Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00221 * 2 1 4 4 C 1.52998 * 109.47138 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47308 * 65.00344 * 4 3 2 6 6 C 1.37093 * 119.99975 * 270.00107 * 5 4 3 7 7 H 1.07998 * 120.00224 * 139.96491 * 6 5 4 8 8 C 1.38948 * 120.00147 * 319.96884 * 6 5 4 9 9 N 1.31409 * 120.00399 * 163.85789 * 8 6 5 10 10 Si 1.86808 * 119.99852 * 343.85640 * 8 6 5 11 11 H 1.48497 * 109.47244 * 95.34729 * 10 8 6 12 12 H 1.48497 * 109.46956 * 215.34795 * 10 8 6 13 13 H 1.48499 * 109.46686 * 335.34622 * 10 8 6 14 14 C 1.34776 * 119.99567 * 89.99463 * 5 4 3 15 15 O 1.21292 * 120.00462 * 5.47813 * 14 5 4 16 16 C 1.50704 * 119.99681 * 185.47210 * 14 5 4 17 17 S 1.81402 * 109.47164 * 174.90833 * 16 14 5 18 18 C 1.81398 * 102.99946 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47146 * 179.97438 * 18 17 16 20 20 C 1.38257 * 120.00523 * 270.21401 * 19 18 17 21 21 C 1.38206 * 119.99961 * 180.25373 * 20 19 18 22 22 C 1.38256 * 120.00140 * 359.51149 * 21 20 19 23 23 C 1.38208 * 120.00291 * 0.27819 * 22 21 20 24 24 C 1.50699 * 120.00441 * 179.97438 * 23 22 21 25 25 C 1.38221 * 119.99507 * 90.00189 * 19 18 17 26 26 H 1.09003 * 109.46380 * 299.99247 * 1 2 3 27 27 H 1.08996 * 109.46873 * 59.98900 * 1 2 3 28 28 H 1.08992 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46723 * 60.00521 * 3 2 1 30 30 H 1.08998 * 109.47077 * 300.00691 * 3 2 1 31 31 H 1.08998 * 109.47297 * 305.00058 * 4 3 2 32 32 H 1.09000 * 109.47025 * 185.00100 * 4 3 2 33 33 H 0.97000 * 120.00539 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46836 * 54.91064 * 16 14 5 35 35 H 1.09003 * 109.47144 * 294.91019 * 16 14 5 36 36 H 1.09006 * 109.47095 * 59.99651 * 18 17 16 37 37 H 1.09004 * 109.47326 * 300.00259 * 18 17 16 38 38 H 1.07999 * 119.99631 * 0.04550 * 20 19 18 39 39 H 1.08003 * 120.00077 * 179.78682 * 21 20 19 40 40 H 1.08008 * 119.99989 * 180.25416 * 22 21 20 41 41 H 1.08996 * 109.47157 * 89.99609 * 24 23 22 42 42 H 1.08999 * 109.47006 * 210.00138 * 24 23 22 43 43 H 1.08997 * 109.46592 * 330.00253 * 24 23 22 44 44 H 1.07993 * 120.00033 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2528 6 6 4.0969 -0.7986 -1.3371 7 1 3.7844 -1.3141 -2.2332 8 6 4.6218 -1.5168 -0.2697 9 7 4.4525 -2.8184 -0.2069 10 14 5.5681 -0.6320 1.0761 11 1 4.6526 -0.3227 2.2037 12 1 6.6715 -1.5009 1.5585 13 1 6.1325 0.6309 0.5360 14 6 4.2615 1.3339 -2.3218 15 8 4.2506 2.5424 -2.2195 16 6 4.5947 0.6926 -3.6443 17 16 4.7810 1.9786 -4.9100 18 6 5.1724 1.0270 -6.4040 19 6 5.3592 1.9693 -7.5651 20 6 4.2768 2.3236 -8.3490 21 6 4.4492 3.1836 -9.4171 22 6 5.7021 3.6976 -9.6955 23 6 6.7833 3.3469 -8.9093 24 6 8.1491 3.9067 -9.2131 25 6 6.6119 2.4828 -7.8437 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9786 2.1764 0.0889 33 1 4.8186 -3.3198 0.5384 34 1 3.7915 0.0138 -3.9314 35 1 5.5267 0.1348 -3.5530 36 1 4.3546 0.3401 -6.6218 37 1 6.0898 0.4605 -6.2440 38 1 3.2973 1.9256 -8.1288 39 1 3.6044 3.4577 -10.0316 40 1 5.8360 4.3729 -10.5277 41 1 8.2883 4.8407 -8.6687 42 1 8.9116 3.1905 -8.9070 43 1 8.2351 4.0939 -10.2834 44 1 7.4566 2.2091 -7.2291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457185263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = -63.295338 kcal Electronic energy + Delta-G solvation = -24379.479776 eV Core-core repulsion = 20808.967610 eV Total energy + Delta-G solvation = -3570.512166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80947 -40.28588 -38.64462 -36.74121 -34.46675 -33.98637 -32.86147 -32.13041 -29.89180 -28.32555 -27.54368 -27.26573 -26.57116 -24.12591 -23.03386 -21.72893 -20.98491 -19.05510 -18.29326 -17.67850 -17.45754 -17.10585 -16.91030 -16.58671 -16.37665 -16.24616 -15.87547 -15.79505 -15.42345 -14.84381 -14.71636 -14.38517 -14.33660 -14.12714 -13.95620 -13.75123 -13.62825 -13.45490 -13.15002 -13.05977 -12.89262 -12.67177 -12.60255 -12.42637 -12.00761 -11.96510 -11.87182 -11.70703 -11.15017 -10.97326 -10.69353 -10.48483 -9.77526 -9.68535 -9.46815 -8.63807 -8.45298 -6.11572 0.02722 0.48880 0.91837 1.19103 1.30292 1.40188 1.66771 1.75622 2.19728 2.54738 2.88512 2.91699 3.09197 3.66184 3.82231 3.92009 4.06075 4.07723 4.13333 4.21839 4.23628 4.27247 4.35266 4.45776 4.47117 4.53393 4.54137 4.59372 4.60347 4.61212 4.72422 4.82553 4.83540 4.85712 4.99268 5.15758 5.32062 5.42173 5.55905 5.64838 5.69808 6.04267 6.11996 6.20189 6.36586 6.94903 7.33720 7.67669 8.68579 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.002870 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.656519 B = 9754.429761 C =10402.080280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.060 3.940 4 C 0.092 3.908 5 N -0.461 5.461 6 C -0.325 4.325 7 H 0.082 0.918 8 C 0.037 3.963 9 N -0.898 5.898 10 Si 0.925 3.075 11 H -0.261 1.261 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.492 3.508 15 O -0.601 6.601 16 C -0.087 4.087 17 S -0.228 6.228 18 C -0.053 4.053 19 C -0.077 4.077 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.112 4.112 25 C -0.119 4.119 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.277 0.723 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 8.958 -13.795 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.017 4.017 4 C -0.030 4.030 5 N -0.182 5.182 6 C -0.453 4.453 7 H 0.099 0.901 8 C -0.167 4.167 9 N -0.535 5.535 10 Si 0.752 3.248 11 H -0.188 1.188 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.281 3.719 15 O -0.487 6.487 16 C -0.237 4.237 17 S 0.001 5.999 18 C -0.200 4.200 19 C -0.079 4.079 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.097 4.097 24 C -0.169 4.169 25 C -0.139 4.139 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.146 0.854 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.432 10.244 -13.437 16.902 hybrid contribution 0.136 -1.447 0.978 1.752 sum 0.568 8.797 -12.458 15.261 Atomic orbital electron populations 1.22868 0.80459 1.03172 1.00452 1.88152 1.20626 1.27401 1.95350 1.22806 0.93028 0.85207 1.00700 1.21890 0.94354 0.98903 0.87889 1.43624 1.58209 1.06490 1.09914 1.18772 1.42056 0.79674 1.04788 0.90085 1.25730 0.96142 0.95486 0.99308 1.69767 1.43244 1.07836 1.32649 0.86159 0.79047 0.79084 0.80485 1.18752 1.21265 1.19177 1.20003 0.79184 0.86297 0.86427 1.90561 1.57686 1.14886 1.85565 1.23174 1.06628 0.99872 0.94073 1.87481 1.93476 1.15505 1.03487 1.22413 1.05870 0.99036 0.92692 1.19270 0.94636 0.98839 0.95143 1.21246 0.98383 0.98817 0.95759 1.21418 0.98339 0.96859 0.97257 1.21399 0.92219 1.00210 1.00295 1.20236 0.97440 0.96924 0.95081 1.20828 0.91822 1.01186 1.03052 1.21128 0.96824 0.98014 0.97886 0.92560 0.93994 0.89436 0.90300 0.93914 0.91694 0.88922 0.91300 0.87770 0.87248 0.88357 0.88457 0.85380 0.83657 0.83630 0.90770 0.91146 0.89926 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.55 10.18 -148.98 -1.52 -18.06 16 3 C 0.06 2.31 6.28 71.98 0.45 2.76 16 4 C 0.09 4.05 4.59 86.38 0.40 4.45 16 5 N -0.46 -22.23 2.14 -635.54 -1.36 -23.59 16 6 C -0.33 -16.97 8.64 84.04 0.73 -16.25 16 7 H 0.08 4.48 7.18 -2.91 -0.02 4.46 16 8 C 0.04 1.99 5.39 84.93 0.46 2.44 16 9 N -0.90 -50.14 13.96 21.66 0.30 -49.83 16 10 Si 0.93 42.39 24.75 68.60 1.70 44.09 16 11 H -0.26 -11.37 6.77 99.48 0.67 -10.69 16 12 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.34 7.05 99.48 0.70 -11.64 16 14 C 0.49 23.10 7.64 87.66 0.67 23.77 16 15 O -0.60 -30.28 15.43 -3.07 -0.05 -30.33 16 16 C -0.09 -3.47 5.14 71.24 0.37 -3.11 16 17 S -0.23 -8.24 20.86 -56.49 -1.18 -9.42 16 18 C -0.05 -1.42 6.07 71.24 0.43 -0.99 16 19 C -0.08 -1.96 5.14 -19.86 -0.10 -2.06 16 20 C -0.12 -2.80 9.70 22.27 0.22 -2.59 16 21 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 22 C -0.12 -2.20 9.70 22.27 0.22 -1.99 16 23 C -0.10 -1.93 5.88 -19.87 -0.12 -2.04 16 24 C -0.11 -1.60 10.01 71.24 0.71 -0.88 16 25 C -0.12 -2.81 9.36 22.27 0.21 -2.60 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.07 2.93 3.13 -2.39 -0.01 2.92 16 32 H 0.09 3.90 7.35 -2.39 -0.02 3.88 16 33 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.10 4.02 7.58 -2.39 -0.02 4.00 16 35 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 36 H 0.10 2.42 8.09 -2.39 -0.02 2.40 16 37 H 0.10 2.42 8.09 -2.39 -0.02 2.40 16 38 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 43 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 44 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -66.56 377.96 4.94 -61.62 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.94 Total: 24.64 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.11 Total: 0.90 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.06 Total: -73.43 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -1.56 Total: -48.39 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.70 Total: 44.09 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.18 Total: -9.42 kcal Total: -66.56 4.94 -61.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457185263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.680 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds