -0.121 4.121 19 C -0.143 4.143 20 C -0.115 4.115 21 C -0.094 4.094 22 C -0.108 4.108 23 C -0.108 4.108 24 C -0.076 4.076 25 C -0.115 4.115 26 H 0.038 0.962 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.273 0.727 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.154 0.846 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -1.208 -14.446 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.013 4.013 4 C -0.012 4.012 5 N -0.145 5.145 6 C -0.469 4.469 7 H 0.106 0.894 8 C -0.185 4.185 9 N -0.528 5.528 10 Si 0.801 3.199 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.257 3.743 15 O -0.508 6.508 16 C -0.252 4.252 17 S 0.166 5.834 18 C -0.234 4.234 19 C -0.167 4.167 20 C -0.135 4.135 21 C -0.097 4.097 22 C -0.164 4.164 23 C -0.127 4.127 24 C -0.082 4.082 25 C -0.172 4.172 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.171 0.829 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.733 0.365 -13.831 13.855 hybrid contribution -0.338 -1.989 0.662 2.123 sum -1.072 -1.623 -13.170 13.312 Atomic orbital electron populations 1.22882 0.80759 1.03254 1.00258 1.88081 1.20328 1.27645 1.95295 1.22786 0.94302 0.84699 0.99462 1.21480 0.91732 0.97904 0.90099 1.43418 1.55420 1.06456 1.09242 1.19432 1.43698 0.80639 1.03137 0.89399 1.26029 0.93331 1.03838 0.95309 1.69897 1.29550 1.38396 1.14968 0.85237 0.78756 0.77888 0.77979 1.18751 1.20846 1.19608 1.20034 0.81513 0.86191 0.86520 1.90523 1.59992 1.15627 1.84670 1.23385 1.05210 1.00593 0.95994 1.85796 1.81632 1.11539 1.04435 1.22084 1.06396 0.96918 0.97957 1.21362 1.02648 0.92648 1.00068 1.21182 0.99667 1.00554 0.92098 1.20307 0.98923 0.94183 0.96256 1.20812 1.02180 0.99699 0.93750 1.21162 1.00001 0.93598 0.97944 1.19813 0.99757 0.97094 0.91544 1.20828 1.02763 0.89884 1.03742 0.94296 0.88935 0.92917 0.91401 0.95121 0.88376 0.92080 0.91722 0.87594 0.87683 0.86508 0.84194 0.90180 0.90129 0.90847 0.82868 0.90334 0.88752 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.61 10.18 -148.98 -1.52 -18.13 16 3 C 0.07 2.71 6.28 71.98 0.45 3.16 16 4 C 0.11 5.44 5.40 86.38 0.47 5.90 16 5 N -0.43 -21.86 2.49 -635.55 -1.58 -23.44 16 6 C -0.34 -17.25 7.98 84.04 0.67 -16.58 16 7 H 0.09 4.27 7.29 -2.91 -0.02 4.25 16 8 C 0.02 0.94 4.99 84.93 0.42 1.36 16 9 N -0.89 -47.07 11.43 21.66 0.25 -46.83 16 10 Si 0.98 40.02 29.60 68.60 2.03 42.05 16 11 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 12 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 13 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 14 C 0.47 23.57 7.64 87.65 0.67 24.24 16 15 O -0.62 -33.52 15.49 -3.05 -0.05 -33.57 16 16 C -0.10 -4.31 3.54 71.23 0.25 -4.06 16 17 S -0.08 -3.05 19.27 -56.49 -1.09 -4.14 16 18 C -0.12 -3.98 6.11 22.62 0.14 -3.84 16 19 C -0.14 -4.47 9.34 22.41 0.21 -4.26 16 20 C -0.12 -2.90 9.69 22.25 0.22 -2.69 16 21 C -0.09 -2.02 5.88 -19.83 -0.12 -2.13 16 22 C -0.11 -1.48 10.01 71.24 0.71 -0.77 16 23 C -0.11 -2.37 9.35 22.25 0.21 -2.17 16 24 C -0.08 -2.09 5.90 -19.72 -0.12 -2.20 16 25 C -0.12 -2.71 9.57 71.24 0.68 -2.03 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 5.12 5.54 -2.39 -0.01 5.11 16 32 H 0.06 3.02 7.47 -2.39 -0.02 3.01 16 33 H 0.27 13.67 8.32 -92.71 -0.77 12.90 16 34 H 0.11 4.24 7.45 -2.39 -0.02 4.23 16 35 H 0.10 4.49 7.61 -2.39 -0.02 4.47 16 36 H 0.12 3.77 5.93 -2.91 -0.02 3.75 16 37 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 40 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 41 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 44 H 0.06 1.59 6.78 -2.39 -0.02 1.57 16 Total: -1.00 -64.79 376.25 5.15 -59.65 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.99 Total: 28.47 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 6.12 Total: -4.06 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -1.34 Total: -70.27 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -1.56 Total: -51.70 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -1.09 Total: -4.14 kcal Total: -64.79 5.15 -59.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.518 kcal (2) G-P(sol) polarization free energy of solvation -64.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds