Wall clock time and date at job start Tue Mar 31 2020 13:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 119.99692 * 2 1 4 4 C 1.38219 * 120.00117 * 179.78645 * 3 2 1 5 5 C 1.38258 * 119.99463 * 0.42253 * 4 3 2 6 6 C 1.50699 * 119.99753 * 179.80631 * 5 4 3 7 7 C 1.53006 * 109.47264 * 269.72539 * 6 5 4 8 8 H 1.09007 * 109.46427 * 55.00269 * 7 6 5 9 9 C 1.53001 * 109.47065 * 174.99836 * 7 6 5 10 10 O 1.42900 * 109.47066 * 55.00133 * 9 7 6 11 11 N 1.46497 * 109.47036 * 294.99981 * 7 6 5 12 12 C 1.34777 * 119.99525 * 154.99621 * 11 7 6 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 7 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 7 15 15 S 1.80997 * 109.47151 * 180.27780 * 14 12 11 16 16 C 1.76196 * 100.00314 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00626 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00336 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99494 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47141 * 90.00156 * 20 18 16 22 22 H 1.48505 * 109.47177 * 209.99950 * 20 18 16 23 23 H 1.48496 * 109.47259 * 329.99923 * 20 18 16 24 24 C 1.38207 * 120.00091 * 359.53473 * 5 4 3 25 25 C 1.38215 * 120.00147 * 179.97438 * 2 1 3 26 26 C 1.50701 * 120.00156 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47113 * 270.01811 * 1 2 3 28 28 H 1.08992 * 109.47221 * 30.02666 * 1 2 3 29 29 H 1.09002 * 109.46741 * 150.02206 * 1 2 3 30 30 H 1.07999 * 120.00331 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.00106 * 180.22820 * 4 3 2 32 32 H 1.09002 * 109.47006 * 149.72998 * 6 5 4 33 33 H 1.09003 * 109.47387 * 29.72899 * 6 5 4 34 34 H 1.09000 * 109.46655 * 175.00093 * 9 7 6 35 35 H 1.09004 * 109.47200 * 295.00218 * 9 7 6 36 36 H 0.96697 * 113.99844 * 179.97438 * 10 9 7 37 37 H 0.97000 * 120.00580 * 335.00367 * 11 7 6 38 38 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 39 39 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 40 40 H 0.97003 * 119.99714 * 180.02562 * 19 18 16 41 41 H 1.08005 * 119.99964 * 180.24995 * 24 5 4 42 42 H 1.09000 * 109.46881 * 270.02405 * 26 25 2 43 43 H 1.08996 * 109.46822 * 30.02341 * 26 25 2 44 44 H 1.08998 * 109.46860 * 150.02004 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0045 5 6 4.2717 0.0001 0.0001 6 6 5.7787 0.0002 0.0005 7 6 6.2892 -0.0012 -1.4418 8 1 5.8546 0.8402 -1.9817 9 6 7.8140 0.1246 -1.4433 10 8 8.3783 -0.9124 -0.6382 11 7 5.9019 -1.2537 -2.0957 12 6 5.7754 -1.3026 -3.4366 13 8 5.9827 -0.3100 -4.1020 14 6 5.3830 -2.5926 -4.1098 15 16 5.3056 -2.3395 -5.9003 16 6 4.8403 -3.9580 -6.4183 17 1 4.6943 -4.7383 -5.6860 18 6 4.6602 -4.2301 -7.7674 19 7 4.3121 -5.4391 -8.1543 20 14 4.9119 -2.8803 -9.0340 21 1 6.3288 -2.8765 -9.4786 22 1 4.0275 -3.1258 -10.2015 23 1 4.5794 -1.5655 -8.4291 24 6 3.5807 -1.1968 0.0010 25 6 2.1981 -1.1970 0.0005 26 6 1.4447 -2.5021 0.0017 27 1 -0.3633 0.0003 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6582 2.1326 0.0004 31 1 4.1203 2.1327 0.0082 32 1 6.1419 -0.8894 0.5153 33 1 6.1419 0.8906 0.5137 34 1 8.1850 0.0345 -2.4643 35 1 8.0989 1.0954 -1.0375 36 1 9.3441 -0.8944 -0.5938 37 1 5.7363 -2.0476 -1.5636 38 1 6.1228 -3.3605 -3.8831 39 1 4.4062 -2.9102 -3.7452 40 1 4.1866 -5.6292 -9.0972 41 1 4.1207 -2.1321 0.0017 42 1 1.2631 -2.8158 1.0297 43 1 0.4923 -2.3722 -0.5122 44 1 2.0338 -3.2621 -0.5115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457344310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:51 Heat of formation + Delta-G solvation = -106.844068 kcal Electronic energy + Delta-G solvation = -24813.316442 eV Core-core repulsion = 21240.915861 eV Total energy + Delta-G solvation = -3572.400580 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14691 -40.30538 -38.21988 -36.18333 -34.68688 -34.53364 -33.07589 -32.20104 -30.16114 -28.77247 -27.87474 -27.75765 -25.59468 -23.13046 -22.71462 -21.52564 -20.88263 -19.88161 -18.52740 -17.74961 -17.42817 -17.08831 -16.78917 -16.63868 -16.46217 -15.90309 -15.65928 -15.35649 -15.11241 -14.95362 -14.80033 -14.52350 -14.01483 -13.89527 -13.73156 -13.60807 -13.58713 -13.35582 -13.15143 -13.02335 -12.83175 -12.69235 -12.59470 -12.52051 -12.08197 -11.87447 -11.75361 -11.63845 -11.17756 -11.08364 -10.83752 -10.55139 -10.11617 -9.60353 -9.25728 -9.00167 -8.52172 -6.22946 0.44799 0.52303 0.97945 1.30407 1.45978 1.55147 1.57649 2.22324 2.26653 2.71302 2.80839 2.86100 3.40216 3.69161 3.84044 3.90190 4.00440 4.06599 4.15895 4.19403 4.27656 4.29470 4.42128 4.43693 4.49046 4.56055 4.70792 4.71288 4.75263 4.82025 4.86877 4.88920 5.00793 5.04200 5.14138 5.29454 5.42036 5.47110 5.58153 5.70099 5.74406 5.80152 6.10533 6.19280 6.47338 6.88866 6.92949 7.19515 8.60450 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.003697 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.951664 B = 7572.552205 C = 9168.799932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.093 4.093 6 C -0.068 4.068 7 C 0.153 3.847 8 H 0.084 0.916 9 C 0.069 3.931 10 O -0.577 6.577 11 N -0.698 5.698 12 C 0.538 3.462 13 O -0.563 6.563 14 C -0.111 4.111 15 S -0.171 6.171 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.048 3.952 19 N -0.917 5.917 20 Si 0.914 3.086 21 H -0.261 1.261 22 H -0.258 1.258 23 H -0.238 1.238 24 C -0.122 4.122 25 C -0.100 4.100 26 C -0.118 4.118 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.029 0.971 35 H 0.081 0.919 36 H 0.395 0.605 37 H 0.410 0.590 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.277 0.723 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 12.936 23.545 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.107 4.107 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.093 4.093 6 C -0.105 4.105 7 C 0.049 3.951 8 H 0.102 0.898 9 C -0.010 4.010 10 O -0.385 6.385 11 N -0.351 5.351 12 C 0.323 3.677 13 O -0.441 6.441 14 C -0.262 4.262 15 S 0.056 5.944 16 C -0.678 4.678 17 H 0.079 0.921 18 C -0.158 4.158 19 N -0.555 5.555 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.182 1.182 23 H -0.162 1.162 24 C -0.140 4.140 25 C -0.100 4.100 26 C -0.175 4.175 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.245 0.755 37 H 0.247 0.753 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.144 0.856 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.330 14.295 22.411 26.584 hybrid contribution 0.261 -1.447 -0.095 1.474 sum -0.069 12.848 22.316 25.750 Atomic orbital electron populations 1.20879 0.90170 1.03244 1.02933 1.20089 0.97174 0.92840 1.00645 1.21263 0.94575 0.98020 1.00725 1.21267 0.94454 0.98176 1.00884 1.19960 0.95980 0.93241 1.00093 1.20712 0.90054 1.05596 0.94151 1.21153 0.93190 0.87046 0.93749 0.89787 1.22521 0.92932 0.91585 0.93930 1.86393 1.27090 1.53512 1.71524 1.45736 1.69753 1.14425 1.05159 1.19878 0.76084 0.88729 0.82993 1.90669 1.51321 1.37287 1.64858 1.23252 1.06185 0.99327 0.97439 1.84637 1.91182 1.16367 1.02228 1.22465 1.53667 0.95323 0.96339 0.92138 1.25544 0.92985 0.97648 0.99605 1.70017 1.46264 1.21388 1.17824 0.85879 0.79750 0.81091 0.79727 1.18576 1.18222 1.16160 1.21087 0.93688 0.98073 1.01189 1.20050 0.94126 0.95736 1.00126 1.20895 1.00236 0.93397 1.02939 0.90142 0.91211 0.91033 0.84811 0.84623 0.89055 0.87550 0.95223 0.90092 0.75487 0.75324 0.87265 0.87486 0.91340 0.85568 0.90017 0.90847 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.60 71.24 0.68 -1.17 16 2 C -0.11 -2.24 5.88 -19.87 -0.12 -2.35 16 3 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 4 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 5 C -0.09 -1.84 4.95 -19.87 -0.10 -1.94 16 6 C -0.07 -1.10 4.61 29.85 0.14 -0.96 16 7 C 0.15 3.28 2.36 44.99 0.11 3.39 16 8 H 0.08 2.13 7.58 -2.38 -0.02 2.11 16 9 C 0.07 1.29 6.85 71.98 0.49 1.79 16 10 O -0.58 -9.55 12.83 -148.98 -1.91 -11.46 16 11 N -0.70 -17.93 4.47 -442.52 -1.98 -19.91 16 12 C 0.54 19.20 7.81 87.66 0.68 19.89 16 13 O -0.56 -24.23 15.53 -3.04 -0.05 -24.28 16 14 C -0.11 -4.39 6.16 71.24 0.44 -3.95 16 15 S -0.17 -8.80 18.55 -56.49 -1.05 -9.85 16 16 C -0.53 -31.39 10.04 67.95 0.68 -30.71 16 17 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 18 C 0.05 2.82 5.50 84.86 0.47 3.29 16 19 N -0.92 -56.30 13.97 21.65 0.30 -56.00 16 20 Si 0.91 45.40 27.74 68.60 1.90 47.31 16 21 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 24 C -0.12 -2.57 8.75 22.27 0.19 -2.38 16 25 C -0.10 -2.16 5.88 -19.87 -0.12 -2.28 16 26 C -0.12 -2.13 9.60 71.24 0.68 -1.44 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 29 H 0.07 1.12 5.95 -2.39 -0.01 1.11 16 30 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.09 1.44 7.67 -2.39 -0.02 1.42 16 33 H 0.11 1.30 8.08 -2.39 -0.02 1.28 16 34 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.40 3.44 9.12 -74.06 -0.68 2.77 16 37 H 0.41 8.88 7.83 -92.71 -0.73 8.15 16 38 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 39 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 40 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.13 2.32 7.57 -2.91 -0.02 2.29 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.26 5.95 -2.39 -0.01 1.24 16 44 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 Total: -1.00 -76.15 378.66 1.47 -74.68 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.42 Total: 23.01 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.67 Total: -23.50 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.68 Total: -75.91 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.96 Total: -35.73 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -76.15 1.47 -74.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457344310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.167 kcal (2) G-P(sol) polarization free energy of solvation -76.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds