Wall clock time and date at job start Tue Mar 31 2020 14:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99852 * 2 1 4 4 C 1.53003 * 109.47075 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.46896 * 65.00322 * 4 3 2 6 6 C 1.37102 * 120.00410 * 270.00300 * 5 4 3 7 7 H 1.07997 * 120.00407 * 145.15037 * 6 5 4 8 8 C 1.38952 * 119.99049 * 325.14225 * 6 5 4 9 9 N 1.31406 * 120.00792 * 337.43293 * 8 6 5 10 10 Si 1.86807 * 119.99445 * 157.43110 * 8 6 5 11 11 H 1.48498 * 109.47240 * 90.00035 * 10 8 6 12 12 H 1.48498 * 109.47055 * 209.99929 * 10 8 6 13 13 H 1.48498 * 109.47182 * 330.00302 * 10 8 6 14 14 C 1.34783 * 120.00197 * 89.99634 * 5 4 3 15 15 O 1.21295 * 119.99651 * 4.90501 * 14 5 4 16 16 C 1.50701 * 120.00243 * 184.90039 * 14 5 4 17 17 C 1.52997 * 109.46912 * 177.66580 * 16 14 5 18 18 S 1.81404 * 109.46865 * 180.02562 * 17 16 14 19 19 C 1.76202 * 102.99726 * 179.97438 * 18 17 16 20 20 C 1.38974 * 120.08297 * 359.72542 * 19 18 17 21 21 C 1.38082 * 119.91753 * 179.77036 * 20 19 18 22 22 C 1.38301 * 120.08092 * 0.50498 * 21 20 19 23 23 C 1.50701 * 119.91611 * 179.77078 * 22 21 20 24 24 C 1.38296 * 120.16226 * 359.74103 * 22 21 20 25 25 C 1.38081 * 120.08088 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.47393 * 59.99573 * 1 2 3 27 27 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46916 * 299.99775 * 1 2 3 29 29 H 1.09008 * 109.46808 * 60.00303 * 3 2 1 30 30 H 1.09001 * 109.47570 * 300.00685 * 3 2 1 31 31 H 1.09000 * 109.47151 * 305.00592 * 4 3 2 32 32 H 1.08997 * 109.46974 * 185.00182 * 4 3 2 33 33 H 0.96996 * 120.00687 * 185.02616 * 9 8 6 34 34 H 1.08994 * 109.47002 * 57.66673 * 16 14 5 35 35 H 1.08996 * 109.46845 * 297.66108 * 16 14 5 36 36 H 1.08996 * 109.47875 * 59.99574 * 17 16 14 37 37 H 1.09009 * 109.46896 * 299.99645 * 17 16 14 38 38 H 1.08003 * 120.04016 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.95810 * 180.22948 * 21 20 19 40 40 H 1.09000 * 109.47021 * 269.97047 * 23 22 21 41 41 H 1.08998 * 109.47554 * 29.97486 * 23 22 21 42 42 H 1.09000 * 109.47133 * 149.97876 * 23 22 21 43 43 H 1.08000 * 119.96055 * 179.97438 * 24 22 21 44 44 H 1.08003 * 120.04299 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0979 -0.7989 -1.3347 7 1 3.8652 -1.3060 -2.2594 8 6 4.5204 -1.5280 -0.2298 9 7 5.2121 -0.9399 0.7202 10 14 4.1049 -3.3442 -0.0949 11 1 5.1834 -4.1469 -0.7256 12 1 3.9819 -3.7188 1.3368 13 1 2.8193 -3.6108 -0.7886 14 6 4.2632 1.3331 -2.3200 15 8 4.2421 2.5418 -2.2208 16 6 4.6100 0.6913 -3.6387 17 6 4.8330 1.7783 -4.6920 18 16 5.2496 1.0056 -6.2794 19 6 5.4659 2.3892 -7.3489 20 6 5.2964 3.6796 -6.8616 21 6 5.4713 4.7615 -7.7015 22 6 5.8046 4.5618 -9.0289 23 6 5.9896 5.7451 -9.9435 24 6 5.9691 3.2790 -9.5186 25 6 5.8005 2.1924 -8.6834 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9784 2.1766 0.0902 33 1 5.5693 -1.4629 1.4548 34 1 3.7924 0.0428 -3.9532 35 1 5.5196 0.1012 -3.5274 36 1 5.6505 2.4269 -4.3775 37 1 3.9232 2.3685 -4.8032 38 1 5.0314 3.8361 -5.8263 39 1 5.3434 5.7647 -7.3226 40 1 5.0369 5.9964 -10.4098 41 1 6.3479 6.5978 -9.3668 42 1 6.7177 5.4971 -10.7158 43 1 6.2289 3.1268 -10.5558 44 1 5.9287 1.1908 -9.0666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457182453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:48 Heat of formation + Delta-G solvation = -59.989941 kcal Electronic energy + Delta-G solvation = -24405.434082 eV Core-core repulsion = 20835.065249 eV Total energy + Delta-G solvation = -3570.368833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.18109 -38.75963 -37.00646 -34.78338 -32.95125 -32.35917 -31.58834 -30.97121 -29.20112 -27.17531 -25.88351 -24.95704 -24.13209 -22.57278 -21.64534 -21.29837 -19.06226 -17.57699 -16.95927 -16.32816 -15.65506 -15.49519 -15.38714 -15.28270 -14.91677 -14.60637 -14.37803 -14.22884 -14.05420 -13.92404 -13.52792 -13.31814 -12.95157 -12.48582 -12.41661 -12.28219 -12.01542 -11.70447 -11.60613 -11.31110 -11.15392 -11.12462 -11.05442 -10.96537 -10.69985 -10.62895 -10.35044 -10.07793 -9.94537 -9.46325 -9.17160 -9.02676 -8.98454 -8.49016 -7.51364 -7.22454 -6.33932 -3.97446 1.16346 1.33367 1.68257 2.62716 3.16422 3.27319 3.33833 3.62531 3.82583 4.16784 4.50344 4.71895 4.73792 4.78463 4.92961 5.08006 5.15570 5.33051 5.36642 5.36934 5.40771 5.56800 5.60377 5.65140 5.71185 5.85308 5.88110 5.95929 5.96774 6.01671 6.05397 6.25398 6.26387 6.28630 6.36706 6.37405 6.50594 6.50978 6.72182 6.87028 7.27406 7.51202 7.80099 7.98821 8.37070 9.11105 9.48399 9.90024 10.69104 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.002751 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.418162 B =10175.805066 C =10909.654767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.424 5.424 6 C -0.329 4.329 7 H 0.088 0.912 8 C 0.053 3.947 9 N -0.863 5.863 10 Si 0.916 3.084 11 H -0.280 1.280 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.470 3.530 15 O -0.614 6.614 16 C -0.104 4.104 17 C -0.078 4.078 18 S -0.127 6.127 19 C -0.080 4.080 20 C -0.129 4.129 21 C -0.101 4.101 22 C -0.101 4.101 23 C -0.111 4.111 24 C -0.105 4.105 25 C -0.101 4.101 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.270 0.730 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.124 0.876 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 6.313 -13.144 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.141 5.141 6 C -0.456 4.456 7 H 0.106 0.894 8 C -0.153 4.153 9 N -0.500 5.500 10 Si 0.743 3.257 11 H -0.206 1.206 12 H -0.209 1.209 13 H -0.192 1.192 14 C 0.258 3.742 15 O -0.502 6.502 16 C -0.145 4.145 17 C -0.227 4.227 18 S 0.119 5.881 19 C -0.193 4.193 20 C -0.153 4.153 21 C -0.120 4.120 22 C -0.104 4.104 23 C -0.168 4.168 24 C -0.125 4.125 25 C -0.125 4.125 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.142 0.858 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.657 5.412 -12.967 14.148 hybrid contribution -0.607 0.547 0.503 0.959 sum -2.264 5.959 -12.464 13.999 Atomic orbital electron populations 1.22649 0.83535 1.01744 0.98781 1.88164 1.17248 1.27558 1.94997 1.23016 0.96483 0.84391 0.98420 1.21552 0.89298 0.99308 0.91458 1.43309 1.55390 1.06351 1.09013 1.19283 1.45967 0.80486 0.99909 0.89389 1.25216 0.94206 0.99956 0.95889 1.69805 1.30394 1.36947 1.12850 0.86113 0.79248 0.82672 0.77679 1.20614 1.20877 1.19212 1.20101 0.80915 0.86651 0.86545 1.90514 1.59214 1.14600 1.85870 1.21057 1.04334 0.96970 0.92128 1.23454 1.05457 1.01335 0.92447 1.85434 1.86615 1.10509 1.05514 1.21851 1.03387 0.96683 0.97404 1.21336 1.01793 0.91535 1.00595 1.20943 0.99445 0.98585 0.93056 1.19907 1.00904 0.94977 0.94641 1.20755 1.01932 0.95646 0.98429 1.20907 1.00510 0.91733 0.99328 1.20745 1.00883 0.99241 0.91644 0.95025 0.90436 0.95194 0.94282 0.94459 0.86383 0.90956 0.91998 0.89413 0.88479 0.88953 0.89304 0.85253 0.85888 0.91362 0.91647 0.91689 0.85850 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.66 10.18 -35.23 -0.36 -8.02 16 3 C 0.05 1.12 6.28 37.16 0.23 1.36 16 4 C 0.11 2.55 5.47 -4.04 -0.02 2.52 16 5 N -0.42 -10.49 2.52 -114.81 -0.29 -10.78 16 6 C -0.33 -8.27 8.23 -14.93 -0.12 -8.39 16 7 H 0.09 2.13 6.96 -52.49 -0.37 1.77 16 8 C 0.05 1.34 4.95 -17.47 -0.09 1.26 16 9 N -0.86 -22.71 11.34 55.50 0.63 -22.08 16 10 Si 0.92 20.00 29.61 -169.99 -5.03 14.97 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 C 0.47 11.10 7.62 -10.98 -0.08 11.02 16 15 O -0.61 -15.48 15.54 5.54 0.09 -15.40 16 16 C -0.10 -2.03 4.33 -27.88 -0.12 -2.15 16 17 C -0.08 -1.35 3.63 37.16 0.13 -1.21 16 18 S -0.13 -1.95 21.92 -107.50 -2.36 -4.31 16 19 C -0.08 -1.15 6.11 -39.03 -0.24 -1.39 16 20 C -0.13 -1.79 9.36 -39.37 -0.37 -2.16 16 21 C -0.10 -1.20 9.69 -39.62 -0.38 -1.58 16 22 C -0.10 -1.09 5.88 -104.58 -0.62 -1.70 16 23 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 24 C -0.11 -1.13 9.69 -39.62 -0.38 -1.52 16 25 C -0.10 -1.26 9.79 -39.36 -0.39 -1.65 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.12 3.01 5.37 -51.93 -0.28 2.73 16 32 H 0.07 1.71 7.36 -51.93 -0.38 1.33 16 33 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 34 H 0.09 1.65 7.68 -51.93 -0.40 1.25 16 35 H 0.10 1.92 8.10 -51.93 -0.42 1.50 16 36 H 0.09 1.64 7.69 -51.93 -0.40 1.24 16 37 H 0.09 1.53 7.72 -51.92 -0.40 1.13 16 38 H 0.13 1.85 5.88 -52.48 -0.31 1.54 16 39 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 42 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -29.23 378.76 -9.32 -38.55 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.73 Total: 5.84 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.97 Total: -4.48 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.34 Total: -32.86 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.27 Total: -23.42 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.36 Total: -4.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.23 -9.32 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.437 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds