Wall clock time and date at job start Tue Mar 31 2020 14:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00327 * 2 1 4 4 C 1.53004 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47040 * 65.00186 * 4 3 2 6 6 C 1.37093 * 120.00289 * 85.18375 * 5 4 3 7 7 H 1.08001 * 120.00028 * 217.99753 * 6 5 4 8 8 C 1.38951 * 120.00238 * 37.71180 * 6 5 4 9 9 N 1.31411 * 119.99853 * 20.54039 * 8 6 5 10 10 Si 1.86802 * 120.00354 * 200.54003 * 8 6 5 11 11 H 1.48504 * 109.46673 * 59.99915 * 10 8 6 12 12 H 1.48497 * 109.47226 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47012 * 300.00360 * 10 8 6 14 14 C 1.34780 * 119.99630 * 265.17887 * 5 4 3 15 15 O 1.21292 * 120.00135 * 0.02562 * 14 5 4 16 16 C 1.50696 * 119.99666 * 180.02562 * 14 5 4 17 17 H 1.08997 * 109.47533 * 40.00272 * 16 14 5 18 18 C 1.53003 * 109.47104 * 279.99397 * 16 14 5 19 19 S 1.81402 * 109.47134 * 159.99943 * 16 14 5 20 20 C 1.76196 * 103.00293 * 189.06222 * 19 16 14 21 21 C 1.38976 * 120.08149 * 264.97681 * 20 19 16 22 22 C 1.38085 * 119.91833 * 179.71782 * 21 20 19 23 23 C 1.38302 * 120.07866 * 0.57945 * 22 21 20 24 24 C 1.50699 * 119.91791 * 179.69833 * 23 22 21 25 25 C 1.38301 * 120.15984 * 359.67062 * 23 22 21 26 26 C 1.38079 * 120.08428 * 0.04885 * 25 23 22 27 27 H 1.09002 * 109.47297 * 59.99360 * 1 2 3 28 28 H 1.08997 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46742 * 299.99996 * 1 2 3 30 30 H 1.08993 * 109.47292 * 60.00048 * 3 2 1 31 31 H 1.08999 * 109.47060 * 300.00310 * 3 2 1 32 32 H 1.08990 * 109.47051 * 305.00006 * 4 3 2 33 33 H 1.09002 * 109.46911 * 184.99585 * 4 3 2 34 34 H 0.96997 * 120.00136 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47074 * 174.04679 * 18 16 14 36 36 H 1.08993 * 109.47206 * 294.05626 * 18 16 14 37 37 H 1.09001 * 109.46632 * 54.05105 * 18 16 14 38 38 H 1.08004 * 120.03663 * 0.02562 * 21 20 19 39 39 H 1.07996 * 119.95921 * 180.27479 * 22 21 20 40 40 H 1.08994 * 109.47046 * 269.97728 * 24 23 22 41 41 H 1.09004 * 109.47005 * 29.97771 * 24 23 22 42 42 H 1.09006 * 109.47120 * 149.97208 * 24 23 22 43 43 H 1.08003 * 119.95532 * 180.02562 * 25 23 22 44 44 H 1.07995 * 120.04254 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1713 1.3365 -2.3686 7 1 3.8942 0.9591 -3.3418 8 6 4.7207 2.6069 -2.2467 9 7 5.4140 2.9230 -1.1761 10 14 4.4738 3.8656 -3.6047 11 1 3.0219 4.1185 -3.7871 12 1 5.1539 5.1328 -3.2348 13 1 5.0486 3.3461 -4.8716 14 6 4.1883 -0.7655 -1.3077 15 8 4.0149 -1.4487 -0.3207 16 6 4.6417 -1.4034 -2.5956 17 1 5.3742 -0.7593 -3.0820 18 6 3.4382 -1.5963 -3.5204 19 16 5.3951 -3.0147 -2.2398 20 6 6.0933 -3.4769 -3.7901 21 6 5.3804 -4.2941 -4.6592 22 6 5.9283 -4.6495 -5.8758 23 6 7.1899 -4.2030 -6.2247 24 6 7.7872 -4.5986 -7.5505 25 6 7.9044 -3.3938 -5.3601 26 6 7.3605 -3.0296 -4.1444 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5681 0.8409 33 1 3.9786 2.1764 0.0888 34 1 5.7973 3.8100 -1.0908 35 1 3.7795 -1.9589 -4.4900 36 1 2.7548 -2.3227 -3.0807 37 1 2.9228 -0.6445 -3.6494 38 1 4.3969 -4.6467 -4.3854 39 1 5.3731 -5.2809 -6.5536 40 1 8.3468 -5.5267 -7.4344 41 1 6.9899 -4.7439 -8.2794 42 1 8.4569 -3.8113 -7.8968 43 1 8.8892 -3.0467 -5.6362 44 1 7.9192 -2.3981 -3.4696 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457183249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:05 Heat of formation + Delta-G solvation = -68.796855 kcal Electronic energy + Delta-G solvation = -25357.997734 eV Core-core repulsion = 21787.247005 eV Total energy + Delta-G solvation = -3570.750729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57680 -40.08764 -38.56254 -36.64590 -34.22460 -33.56303 -33.47212 -31.95255 -30.64615 -27.81794 -27.22264 -26.88790 -25.41623 -23.64914 -23.33131 -22.46742 -21.01205 -19.30221 -18.31971 -17.89245 -17.28995 -16.94012 -16.50326 -16.34827 -16.20583 -16.16108 -15.76893 -15.48968 -15.30775 -14.77424 -14.58099 -14.46467 -14.37331 -13.82207 -13.50897 -13.41820 -13.10287 -13.09101 -13.05381 -13.00861 -12.81550 -12.65142 -12.58491 -12.27988 -12.11764 -11.98482 -11.97754 -11.87649 -11.06664 -11.02876 -10.55749 -10.28031 -9.92000 -9.51850 -9.45183 -8.69653 -8.30092 -6.08323 -0.07881 0.43214 0.83301 1.42224 1.47841 1.56052 1.72392 2.08382 2.30560 2.75573 2.91397 2.98110 3.16022 3.88746 3.99549 4.05887 4.07753 4.10508 4.27018 4.33120 4.37950 4.42637 4.49305 4.52952 4.56756 4.64431 4.74410 4.75152 4.79561 4.80023 4.81106 4.87798 5.01784 5.07713 5.10625 5.20457 5.27188 5.36070 5.44762 5.51131 5.61195 5.98908 6.01413 6.36119 6.45878 7.12503 7.56252 8.04978 8.71814 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.004170 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.768706 B = 6713.369349 C = 8032.602238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.062 3.938 4 C 0.112 3.888 5 N -0.439 5.439 6 C -0.355 4.355 7 H 0.096 0.904 8 C 0.008 3.992 9 N -0.890 5.890 10 Si 0.978 3.022 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.487 3.513 15 O -0.609 6.609 16 C -0.063 4.063 17 H 0.093 0.907 18 C -0.119 4.119 19 S -0.147 6.147 20 C -0.141 4.141 21 C -0.074 4.074 22 C -0.130 4.130 23 C -0.065 4.065 24 C -0.114 4.114 25 C -0.133 4.133 26 C -0.087 4.087 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.110 0.890 34 H 0.274 0.726 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -7.645 -12.163 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.015 4.015 4 C -0.011 4.011 5 N -0.157 5.157 6 C -0.482 4.482 7 H 0.114 0.886 8 C -0.195 4.195 9 N -0.527 5.527 10 Si 0.801 3.199 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.274 3.726 15 O -0.495 6.495 16 C -0.193 4.193 17 H 0.111 0.889 18 C -0.178 4.178 19 S 0.086 5.914 20 C -0.252 4.252 21 C -0.095 4.095 22 C -0.149 4.149 23 C -0.065 4.065 24 C -0.170 4.170 25 C -0.153 4.153 26 C -0.108 4.108 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.172 0.828 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.164 0.836 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.720 -8.486 -10.541 13.552 hybrid contribution -0.115 1.876 -0.996 2.127 sum -0.836 -6.610 -11.537 13.323 Atomic orbital electron populations 1.22854 0.80555 1.03062 1.00454 1.88076 1.20674 1.28388 1.95388 1.22876 0.94119 0.84528 1.00025 1.21495 0.92110 1.00694 0.86851 1.43352 1.57333 1.04455 1.10572 1.19715 1.42213 0.98566 0.87726 0.88616 1.26169 0.93135 1.00515 0.99718 1.69973 1.29931 1.22025 1.30767 0.85230 0.78953 0.77245 0.78472 1.18984 1.20743 1.19054 1.20009 0.80258 0.83753 0.88543 1.90527 1.57497 1.63350 1.38122 1.23112 1.01846 0.95742 0.98645 0.88904 1.21800 0.95518 1.02530 0.97944 1.85927 1.70164 1.23313 1.11971 1.21945 0.98513 1.05404 0.99345 1.21716 0.99524 0.95183 0.93034 1.21402 0.95897 1.01255 0.96354 1.20497 0.94052 0.94740 0.97242 1.20902 1.01663 1.02666 0.91772 1.21340 1.01181 0.99409 0.93338 1.21712 0.94142 0.97811 0.97096 0.93794 0.89357 0.92953 0.91668 0.93424 0.94073 0.87276 0.91632 0.90592 0.92013 0.91466 0.84756 0.82762 0.89616 0.89983 0.90506 0.83609 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.08 16 2 O -0.41 -17.57 10.11 -148.98 -1.51 -19.08 16 3 C 0.06 2.58 6.26 71.98 0.45 3.03 16 4 C 0.11 5.57 5.50 86.38 0.47 6.05 16 5 N -0.44 -22.67 2.49 -635.53 -1.58 -24.25 16 6 C -0.35 -17.66 8.01 84.04 0.67 -16.99 16 7 H 0.10 4.54 5.74 -2.91 -0.02 4.52 16 8 C 0.01 0.40 5.02 84.93 0.43 0.82 16 9 N -0.89 -46.15 11.36 21.66 0.25 -45.90 16 10 Si 0.98 38.07 29.60 68.60 2.03 40.10 16 11 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 12 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 14 C 0.49 25.40 6.55 87.66 0.57 25.97 16 15 O -0.61 -35.21 15.28 -3.07 -0.05 -35.26 16 16 C -0.06 -2.76 2.33 29.85 0.07 -2.69 16 17 H 0.09 4.27 7.35 -2.39 -0.02 4.25 16 18 C -0.12 -4.43 8.82 71.98 0.64 -3.79 16 19 S -0.15 -6.08 20.32 -56.49 -1.15 -7.23 16 20 C -0.14 -4.62 5.42 22.62 0.12 -4.50 16 21 C -0.07 -2.00 9.51 22.41 0.21 -1.78 16 22 C -0.13 -2.71 9.69 22.25 0.22 -2.49 16 23 C -0.07 -1.30 5.88 -19.83 -0.12 -1.41 16 24 C -0.11 -1.39 10.01 71.24 0.71 -0.67 16 25 C -0.13 -3.11 9.69 22.25 0.22 -2.89 16 26 C -0.09 -2.63 9.79 22.41 0.22 -2.41 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 2.19 7.28 -2.39 -0.02 2.17 16 33 H 0.11 5.58 5.47 -2.39 -0.01 5.56 16 34 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 35 H 0.08 2.43 7.69 -2.39 -0.02 2.41 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.57 6.43 -2.39 -0.02 2.56 16 38 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 42 H 0.08 0.83 8.08 -2.38 -0.02 0.81 16 43 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -67.19 377.64 5.11 -62.07 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.98 Total: 31.23 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 6.13 Total: -1.68 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -1.33 Total: -70.15 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -1.55 Total: -54.34 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 16 Polarization: -6.08 SS G_CDS: -1.15 Total: -7.23 kcal Total: -67.19 5.11 -62.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.724 kcal (2) G-P(sol) polarization free energy of solvation -67.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds