Wall clock time and date at job start Tue Mar 31 2020 14:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99852 * 2 1 4 4 C 1.53003 * 109.47075 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.46896 * 65.00322 * 4 3 2 6 6 C 1.37102 * 120.00410 * 270.00300 * 5 4 3 7 7 H 1.07997 * 120.00407 * 145.15037 * 6 5 4 8 8 C 1.38952 * 119.99049 * 325.14225 * 6 5 4 9 9 N 1.31406 * 120.00792 * 337.43293 * 8 6 5 10 10 Si 1.86807 * 119.99445 * 157.43110 * 8 6 5 11 11 H 1.48498 * 109.47240 * 90.00035 * 10 8 6 12 12 H 1.48498 * 109.47055 * 209.99929 * 10 8 6 13 13 H 1.48498 * 109.47182 * 330.00302 * 10 8 6 14 14 C 1.34783 * 120.00197 * 89.99634 * 5 4 3 15 15 O 1.21295 * 119.99651 * 4.90501 * 14 5 4 16 16 C 1.50701 * 120.00243 * 184.90039 * 14 5 4 17 17 C 1.52997 * 109.46912 * 177.66580 * 16 14 5 18 18 S 1.81404 * 109.46865 * 180.02562 * 17 16 14 19 19 C 1.76202 * 102.99726 * 179.97438 * 18 17 16 20 20 C 1.38974 * 120.08297 * 359.72542 * 19 18 17 21 21 C 1.38082 * 119.91753 * 179.77036 * 20 19 18 22 22 C 1.38301 * 120.08092 * 0.50498 * 21 20 19 23 23 C 1.50701 * 119.91611 * 179.77078 * 22 21 20 24 24 C 1.38296 * 120.16226 * 359.74103 * 22 21 20 25 25 C 1.38081 * 120.08088 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.47393 * 59.99573 * 1 2 3 27 27 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46916 * 299.99775 * 1 2 3 29 29 H 1.09008 * 109.46808 * 60.00303 * 3 2 1 30 30 H 1.09001 * 109.47570 * 300.00685 * 3 2 1 31 31 H 1.09000 * 109.47151 * 305.00592 * 4 3 2 32 32 H 1.08997 * 109.46974 * 185.00182 * 4 3 2 33 33 H 0.96996 * 120.00687 * 185.02616 * 9 8 6 34 34 H 1.08994 * 109.47002 * 57.66673 * 16 14 5 35 35 H 1.08996 * 109.46845 * 297.66108 * 16 14 5 36 36 H 1.08996 * 109.47875 * 59.99574 * 17 16 14 37 37 H 1.09009 * 109.46896 * 299.99645 * 17 16 14 38 38 H 1.08003 * 120.04016 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.95810 * 180.22948 * 21 20 19 40 40 H 1.09000 * 109.47021 * 269.97047 * 23 22 21 41 41 H 1.08998 * 109.47554 * 29.97486 * 23 22 21 42 42 H 1.09000 * 109.47133 * 149.97876 * 23 22 21 43 43 H 1.08000 * 119.96055 * 179.97438 * 24 22 21 44 44 H 1.08003 * 120.04299 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0979 -0.7989 -1.3347 7 1 3.8652 -1.3060 -2.2594 8 6 4.5204 -1.5280 -0.2298 9 7 5.2121 -0.9399 0.7202 10 14 4.1049 -3.3442 -0.0949 11 1 5.1834 -4.1469 -0.7256 12 1 3.9819 -3.7188 1.3368 13 1 2.8193 -3.6108 -0.7886 14 6 4.2632 1.3331 -2.3200 15 8 4.2421 2.5418 -2.2208 16 6 4.6100 0.6913 -3.6387 17 6 4.8330 1.7783 -4.6920 18 16 5.2496 1.0056 -6.2794 19 6 5.4659 2.3892 -7.3489 20 6 5.2964 3.6796 -6.8616 21 6 5.4713 4.7615 -7.7015 22 6 5.8046 4.5618 -9.0289 23 6 5.9896 5.7451 -9.9435 24 6 5.9691 3.2790 -9.5186 25 6 5.8005 2.1924 -8.6834 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9784 2.1766 0.0902 33 1 5.5693 -1.4629 1.4548 34 1 3.7924 0.0428 -3.9532 35 1 5.5196 0.1012 -3.5274 36 1 5.6505 2.4269 -4.3775 37 1 3.9232 2.3685 -4.8032 38 1 5.0314 3.8361 -5.8263 39 1 5.3434 5.7647 -7.3226 40 1 5.0369 5.9964 -10.4098 41 1 6.3479 6.5978 -9.3668 42 1 6.7177 5.4971 -10.7158 43 1 6.2289 3.1268 -10.5558 44 1 5.9287 1.1908 -9.0666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457182453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:47 Heat of formation + Delta-G solvation = -74.331146 kcal Electronic energy + Delta-G solvation = -24406.055963 eV Core-core repulsion = 20835.065249 eV Total energy + Delta-G solvation = -3570.990714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61233 -40.09129 -38.59927 -36.65163 -34.05542 -33.67178 -33.51740 -31.95197 -30.87543 -27.96864 -27.30800 -26.77918 -25.67255 -23.70349 -22.96445 -22.44880 -20.94144 -18.87680 -18.52321 -18.03305 -17.21262 -17.03474 -16.63826 -16.50431 -16.28198 -16.13157 -16.03560 -15.63166 -15.44469 -14.84638 -14.70548 -14.44717 -14.42250 -13.81020 -13.56926 -13.38553 -13.28370 -13.21099 -13.04033 -12.87524 -12.82193 -12.50595 -12.47228 -12.31553 -12.23885 -12.08763 -11.97493 -11.79301 -11.20386 -11.04187 -10.53909 -10.43732 -10.36849 -9.96634 -9.44689 -8.36907 -8.25967 -5.94744 0.21142 0.39516 0.45615 1.39557 1.42331 1.50911 1.61912 1.97132 2.36131 2.69769 2.93268 3.01622 3.21392 3.82241 3.85869 3.89019 3.99339 4.04416 4.19681 4.24492 4.41006 4.43012 4.45191 4.51766 4.54882 4.60077 4.64076 4.73202 4.77290 4.79310 4.81447 4.88283 4.89535 4.93612 5.08772 5.20954 5.32362 5.36464 5.36861 5.56519 5.64051 5.99214 5.99980 6.41737 6.43533 7.17318 7.58504 7.99760 8.77746 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.002751 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.418162 B =10175.805066 C =10909.654767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.066 3.934 4 C 0.104 3.896 5 N -0.435 5.435 6 C -0.339 4.339 7 H 0.094 0.906 8 C 0.014 3.986 9 N -0.894 5.894 10 Si 0.977 3.023 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.459 3.541 15 O -0.636 6.636 16 C -0.092 4.092 17 C -0.068 4.068 18 S -0.125 6.125 19 C -0.104 4.104 20 C -0.147 4.147 21 C -0.110 4.110 22 C -0.097 4.097 23 C -0.110 4.110 24 C -0.103 4.103 25 C -0.107 4.107 26 H 0.040 0.960 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.271 0.729 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.156 0.844 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 6.216 -15.306 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C -0.011 4.011 4 C -0.020 4.020 5 N -0.152 5.152 6 C -0.466 4.466 7 H 0.112 0.888 8 C -0.189 4.189 9 N -0.531 5.531 10 Si 0.801 3.199 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.247 3.753 15 O -0.526 6.526 16 C -0.133 4.133 17 C -0.216 4.216 18 S 0.120 5.880 19 C -0.217 4.217 20 C -0.171 4.171 21 C -0.130 4.130 22 C -0.100 4.100 23 C -0.166 4.166 24 C -0.123 4.123 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.173 0.827 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.206 5.324 -15.141 16.201 hybrid contribution -0.434 0.690 1.089 1.360 sum -2.640 6.015 -14.052 15.511 Atomic orbital electron populations 1.22887 0.80791 1.03276 1.00253 1.88091 1.20289 1.27628 1.95278 1.22792 0.94266 0.84706 0.99358 1.21508 0.91712 0.98045 0.90709 1.43540 1.55580 1.06575 1.09507 1.19527 1.45952 0.80763 1.00365 0.88844 1.25954 0.93811 1.03642 0.95464 1.69907 1.31382 1.38396 1.13461 0.85187 0.79122 0.78193 0.77386 1.19764 1.21039 1.18877 1.20765 0.80293 0.86549 0.87672 1.90483 1.60057 1.15592 1.86464 1.20937 1.04276 0.97369 0.90765 1.23179 1.04769 1.00353 0.93329 1.85245 1.87229 1.11202 1.04326 1.21913 1.05671 0.96087 0.98040 1.21353 1.02958 0.92294 1.00446 1.21211 0.99350 0.98749 0.93663 1.20349 0.98835 0.96302 0.94481 1.20830 1.03107 0.94421 0.98277 1.21304 0.99275 0.91138 1.00573 1.20999 1.00476 1.00598 0.90973 0.94164 0.88948 0.93024 0.91584 0.95059 0.88258 0.92149 0.91923 0.88571 0.88742 0.90155 0.89850 0.86721 0.84298 0.90146 0.90903 0.90042 0.82668 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.39 -16.45 10.18 -148.98 -1.52 -17.96 16 3 C 0.07 2.73 6.28 71.98 0.45 3.19 16 4 C 0.10 5.07 5.47 86.38 0.47 5.54 16 5 N -0.44 -22.06 2.52 -635.54 -1.60 -23.66 16 6 C -0.34 -17.20 8.23 84.04 0.69 -16.51 16 7 H 0.09 4.54 6.96 -2.91 -0.02 4.52 16 8 C 0.01 0.72 4.95 84.93 0.42 1.14 16 9 N -0.89 -47.87 11.34 21.66 0.25 -47.63 16 10 Si 0.98 40.85 29.61 68.60 2.03 42.88 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 14 C 0.46 22.31 7.62 87.66 0.67 22.97 16 15 O -0.64 -33.24 15.54 -3.08 -0.05 -33.29 16 16 C -0.09 -3.71 4.33 29.85 0.13 -3.58 16 17 C -0.07 -2.40 3.63 71.98 0.26 -2.14 16 18 S -0.12 -3.87 21.92 -56.49 -1.24 -5.11 16 19 C -0.10 -2.97 6.11 22.62 0.14 -2.83 16 20 C -0.15 -4.12 9.36 22.41 0.21 -3.91 16 21 C -0.11 -2.50 9.69 22.25 0.22 -2.29 16 22 C -0.10 -1.84 5.88 -19.84 -0.12 -1.95 16 23 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 24 C -0.10 -1.94 9.69 22.25 0.22 -1.73 16 25 C -0.11 -2.50 9.79 22.41 0.22 -2.28 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 5.23 5.37 -2.39 -0.01 5.22 16 32 H 0.06 2.99 7.36 -2.39 -0.02 2.97 16 33 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 34 H 0.10 3.66 7.68 -2.39 -0.02 3.64 16 35 H 0.09 3.82 8.10 -2.39 -0.02 3.80 16 36 H 0.08 3.00 7.69 -2.39 -0.02 2.99 16 37 H 0.08 3.01 7.72 -2.39 -0.02 2.99 16 38 H 0.11 3.46 5.88 -2.91 -0.02 3.44 16 39 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 42 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 43 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -63.65 378.76 4.79 -58.86 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.98 Total: 28.89 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.94 Total: -2.98 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.36 Total: -71.29 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -1.56 Total: -51.25 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -1.24 Total: -5.11 kcal Total: -63.65 4.79 -58.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.472 kcal (2) G-P(sol) polarization free energy of solvation -63.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds