Wall clock time and date at job start Tue Mar 31 2020 14:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00125 * 2 1 4 4 C 1.53001 * 109.47178 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46863 * 66.06213 * 4 3 2 6 6 C 1.37104 * 119.99522 * 266.64890 * 5 4 3 7 7 H 1.07999 * 119.99478 * 142.11181 * 6 5 4 8 8 C 1.38950 * 120.00212 * 322.11124 * 6 5 4 9 9 N 1.31401 * 120.00235 * 157.75394 * 8 6 5 10 10 Si 1.86798 * 119.99787 * 337.75341 * 8 6 5 11 11 H 1.48501 * 109.47269 * 95.34357 * 10 8 6 12 12 H 1.48507 * 109.47277 * 215.34309 * 10 8 6 13 13 H 1.48502 * 109.47330 * 335.34205 * 10 8 6 14 14 C 1.34771 * 120.00159 * 86.64739 * 5 4 3 15 15 O 1.21286 * 120.00179 * 0.02562 * 14 5 4 16 16 C 1.50703 * 119.99870 * 179.97438 * 14 5 4 17 17 S 1.81401 * 109.47317 * 180.02562 * 16 14 5 18 18 C 1.81397 * 103.00246 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.47146 * 180.02562 * 18 17 16 20 20 C 1.38239 * 120.00419 * 89.99697 * 19 18 17 21 21 C 1.38233 * 120.00016 * 179.72758 * 20 19 18 22 22 C 1.38231 * 120.00038 * 0.25440 * 21 20 19 23 23 C 1.50703 * 119.99822 * 180.02562 * 22 21 20 24 24 C 1.38233 * 120.00352 * 0.02562 * 22 21 20 25 25 C 1.38239 * 119.99887 * 359.96168 * 24 22 21 26 26 H 1.08999 * 109.46800 * 59.99721 * 1 2 3 27 27 H 1.08995 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46980 * 299.99905 * 1 2 3 29 29 H 1.09004 * 109.46874 * 59.99850 * 3 2 1 30 30 H 1.09001 * 109.47341 * 300.00338 * 3 2 1 31 31 H 1.08996 * 109.46956 * 306.06097 * 4 3 2 32 32 H 1.09006 * 109.46972 * 186.05706 * 4 3 2 33 33 H 0.97004 * 120.00391 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47631 * 60.00126 * 16 14 5 35 35 H 1.08998 * 109.47053 * 299.99981 * 16 14 5 36 36 H 1.08997 * 109.47322 * 59.99437 * 18 17 16 37 37 H 1.09004 * 109.46843 * 300.00129 * 18 17 16 38 38 H 1.07998 * 119.99311 * 0.02562 * 20 19 18 39 39 H 1.08004 * 119.99526 * 180.28304 * 21 20 19 40 40 H 1.08998 * 109.46927 * 90.00224 * 23 22 21 41 41 H 1.09004 * 109.47055 * 209.99379 * 23 22 21 42 42 H 1.08998 * 109.47059 * 329.99953 * 23 22 21 43 43 H 1.08001 * 120.00136 * 179.97438 * 24 22 21 44 44 H 1.08003 * 119.99836 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9785 0.5871 -1.2615 6 6 4.1660 -0.7682 -1.3497 7 1 3.8919 -1.2935 -2.2526 8 6 4.7087 -1.4658 -0.2775 9 7 4.4986 -2.7576 -0.1601 10 14 5.7370 -0.5672 0.9970 11 1 4.8780 -0.1860 2.1468 12 1 6.8291 -1.4563 1.4683 13 1 6.3214 0.6552 0.3892 14 6 4.2017 1.3696 -2.3358 15 8 4.0363 2.5686 -2.2576 16 6 4.6580 0.7550 -3.6340 17 16 4.8699 2.0578 -4.8783 18 6 5.4114 1.1375 -6.3447 19 6 5.6344 2.0964 -7.4856 20 6 6.8776 2.6714 -7.6724 21 6 7.0835 3.5466 -8.7224 22 6 6.0450 3.8509 -9.5824 23 6 6.2697 4.8047 -10.7274 24 6 4.8003 3.2805 -9.3922 25 6 4.5943 2.4050 -8.3424 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8496 0.5530 0.8316 32 1 3.9784 2.1747 0.1091 33 1 4.8777 -3.2447 0.5882 34 1 3.9115 0.0400 -3.9797 35 1 5.6076 0.2428 -3.4794 36 1 4.6456 0.4133 -6.6225 37 1 6.3419 0.6149 -6.1225 38 1 7.6891 2.4330 -7.0009 39 1 8.0560 3.9923 -8.8709 40 1 6.5926 4.2471 -11.6065 41 1 5.3408 5.3293 -10.9509 42 1 7.0382 5.5272 -10.4528 43 1 3.9888 3.5186 -10.0639 44 1 3.6220 1.9590 -8.1941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457183861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:10 Heat of formation + Delta-G solvation = -47.740211 kcal Electronic energy + Delta-G solvation = -24290.061295 eV Core-core repulsion = 20720.223651 eV Total energy + Delta-G solvation = -3569.837645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.44132 -38.94485 -37.04951 -34.85526 -33.92744 -32.02177 -30.97474 -30.45903 -29.39929 -28.16685 -25.81412 -25.03264 -24.63944 -22.76999 -22.44255 -20.90389 -19.12699 -17.32870 -16.52398 -16.15818 -15.86879 -15.61854 -15.52421 -15.41696 -15.13167 -14.74041 -14.66889 -14.19889 -13.93795 -13.70674 -13.49051 -13.31765 -13.12127 -12.80033 -12.68038 -12.51842 -12.26788 -12.04039 -11.79312 -11.62269 -11.55919 -11.27470 -11.12654 -11.00981 -10.92158 -10.77932 -10.19740 -9.95680 -9.56504 -9.24351 -9.09096 -8.96213 -8.67005 -8.46094 -7.86353 -7.19654 -6.47288 -4.05336 1.05176 1.37480 2.15473 3.00016 3.04778 3.20238 3.27673 3.61624 3.78966 4.12726 4.29825 4.44714 4.64262 4.70259 4.84969 4.96759 4.97403 5.01816 5.35767 5.38422 5.42335 5.57441 5.58245 5.63759 5.65893 5.67436 5.74652 5.79511 5.84940 5.92331 5.96039 6.01874 6.02243 6.04102 6.13246 6.27190 6.35016 6.45013 6.51541 6.57309 6.94922 7.29165 7.78589 8.03808 8.20412 8.92296 9.29105 9.60758 10.63485 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.002760 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.800678 B =10141.536000 C =10791.428006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.055 3.945 4 C 0.103 3.897 5 N -0.449 5.449 6 C -0.338 4.338 7 H 0.101 0.899 8 C 0.076 3.924 9 N -0.852 5.852 10 Si 0.870 3.130 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.261 1.261 14 C 0.492 3.508 15 O -0.585 6.585 16 C -0.094 4.094 17 S -0.194 6.194 18 C -0.070 4.070 19 C -0.066 4.066 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.090 4.090 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.099 4.099 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.274 0.726 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.121 0.879 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 7.870 -13.143 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.023 4.023 4 C -0.020 4.020 5 N -0.169 5.169 6 C -0.465 4.465 7 H 0.119 0.881 8 C -0.132 4.132 9 N -0.487 5.487 10 Si 0.697 3.303 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.185 1.185 14 C 0.280 3.720 15 O -0.470 6.470 16 C -0.244 4.244 17 S 0.035 5.965 18 C -0.218 4.218 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.091 4.091 23 C -0.170 4.170 24 C -0.140 4.140 25 C -0.118 4.118 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.139 0.861 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.583 9.138 -12.811 15.747 hybrid contribution 0.386 -1.129 0.832 1.455 sum 0.969 8.009 -11.980 14.442 Atomic orbital electron populations 1.22659 0.82977 1.02084 0.98786 1.88206 1.17735 1.26672 1.95032 1.22861 0.94853 0.85185 0.99417 1.21740 0.92319 0.99174 0.88795 1.43542 1.57632 1.07466 1.08270 1.18921 1.42934 0.79794 1.04811 0.88130 1.25231 0.95793 0.95096 0.97121 1.69774 1.40104 1.08258 1.30518 0.87056 0.80710 0.80654 0.81876 1.20016 1.21361 1.18508 1.19468 0.81024 0.86058 0.85428 1.90581 1.57119 1.14580 1.84672 1.23318 1.06197 0.99445 0.95478 1.87452 1.88983 1.15020 1.05063 1.22395 1.04754 0.99289 0.95363 1.19240 0.94111 0.98180 0.95202 1.21055 0.96796 0.96501 0.97467 1.20980 0.98678 0.98942 0.95371 1.19920 0.93825 0.98189 0.97168 1.20779 1.02421 0.97711 0.96064 1.20980 0.96700 0.97968 0.98339 1.21052 0.98518 0.97748 0.94513 0.94878 0.90085 0.95155 0.93860 0.93179 0.90426 0.89830 0.91563 0.88192 0.87555 0.89427 0.89371 0.85740 0.86099 0.91340 0.91628 0.91623 0.86106 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.70 10.38 -35.23 -0.37 -8.06 16 3 C 0.05 1.10 6.26 37.16 0.23 1.33 16 4 C 0.10 2.30 4.47 -4.04 -0.02 2.28 16 5 N -0.45 -10.79 2.14 -114.81 -0.25 -11.03 16 6 C -0.34 -8.67 8.76 -14.93 -0.13 -8.80 16 7 H 0.10 2.70 7.24 -52.49 -0.38 2.32 16 8 C 0.08 1.99 5.28 -17.47 -0.09 1.89 16 9 N -0.85 -23.37 13.96 55.50 0.77 -22.60 16 10 Si 0.87 20.28 25.06 -169.99 -4.26 16.02 16 11 H -0.27 -6.19 6.67 56.52 0.38 -5.81 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 14 C 0.49 11.49 7.64 -10.99 -0.08 11.41 16 15 O -0.58 -14.69 15.50 5.55 0.09 -14.60 16 16 C -0.09 -1.85 5.12 36.01 0.18 -1.67 16 17 S -0.19 -3.50 20.86 -107.50 -2.24 -5.74 16 18 C -0.07 -0.96 6.07 36.00 0.22 -0.74 16 19 C -0.07 -0.86 5.14 -104.62 -0.54 -1.39 16 20 C -0.10 -1.19 9.70 -39.58 -0.38 -1.58 16 21 C -0.12 -1.31 9.70 -39.59 -0.38 -1.70 16 22 C -0.09 -0.93 5.88 -104.62 -0.62 -1.55 16 23 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 24 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 25 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.79 3.48 -51.93 -0.18 1.61 16 32 H 0.08 1.78 7.52 -51.93 -0.39 1.39 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.10 1.89 7.67 -51.92 -0.40 1.49 16 35 H 0.11 2.03 8.10 -51.92 -0.42 1.61 16 36 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 37 H 0.09 1.11 8.09 -51.92 -0.42 0.69 16 38 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 42 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 44 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -30.95 378.97 -8.28 -39.24 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.84 Total: 3.68 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -0.91 Total: -2.62 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.53 Total: -33.63 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.28 Total: -22.67 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.26 Total: 16.02 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.24 Total: -5.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.95 -8.28 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.503 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds