Wall clock time and date at job start Tue Mar 31 2020 13:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00368 * 2 1 4 4 C 1.38215 * 120.00106 * 180.20909 * 3 2 1 5 5 C 1.38258 * 119.99945 * 359.85085 * 4 3 2 6 6 C 1.50699 * 120.00032 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47429 * 269.98442 * 6 5 4 8 8 H 1.08996 * 109.46936 * 304.99737 * 7 6 5 9 9 C 1.53007 * 109.47207 * 185.00179 * 7 6 5 10 10 O 1.42898 * 109.46642 * 304.99885 * 9 7 6 11 11 N 1.46498 * 109.47310 * 64.99888 * 7 6 5 12 12 C 1.34774 * 120.00027 * 204.99979 * 11 7 6 13 13 O 1.21280 * 120.00105 * 0.02562 * 12 11 7 14 14 C 1.50708 * 119.99875 * 179.97438 * 12 11 7 15 15 S 1.81002 * 109.46816 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99481 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00652 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99604 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99430 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00086 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47301 * 89.99942 * 20 18 16 22 22 H 1.48504 * 109.47334 * 209.99855 * 20 18 16 23 23 H 1.48499 * 109.47387 * 330.00132 * 20 18 16 24 24 C 1.38212 * 119.99786 * 359.96574 * 5 4 3 25 25 C 1.38218 * 119.99818 * 179.80879 * 2 1 3 26 26 C 1.50703 * 119.99968 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47734 * 270.19185 * 1 2 3 28 28 H 1.09002 * 109.46829 * 30.19130 * 1 2 3 29 29 H 1.09000 * 109.47496 * 150.18444 * 1 2 3 30 30 H 1.08000 * 120.00288 * 0.04136 * 3 2 1 31 31 H 1.08003 * 119.99976 * 179.83615 * 4 3 2 32 32 H 1.09004 * 109.47169 * 29.98781 * 6 5 4 33 33 H 1.09004 * 109.46787 * 149.98135 * 6 5 4 34 34 H 1.08996 * 109.47148 * 64.99353 * 9 7 6 35 35 H 1.08995 * 109.46927 * 185.00017 * 9 7 6 36 36 H 0.96704 * 113.99536 * 180.02562 * 10 9 7 37 37 H 0.97000 * 119.99383 * 25.00309 * 11 7 6 38 38 H 1.08998 * 109.47078 * 299.99964 * 14 12 11 39 39 H 1.08996 * 109.46766 * 60.00202 * 14 12 11 40 40 H 0.97004 * 119.99060 * 180.02562 * 19 18 16 41 41 H 1.08005 * 119.99681 * 180.02562 * 24 5 4 42 42 H 1.09002 * 109.47152 * 269.72462 * 26 25 2 43 43 H 1.09001 * 109.46980 * 149.72562 * 26 25 2 44 44 H 1.09004 * 109.47113 * 29.72543 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0044 5 6 4.2717 -0.0002 -0.0056 6 6 5.7786 -0.0003 -0.0110 7 6 6.2836 -0.0021 -1.4552 8 1 5.8471 -0.8446 -1.9916 9 6 7.8084 -0.1280 -1.4622 10 8 8.3757 0.9108 -0.6616 11 7 5.8938 1.2488 -2.1105 12 6 5.7623 1.2948 -3.4510 13 8 5.9662 0.3005 -4.1148 14 6 5.3608 2.5816 -4.1250 15 16 5.2696 2.3226 -5.9140 16 6 4.7939 3.9378 -6.4331 17 1 4.6519 4.7201 -5.7021 18 6 4.6028 4.2052 -7.7817 19 7 4.2480 5.4121 -8.1694 20 14 4.8491 2.8526 -9.0461 21 1 3.5662 2.1362 -9.2611 22 1 5.3034 3.4496 -10.3277 23 1 5.8736 1.8963 -8.5549 24 6 3.5805 -1.1971 -0.0018 25 6 2.1980 -1.1970 0.0040 26 6 1.4444 -2.5021 0.0078 27 1 -0.3634 0.0034 1.0276 28 1 -0.3633 0.8883 -0.5168 29 1 -0.3634 -0.8916 -0.5109 30 1 1.6584 2.1326 0.0007 31 1 4.1205 2.1325 -0.0070 32 1 6.1439 0.8903 0.5005 33 1 6.1437 -0.8896 0.5028 34 1 8.0948 -1.0977 -1.0553 35 1 8.1755 -0.0402 -2.4847 36 1 9.3417 0.8929 -0.6208 37 1 5.7304 2.0439 -1.5794 38 1 4.3858 2.8973 -3.7538 39 1 6.0999 3.3523 -3.9063 40 1 4.1141 5.5988 -9.1118 41 1 4.1205 -2.1324 -0.0023 42 1 1.2666 -2.8160 1.0363 43 1 2.0316 -3.2621 -0.5077 44 1 0.4901 -2.3721 -0.5026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457344311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:54 Heat of formation + Delta-G solvation = -82.632905 kcal Electronic energy + Delta-G solvation = -24699.308295 eV Core-core repulsion = 21127.957590 eV Total energy + Delta-G solvation = -3571.350705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13585 -39.22433 -37.25043 -35.31736 -33.46966 -32.41919 -32.39145 -31.04591 -28.91222 -27.76209 -27.17369 -25.58352 -24.81571 -22.24506 -21.74813 -20.29677 -20.07101 -17.86541 -17.59488 -16.44193 -16.30249 -15.91421 -15.72095 -15.30933 -14.97922 -14.79029 -14.45721 -14.31421 -14.04378 -13.80580 -13.26628 -13.21993 -13.02215 -12.95893 -12.89076 -12.77079 -12.45072 -12.26343 -12.05288 -11.82664 -11.64671 -11.30433 -11.24380 -10.99753 -10.99000 -10.86802 -10.56977 -10.19166 -9.83496 -9.44377 -8.99743 -8.94298 -8.77008 -8.47434 -8.46867 -6.88416 -6.26822 -3.97811 1.24399 1.32220 2.80836 3.03491 3.33055 3.36572 3.51882 3.60447 3.70036 4.15079 4.35085 4.50552 4.62679 4.72207 4.76783 4.87045 4.89248 4.97044 5.10958 5.12397 5.17499 5.22857 5.26843 5.32625 5.34965 5.45922 5.48913 5.59281 5.62376 5.66343 5.67880 5.75108 5.82487 5.90790 6.06545 6.07705 6.11686 6.36857 6.49399 6.56785 6.66104 6.95611 7.44329 7.71399 7.96503 8.44254 8.56292 9.19561 10.82541 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.003514 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.720412 B = 7967.022283 C = 9469.850827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.082 4.082 6 C -0.081 4.081 7 C 0.157 3.843 8 H 0.100 0.900 9 C 0.062 3.938 10 O -0.569 6.569 11 N -0.720 5.720 12 C 0.533 3.467 13 O -0.525 6.525 14 C -0.123 4.123 15 S -0.142 6.142 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.114 4.114 25 C -0.086 4.086 26 C -0.117 4.117 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.377 0.623 37 H 0.400 0.600 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.270 0.730 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 -13.219 22.126 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.091 4.091 3 C -0.130 4.130 4 C -0.130 4.130 5 C -0.082 4.082 6 C -0.119 4.119 7 C 0.052 3.948 8 H 0.118 0.882 9 C -0.017 4.017 10 O -0.374 6.374 11 N -0.374 5.374 12 C 0.319 3.681 13 O -0.400 6.400 14 C -0.274 4.274 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.518 5.518 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.132 4.132 25 C -0.086 4.086 26 C -0.173 4.173 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.224 0.776 37 H 0.234 0.766 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.466 -14.606 20.942 25.537 hybrid contribution 0.332 1.140 0.164 1.199 sum -0.134 -13.466 21.106 25.036 Atomic orbital electron populations 1.20852 0.91466 1.03000 1.02050 1.19743 0.95932 0.92717 1.00744 1.21014 0.94224 0.97482 1.00322 1.20969 0.94118 0.97402 1.00525 1.19768 0.95236 0.93235 0.99986 1.20777 0.91018 1.04277 0.95825 1.20958 0.91997 0.89004 0.92854 0.88239 1.22684 0.94145 0.89879 0.94981 1.86446 1.25174 1.53523 1.72260 1.45893 1.71643 1.12984 1.06837 1.20254 0.76021 0.90136 0.81657 1.90679 1.49288 1.36264 1.63800 1.23267 1.04861 0.97601 1.01632 1.84745 1.91002 1.18817 0.97019 1.22331 1.53426 0.94490 0.96539 0.89424 1.24711 0.93308 0.95575 0.97706 1.69947 1.45086 1.19848 1.16909 0.86735 0.80819 0.82854 0.81440 1.19230 1.19968 1.15944 1.20858 0.93428 0.97479 1.01430 1.19714 0.93663 0.94848 1.00420 1.20851 1.00249 0.94155 1.02066 0.91397 0.91520 0.91227 0.86079 0.86300 0.89510 0.89833 0.93036 0.92581 0.77607 0.76598 0.88634 0.88552 0.91983 0.86296 0.91366 0.91653 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.60 36.00 0.35 -0.66 16 2 C -0.09 -1.00 5.88 -104.63 -0.62 -1.61 16 3 C -0.11 -1.25 9.70 -39.58 -0.38 -1.64 16 4 C -0.11 -1.23 9.10 -39.58 -0.36 -1.59 16 5 C -0.08 -0.89 4.95 -104.62 -0.52 -1.40 16 6 C -0.08 -0.76 4.61 -27.88 -0.13 -0.89 16 7 C 0.16 1.83 2.36 -67.93 -0.16 1.67 16 8 H 0.10 1.33 7.58 -51.93 -0.39 0.93 16 9 C 0.06 0.65 6.85 37.16 0.25 0.90 16 10 O -0.57 -5.49 12.83 -35.23 -0.45 -5.94 16 11 N -0.72 -9.78 4.47 -53.80 -0.24 -10.02 16 12 C 0.53 9.74 7.81 -10.98 -0.09 9.65 16 13 O -0.53 -11.38 15.52 5.56 0.09 -11.29 16 14 C -0.12 -2.47 6.16 36.01 0.22 -2.24 16 15 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 16 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 17 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 18 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 19 N -0.88 -26.86 13.97 55.49 0.78 -26.09 16 20 Si 0.86 22.04 27.74 -169.99 -4.71 17.32 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.24 -6.05 6.74 56.52 0.38 -5.66 16 24 C -0.11 -1.22 9.36 -39.59 -0.37 -1.59 16 25 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16 26 C -0.12 -0.96 9.61 36.01 0.35 -0.61 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.14 7.57 -52.48 -0.40 0.74 16 32 H 0.09 0.81 7.67 -51.93 -0.40 0.41 16 33 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.38 2.17 9.12 45.56 0.42 2.58 16 37 H 0.40 4.69 7.83 -40.82 -0.32 4.37 16 38 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 39 H 0.10 1.82 8.14 -51.92 -0.42 1.39 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 44 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -35.39 378.65 -8.62 -44.00 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.93 Total: 5.69 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.85 Total: -13.73 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.53 Total: -36.10 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.37 Total: -17.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.39 -8.62 -44.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457344311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.629 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds