Wall clock time and date at job start Tue Mar 31 2020 14:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99842 * 2 1 4 4 C 1.52998 * 109.46719 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47335 * 65.00410 * 4 3 2 6 6 C 1.37099 * 120.00060 * 270.00176 * 5 4 3 7 7 H 1.08001 * 119.99859 * 11.06197 * 6 5 4 8 8 C 1.38944 * 120.00233 * 191.07295 * 6 5 4 9 9 N 1.31415 * 119.99901 * 13.30775 * 8 6 5 10 10 Si 1.86797 * 120.00307 * 193.31519 * 8 6 5 11 11 H 1.48499 * 109.47374 * 89.99191 * 10 8 6 12 12 H 1.48497 * 109.47257 * 209.99716 * 10 8 6 13 13 H 1.48510 * 109.46864 * 329.99574 * 10 8 6 14 14 C 1.34774 * 120.00050 * 89.98822 * 5 4 3 15 15 O 1.21289 * 120.00583 * 241.52647 * 14 5 4 16 16 C 1.50707 * 119.99651 * 61.53680 * 14 5 4 17 17 H 1.09007 * 109.47026 * 318.41183 * 16 14 5 18 18 C 1.52998 * 109.47434 * 78.41203 * 16 14 5 19 19 S 1.81402 * 109.46928 * 198.41447 * 16 14 5 20 20 C 1.76200 * 102.99998 * 67.12121 * 19 16 14 21 21 C 1.38977 * 120.07536 * 187.33459 * 20 19 16 22 22 C 1.38081 * 119.91641 * 179.97438 * 21 20 19 23 23 C 1.38304 * 120.07907 * 0.25695 * 22 21 20 24 24 C 1.50707 * 119.91612 * 179.74450 * 23 22 21 25 25 C 1.38301 * 120.16047 * 359.48225 * 23 22 21 26 26 C 1.38075 * 120.08147 * 0.51909 * 25 23 22 27 27 H 1.09001 * 109.46948 * 299.99627 * 1 2 3 28 28 H 1.08998 * 109.46970 * 60.00151 * 1 2 3 29 29 H 1.09004 * 109.47036 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47027 * 60.00223 * 3 2 1 31 31 H 1.09000 * 109.47213 * 299.99952 * 3 2 1 32 32 H 1.09000 * 109.47757 * 304.99894 * 4 3 2 33 33 H 1.09007 * 109.47217 * 184.99786 * 4 3 2 34 34 H 0.97002 * 120.00052 * 185.02574 * 9 8 6 35 35 H 1.08998 * 109.47230 * 300.13460 * 18 16 14 36 36 H 1.09001 * 109.47333 * 60.13002 * 18 16 14 37 37 H 1.08998 * 109.47343 * 180.13696 * 18 16 14 38 38 H 1.07999 * 120.04462 * 359.94861 * 21 20 19 39 39 H 1.07997 * 119.96081 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47004 * 90.00241 * 24 23 22 41 41 H 1.09007 * 109.46678 * 209.99595 * 24 23 22 42 42 H 1.08995 * 109.47290 * 329.99680 * 24 23 22 43 43 H 1.08005 * 119.95751 * 180.25952 * 25 23 22 44 44 H 1.08006 * 120.04506 * 179.72664 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0979 -0.7991 -1.3347 7 1 3.7026 -1.4257 -0.5489 8 6 4.7295 -1.3744 -2.4304 9 7 5.4353 -0.6270 -3.2492 10 14 4.5752 -3.2100 -2.7400 11 1 3.3922 -3.4695 -3.5994 12 1 5.7995 -3.7017 -3.4215 13 1 4.4112 -3.9183 -1.4450 14 6 4.2632 1.3329 -2.3200 15 8 3.6269 1.2080 -3.3450 16 6 5.3744 2.3480 -2.2420 17 1 5.3367 2.8546 -1.2775 18 6 6.7227 1.6410 -2.3943 19 16 5.1761 3.5651 -3.5724 20 6 3.6980 4.4103 -3.1193 21 6 3.1283 5.3323 -3.9893 22 6 1.9696 5.9924 -3.6311 23 6 1.3789 5.7408 -2.4061 24 6 0.1175 6.4676 -2.0165 25 6 1.9401 4.8201 -1.5401 26 6 3.0987 4.1562 -1.8914 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 5.8155 -1.0141 -4.0532 35 1 6.8408 0.9080 -1.5963 36 1 6.7613 1.1363 -3.3597 37 1 7.5265 2.3748 -2.3354 38 1 3.5914 5.5325 -4.9441 39 1 1.5265 6.7093 -4.3064 40 1 -0.7488 5.8947 -2.3472 41 1 0.0846 6.5831 -0.9330 42 1 0.1043 7.4506 -2.4872 43 1 1.4738 4.6231 -0.5860 44 1 3.5389 3.4405 -1.2128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457183245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:03 Heat of formation + Delta-G solvation = -26.916898 kcal Electronic energy + Delta-G solvation = -26593.226222 eV Core-core repulsion = 23024.291544 eV Total energy + Delta-G solvation = -3568.934678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.05695 -38.56312 -37.13058 -34.27832 -32.68695 -32.08148 -31.84104 -30.67882 -28.77181 -26.92185 -25.92452 -24.83152 -23.59385 -22.46530 -21.88429 -21.31493 -19.17189 -17.37870 -16.90019 -16.06761 -15.71448 -15.55846 -15.17973 -14.99569 -14.72051 -14.56173 -14.18160 -13.83100 -13.71869 -13.67485 -13.36236 -13.22795 -12.42553 -12.24745 -12.20024 -11.94586 -11.74967 -11.65811 -11.36698 -11.27952 -11.01241 -10.96088 -10.86845 -10.72792 -10.61274 -10.41782 -10.31019 -10.00624 -9.65169 -9.15867 -9.12977 -8.98962 -8.73256 -8.31009 -7.31929 -6.75114 -6.03599 -3.47288 1.46211 1.61641 2.11167 2.95791 3.35623 3.44065 3.44960 3.86266 3.92258 4.29629 4.38094 4.89303 4.95326 5.00858 5.15661 5.33240 5.37492 5.48166 5.49463 5.60552 5.62816 5.66836 5.68465 5.77487 5.79695 5.81909 5.90924 5.93451 5.94566 6.03801 6.10404 6.21760 6.25263 6.47446 6.52734 6.57660 6.61566 6.76119 6.76989 7.15259 7.36453 7.70154 7.72137 8.16485 9.10618 9.34934 9.63167 10.05868 11.07167 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.005693 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.511045 B = 4916.836728 C = 6408.455454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.541 5.541 6 C -0.267 4.267 7 H 0.089 0.911 8 C 0.015 3.985 9 N -0.885 5.885 10 Si 0.918 3.082 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.578 3.422 15 O -0.487 6.487 16 C -0.091 4.091 17 H 0.080 0.920 18 C -0.097 4.097 19 S -0.089 6.089 20 C -0.068 4.068 21 C -0.104 4.104 22 C -0.104 4.104 23 C -0.108 4.108 24 C -0.108 4.108 25 C -0.099 4.099 26 C -0.131 4.131 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.266 0.734 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.119 0.881 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 11.840 5.463 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C -0.035 4.035 4 C 0.006 3.994 5 N -0.270 5.270 6 C -0.394 4.394 7 H 0.107 0.893 8 C -0.185 4.185 9 N -0.528 5.528 10 Si 0.747 3.253 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.203 1.203 14 C 0.363 3.637 15 O -0.358 6.358 16 C -0.225 4.225 17 H 0.098 0.902 18 C -0.156 4.156 19 S 0.158 5.842 20 C -0.181 4.181 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.165 4.165 25 C -0.119 4.119 26 C -0.155 4.155 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.223 11.616 3.783 12.926 hybrid contribution -1.131 -0.998 0.912 1.762 sum -5.353 10.618 4.695 12.785 Atomic orbital electron populations 1.22650 0.82868 1.02021 0.98897 1.88074 1.17923 1.27132 1.95032 1.23261 0.96399 0.85148 0.98685 1.21101 0.91051 0.97223 0.90030 1.42572 1.71090 1.05454 1.07916 1.19340 1.32132 0.79991 1.07901 0.89304 1.24887 0.96368 0.99158 0.98077 1.69351 1.33743 1.36249 1.13505 0.86051 0.77190 0.83945 0.78118 1.21216 1.21637 1.20276 1.18801 0.81940 0.79419 0.83491 1.90469 1.48360 1.63979 1.32954 1.24150 1.03580 0.97114 0.97650 0.90202 1.21403 0.89382 0.98202 1.06586 1.85073 1.24179 1.36303 1.38673 1.21885 0.99943 0.99463 0.96829 1.20703 0.96199 0.97109 0.98811 1.20854 0.95476 0.99981 0.96045 1.19799 0.97673 0.98622 0.94985 1.20719 0.94848 0.99406 1.01487 1.20829 0.95455 0.96304 0.99314 1.21253 0.97276 1.00870 0.96071 0.95170 0.94685 0.90236 0.94326 0.93721 0.90802 0.92202 0.92230 0.90347 0.88822 0.94629 0.85826 0.86106 0.91558 0.91875 0.91875 0.86349 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.21 10.18 -35.23 -0.36 -7.57 16 3 C 0.04 0.79 6.27 37.16 0.23 1.02 16 4 C 0.13 2.51 5.50 -4.04 -0.02 2.49 16 5 N -0.54 -13.02 2.55 -114.81 -0.29 -13.31 16 6 C -0.27 -7.09 9.21 -14.93 -0.14 -7.22 16 7 H 0.09 2.35 7.87 -52.49 -0.41 1.94 16 8 C 0.02 0.42 5.14 -17.47 -0.09 0.33 16 9 N -0.88 -24.48 7.63 55.50 0.42 -24.06 16 10 Si 0.92 22.04 29.58 -169.99 -5.03 17.01 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.58 14.21 2.26 -10.98 -0.02 14.19 16 15 O -0.49 -14.04 15.62 5.55 0.09 -13.95 16 16 C -0.09 -1.92 2.40 -27.88 -0.07 -1.99 16 17 H 0.08 1.50 5.93 -51.92 -0.31 1.19 16 18 C -0.10 -2.01 8.03 37.16 0.30 -1.71 16 19 S -0.09 -1.78 20.56 -107.50 -2.21 -3.99 16 20 C -0.07 -1.25 6.01 -39.04 -0.23 -1.49 16 21 C -0.10 -1.68 9.79 -39.37 -0.39 -2.07 16 22 C -0.10 -1.45 9.69 -39.61 -0.38 -1.83 16 23 C -0.11 -1.46 5.88 -104.57 -0.62 -2.08 16 24 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 25 C -0.10 -1.48 9.69 -39.62 -0.38 -1.86 16 26 C -0.13 -2.29 8.73 -39.37 -0.34 -2.63 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 33 H 0.06 0.99 5.36 -51.93 -0.28 0.71 16 34 H 0.27 7.32 8.32 -40.82 -0.34 6.98 16 35 H 0.08 1.72 8.11 -51.93 -0.42 1.29 16 36 H 0.09 2.19 6.58 -51.93 -0.34 1.85 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 43 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.12 2.15 3.03 -52.48 -0.16 1.99 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -32.28 367.56 -9.06 -41.34 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.54 Total: 2.96 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.68 Total: -3.96 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.13 Total: -37.37 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.27 Total: -21.52 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.28 -9.06 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.425 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds