Wall clock time and date at job start Tue Mar 31 2020 13:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 119.99692 * 2 1 4 4 C 1.38219 * 120.00117 * 179.78645 * 3 2 1 5 5 C 1.38258 * 119.99463 * 0.42253 * 4 3 2 6 6 C 1.50699 * 119.99753 * 179.80631 * 5 4 3 7 7 C 1.53006 * 109.47264 * 269.72539 * 6 5 4 8 8 H 1.09007 * 109.46427 * 55.00269 * 7 6 5 9 9 C 1.53001 * 109.47065 * 174.99836 * 7 6 5 10 10 O 1.42900 * 109.47066 * 55.00133 * 9 7 6 11 11 N 1.46497 * 109.47036 * 294.99981 * 7 6 5 12 12 C 1.34777 * 119.99525 * 154.99621 * 11 7 6 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 7 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 7 15 15 S 1.80997 * 109.47151 * 180.27780 * 14 12 11 16 16 C 1.76196 * 100.00314 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00626 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00336 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99494 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47141 * 90.00156 * 20 18 16 22 22 H 1.48505 * 109.47177 * 209.99950 * 20 18 16 23 23 H 1.48496 * 109.47259 * 329.99923 * 20 18 16 24 24 C 1.38207 * 120.00091 * 359.53473 * 5 4 3 25 25 C 1.38215 * 120.00147 * 179.97438 * 2 1 3 26 26 C 1.50701 * 120.00156 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47113 * 270.01811 * 1 2 3 28 28 H 1.08992 * 109.47221 * 30.02666 * 1 2 3 29 29 H 1.09002 * 109.46741 * 150.02206 * 1 2 3 30 30 H 1.07999 * 120.00331 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.00106 * 180.22820 * 4 3 2 32 32 H 1.09002 * 109.47006 * 149.72998 * 6 5 4 33 33 H 1.09003 * 109.47387 * 29.72899 * 6 5 4 34 34 H 1.09000 * 109.46655 * 175.00093 * 9 7 6 35 35 H 1.09004 * 109.47200 * 295.00218 * 9 7 6 36 36 H 0.96697 * 113.99844 * 179.97438 * 10 9 7 37 37 H 0.97000 * 120.00580 * 335.00367 * 11 7 6 38 38 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 39 39 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 40 40 H 0.97003 * 119.99714 * 180.02562 * 19 18 16 41 41 H 1.08005 * 119.99964 * 180.24995 * 24 5 4 42 42 H 1.09000 * 109.46881 * 270.02405 * 26 25 2 43 43 H 1.08996 * 109.46822 * 30.02341 * 26 25 2 44 44 H 1.08998 * 109.46860 * 150.02004 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0045 5 6 4.2717 0.0001 0.0001 6 6 5.7787 0.0002 0.0005 7 6 6.2892 -0.0012 -1.4418 8 1 5.8546 0.8402 -1.9817 9 6 7.8140 0.1246 -1.4433 10 8 8.3783 -0.9124 -0.6382 11 7 5.9019 -1.2537 -2.0957 12 6 5.7754 -1.3026 -3.4366 13 8 5.9827 -0.3100 -4.1020 14 6 5.3830 -2.5926 -4.1098 15 16 5.3056 -2.3395 -5.9003 16 6 4.8403 -3.9580 -6.4183 17 1 4.6943 -4.7383 -5.6860 18 6 4.6602 -4.2301 -7.7674 19 7 4.3121 -5.4391 -8.1543 20 14 4.9119 -2.8803 -9.0340 21 1 6.3288 -2.8765 -9.4786 22 1 4.0275 -3.1258 -10.2015 23 1 4.5794 -1.5655 -8.4291 24 6 3.5807 -1.1968 0.0010 25 6 2.1981 -1.1970 0.0005 26 6 1.4447 -2.5021 0.0017 27 1 -0.3633 0.0003 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6582 2.1326 0.0004 31 1 4.1203 2.1327 0.0082 32 1 6.1419 -0.8894 0.5153 33 1 6.1419 0.8906 0.5137 34 1 8.1850 0.0345 -2.4643 35 1 8.0989 1.0954 -1.0375 36 1 9.3441 -0.8944 -0.5938 37 1 5.7363 -2.0476 -1.5636 38 1 6.1228 -3.3605 -3.8831 39 1 4.4062 -2.9102 -3.7452 40 1 4.1866 -5.6292 -9.0972 41 1 4.1207 -2.1321 0.0017 42 1 1.2631 -2.8158 1.0297 43 1 0.4923 -2.3722 -0.5122 44 1 2.0338 -3.2621 -0.5115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457344310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:51 Heat of formation + Delta-G solvation = -82.670906 kcal Electronic energy + Delta-G solvation = -24812.268215 eV Core-core repulsion = 21240.915861 eV Total energy + Delta-G solvation = -3571.352353 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13486 -39.21591 -37.24868 -35.30048 -33.53959 -32.41840 -32.27220 -31.07500 -28.89226 -27.89516 -27.00141 -25.58576 -24.83301 -22.27871 -21.70766 -20.29440 -20.05158 -17.88380 -17.59850 -16.35931 -16.33084 -15.96219 -15.69974 -15.30891 -14.98228 -14.80351 -14.41539 -14.32288 -14.02341 -13.75990 -13.27840 -13.22949 -13.01995 -12.92505 -12.89647 -12.77678 -12.39508 -12.17280 -12.05346 -11.85045 -11.65726 -11.28488 -11.24473 -10.99644 -10.98435 -10.86174 -10.57162 -10.19037 -9.83578 -9.44411 -8.99313 -8.91828 -8.79801 -8.47074 -8.46094 -6.88556 -6.26932 -3.97982 1.24646 1.32710 2.80724 3.03402 3.32864 3.36434 3.52010 3.60749 3.69910 4.15151 4.34979 4.50891 4.64965 4.72878 4.76843 4.87093 4.89833 4.99600 5.11460 5.12526 5.18254 5.22922 5.30395 5.34213 5.37861 5.48069 5.52793 5.59229 5.62030 5.67791 5.72242 5.77132 5.82401 5.94802 6.05357 6.06982 6.15443 6.36677 6.48849 6.58612 6.66015 6.95984 7.44442 7.71245 7.96295 8.43956 8.56213 9.19483 10.82402 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.003697 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.951664 B = 7572.552205 C = 9168.799932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.115 4.115 4 C -0.120 4.120 5 C -0.082 4.082 6 C -0.081 4.081 7 C 0.157 3.843 8 H 0.100 0.900 9 C 0.062 3.938 10 O -0.569 6.569 11 N -0.720 5.720 12 C 0.533 3.467 13 O -0.525 6.525 14 C -0.123 4.123 15 S -0.142 6.142 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.107 4.107 25 C -0.082 4.082 26 C -0.119 4.119 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.377 0.623 37 H 0.399 0.601 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.270 0.730 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 11.602 22.122 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.082 4.082 6 C -0.119 4.119 7 C 0.052 3.948 8 H 0.118 0.882 9 C -0.017 4.017 10 O -0.374 6.374 11 N -0.373 5.373 12 C 0.319 3.681 13 O -0.400 6.400 14 C -0.273 4.273 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.518 5.518 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.125 4.125 25 C -0.082 4.082 26 C -0.176 4.176 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.224 0.776 37 H 0.234 0.766 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.799 12.980 20.935 24.646 hybrid contribution 0.396 -1.003 0.160 1.090 sum -0.403 11.978 21.095 24.262 Atomic orbital electron populations 1.20850 0.91471 1.02984 1.02043 1.19746 0.95933 0.92728 1.00814 1.20962 0.94162 0.97345 1.00830 1.20965 0.94161 0.97415 1.01229 1.19766 0.95233 0.93238 0.99980 1.20780 0.91004 1.04270 0.95849 1.20961 0.92001 0.88965 0.92891 0.88218 1.22685 0.94175 0.89915 0.94911 1.86444 1.25243 1.53676 1.72043 1.45891 1.71681 1.12977 1.06796 1.20253 0.76004 0.90151 0.81663 1.90680 1.49146 1.36465 1.63732 1.23264 1.04900 0.97534 1.01650 1.84748 1.91248 1.18559 0.97012 1.22328 1.53784 0.94231 0.96449 0.89426 1.24701 0.93293 0.95548 0.97702 1.69942 1.45322 1.19638 1.16888 0.86744 0.79304 0.84045 0.81806 1.19239 1.19964 1.15938 1.20861 0.93389 0.97455 1.00841 1.19754 0.93687 0.94923 0.99810 1.20878 1.00407 0.94165 1.02125 0.91404 0.91722 0.91056 0.86303 0.86295 0.89546 0.89803 0.92580 0.93027 0.77609 0.76621 0.88597 0.88624 0.91982 0.86315 0.91306 0.91082 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.60 36.01 0.35 -0.66 16 2 C -0.09 -1.01 5.88 -104.62 -0.62 -1.62 16 3 C -0.11 -1.22 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.08 -0.89 4.95 -104.63 -0.52 -1.40 16 6 C -0.08 -0.77 4.61 -27.88 -0.13 -0.89 16 7 C 0.16 1.83 2.36 -67.93 -0.16 1.67 16 8 H 0.10 1.33 7.58 -51.93 -0.39 0.93 16 9 C 0.06 0.65 6.85 37.16 0.25 0.90 16 10 O -0.57 -5.49 12.83 -35.23 -0.45 -5.94 16 11 N -0.72 -9.77 4.47 -53.80 -0.24 -10.01 16 12 C 0.53 9.73 7.81 -10.98 -0.09 9.64 16 13 O -0.53 -11.37 15.53 5.55 0.09 -11.28 16 14 C -0.12 -2.46 6.16 36.01 0.22 -2.24 16 15 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 16 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 17 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 18 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 19 N -0.88 -26.80 13.97 55.49 0.78 -26.02 16 20 Si 0.86 22.00 27.74 -169.99 -4.72 17.29 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 24 C -0.11 -1.19 8.75 -39.59 -0.35 -1.54 16 25 C -0.08 -0.91 5.88 -104.62 -0.62 -1.53 16 26 C -0.12 -1.12 9.60 36.01 0.35 -0.77 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.09 0.81 7.67 -51.93 -0.40 0.41 16 33 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.38 2.17 9.12 45.56 0.42 2.59 16 37 H 0.40 4.70 7.83 -40.82 -0.32 4.38 16 38 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 39 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.12 1.17 7.57 -52.48 -0.40 0.77 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.63 5.95 -51.93 -0.31 0.32 16 44 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -35.28 378.66 -8.62 -43.90 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.93 Total: 5.85 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.85 Total: -13.83 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.53 Total: -36.04 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.37 Total: -17.23 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.28 -8.62 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457344310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.774 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds