Wall clock time and date at job start Tue Mar 31 2020 13:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00368 * 2 1 4 4 C 1.38215 * 120.00106 * 180.20909 * 3 2 1 5 5 C 1.38258 * 119.99945 * 359.85085 * 4 3 2 6 6 C 1.50699 * 120.00032 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47429 * 269.98442 * 6 5 4 8 8 H 1.08996 * 109.46936 * 304.99737 * 7 6 5 9 9 C 1.53007 * 109.47207 * 185.00179 * 7 6 5 10 10 O 1.42898 * 109.46642 * 304.99885 * 9 7 6 11 11 N 1.46498 * 109.47310 * 64.99888 * 7 6 5 12 12 C 1.34774 * 120.00027 * 204.99979 * 11 7 6 13 13 O 1.21280 * 120.00105 * 0.02562 * 12 11 7 14 14 C 1.50708 * 119.99875 * 179.97438 * 12 11 7 15 15 S 1.81002 * 109.46816 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99481 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00652 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99604 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99430 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00086 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47301 * 89.99942 * 20 18 16 22 22 H 1.48504 * 109.47334 * 209.99855 * 20 18 16 23 23 H 1.48499 * 109.47387 * 330.00132 * 20 18 16 24 24 C 1.38212 * 119.99786 * 359.96574 * 5 4 3 25 25 C 1.38218 * 119.99818 * 179.80879 * 2 1 3 26 26 C 1.50703 * 119.99968 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47734 * 270.19185 * 1 2 3 28 28 H 1.09002 * 109.46829 * 30.19130 * 1 2 3 29 29 H 1.09000 * 109.47496 * 150.18444 * 1 2 3 30 30 H 1.08000 * 120.00288 * 0.04136 * 3 2 1 31 31 H 1.08003 * 119.99976 * 179.83615 * 4 3 2 32 32 H 1.09004 * 109.47169 * 29.98781 * 6 5 4 33 33 H 1.09004 * 109.46787 * 149.98135 * 6 5 4 34 34 H 1.08996 * 109.47148 * 64.99353 * 9 7 6 35 35 H 1.08995 * 109.46927 * 185.00017 * 9 7 6 36 36 H 0.96704 * 113.99536 * 180.02562 * 10 9 7 37 37 H 0.97000 * 119.99383 * 25.00309 * 11 7 6 38 38 H 1.08998 * 109.47078 * 299.99964 * 14 12 11 39 39 H 1.08996 * 109.46766 * 60.00202 * 14 12 11 40 40 H 0.97004 * 119.99060 * 180.02562 * 19 18 16 41 41 H 1.08005 * 119.99681 * 180.02562 * 24 5 4 42 42 H 1.09002 * 109.47152 * 269.72462 * 26 25 2 43 43 H 1.09001 * 109.46980 * 149.72562 * 26 25 2 44 44 H 1.09004 * 109.47113 * 29.72543 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0044 5 6 4.2717 -0.0002 -0.0056 6 6 5.7786 -0.0003 -0.0110 7 6 6.2836 -0.0021 -1.4552 8 1 5.8471 -0.8446 -1.9916 9 6 7.8084 -0.1280 -1.4622 10 8 8.3757 0.9108 -0.6616 11 7 5.8938 1.2488 -2.1105 12 6 5.7623 1.2948 -3.4510 13 8 5.9662 0.3005 -4.1148 14 6 5.3608 2.5816 -4.1250 15 16 5.2696 2.3226 -5.9140 16 6 4.7939 3.9378 -6.4331 17 1 4.6519 4.7201 -5.7021 18 6 4.6028 4.2052 -7.7817 19 7 4.2480 5.4121 -8.1694 20 14 4.8491 2.8526 -9.0461 21 1 3.5662 2.1362 -9.2611 22 1 5.3034 3.4496 -10.3277 23 1 5.8736 1.8963 -8.5549 24 6 3.5805 -1.1971 -0.0018 25 6 2.1980 -1.1970 0.0040 26 6 1.4444 -2.5021 0.0078 27 1 -0.3634 0.0034 1.0276 28 1 -0.3633 0.8883 -0.5168 29 1 -0.3634 -0.8916 -0.5109 30 1 1.6584 2.1326 0.0007 31 1 4.1205 2.1325 -0.0070 32 1 6.1439 0.8903 0.5005 33 1 6.1437 -0.8896 0.5028 34 1 8.0948 -1.0977 -1.0553 35 1 8.1755 -0.0402 -2.4847 36 1 9.3417 0.8929 -0.6208 37 1 5.7304 2.0439 -1.5794 38 1 4.3858 2.8973 -3.7538 39 1 6.0999 3.3523 -3.9063 40 1 4.1141 5.5988 -9.1118 41 1 4.1205 -2.1324 -0.0023 42 1 1.2666 -2.8160 1.0363 43 1 2.0316 -3.2621 -0.5077 44 1 0.4901 -2.3721 -0.5026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457344311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:53 Heat of formation + Delta-G solvation = -106.932289 kcal Electronic energy + Delta-G solvation = -24700.361995 eV Core-core repulsion = 21127.957590 eV Total energy + Delta-G solvation = -3572.404406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14649 -40.31165 -38.22272 -36.19742 -34.68763 -34.46947 -33.17986 -32.16440 -30.17594 -28.66562 -27.89829 -27.84189 -25.57750 -23.02849 -22.84132 -21.46502 -20.95075 -19.86880 -18.50886 -17.74321 -17.48150 -17.09500 -16.74889 -16.63901 -16.48118 -15.91312 -15.61418 -15.36457 -15.11795 -14.95486 -14.85212 -14.54001 -13.99943 -13.82486 -13.73370 -13.63701 -13.57966 -13.35805 -13.19941 -13.02992 -12.86123 -12.69860 -12.56663 -12.47821 -12.10150 -11.87374 -11.75553 -11.63818 -11.18072 -11.08506 -10.83901 -10.55559 -10.12538 -9.59926 -9.26390 -9.00462 -8.52551 -6.23315 0.44376 0.51713 0.97753 1.30464 1.45704 1.55073 1.57567 2.22152 2.26507 2.70917 2.80367 2.85657 3.40129 3.69208 3.84208 3.89516 3.99758 4.06533 4.15118 4.19465 4.25273 4.33350 4.42646 4.44088 4.48058 4.54790 4.66218 4.71493 4.78426 4.82823 4.87372 4.88908 5.00912 5.05635 5.10643 5.29786 5.41859 5.46579 5.58273 5.69765 5.74380 5.79232 6.10199 6.18989 6.47462 6.88808 6.92468 7.19505 8.60121 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.003514 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.720412 B = 7967.022283 C = 9469.850827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.107 4.107 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.092 4.092 6 C -0.068 4.068 7 C 0.153 3.847 8 H 0.084 0.916 9 C 0.069 3.931 10 O -0.577 6.577 11 N -0.698 5.698 12 C 0.538 3.462 13 O -0.563 6.563 14 C -0.112 4.112 15 S -0.170 6.170 16 C -0.531 4.531 17 H 0.060 0.940 18 C 0.046 3.954 19 N -0.917 5.917 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.257 1.257 23 H -0.236 1.236 24 C -0.126 4.126 25 C -0.101 4.101 26 C -0.115 4.115 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.029 0.971 36 H 0.396 0.604 37 H 0.411 0.589 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.277 0.723 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -14.749 23.519 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.107 4.107 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.092 4.092 6 C -0.105 4.105 7 C 0.049 3.951 8 H 0.102 0.898 9 C -0.010 4.010 10 O -0.385 6.385 11 N -0.351 5.351 12 C 0.323 3.677 13 O -0.441 6.441 14 C -0.262 4.262 15 S 0.056 5.944 16 C -0.678 4.678 17 H 0.078 0.922 18 C -0.159 4.159 19 N -0.555 5.555 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.182 1.182 23 H -0.160 1.160 24 C -0.144 4.144 25 C -0.101 4.101 26 C -0.172 4.172 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.245 0.755 37 H 0.247 0.753 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.152 0.848 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.055 -16.116 22.389 27.586 hybrid contribution 0.173 1.653 -0.081 1.664 sum 0.228 -14.463 22.309 26.588 Atomic orbital electron populations 1.20881 0.90180 1.03242 1.02935 1.20085 0.97167 0.92848 1.00640 1.21259 0.94690 0.98096 1.00832 1.21195 0.94336 0.98090 1.00809 1.19959 0.95987 0.93221 1.00062 1.20709 0.90059 1.05608 0.94130 1.21148 0.93181 0.87081 0.93707 0.89821 1.22519 0.92903 0.91550 0.93995 1.86395 1.27023 1.53353 1.71743 1.45737 1.69717 1.14437 1.05196 1.19874 0.76106 0.88705 0.82991 1.90667 1.51454 1.37080 1.64923 1.23258 1.06142 0.99404 0.97442 1.84628 1.90922 1.16601 1.02229 1.22470 1.53352 0.95568 0.96429 0.92177 1.25569 0.92989 0.97724 0.99628 1.70023 1.46028 1.21611 1.17854 0.85864 0.80870 0.80120 0.79492 1.18689 1.18167 1.16038 1.21158 0.93783 0.98192 1.01250 1.20080 0.94102 0.95804 1.00078 1.20887 1.00172 0.93069 1.03042 0.90135 0.91692 0.90561 0.85448 0.85361 0.88975 0.87609 0.90100 0.95222 0.75480 0.75285 0.87504 0.87225 0.91335 0.84809 0.90028 0.91244 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.60 71.23 0.68 -1.19 16 2 C -0.11 -2.26 5.88 -19.87 -0.12 -2.37 16 3 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 4 C -0.13 -2.65 9.10 22.27 0.20 -2.44 16 5 C -0.09 -1.84 4.95 -19.87 -0.10 -1.94 16 6 C -0.07 -1.10 4.61 29.85 0.14 -0.96 16 7 C 0.15 3.29 2.36 44.99 0.11 3.39 16 8 H 0.08 2.13 7.58 -2.39 -0.02 2.11 16 9 C 0.07 1.29 6.85 71.98 0.49 1.79 16 10 O -0.58 -9.54 12.83 -148.98 -1.91 -11.45 16 11 N -0.70 -17.94 4.47 -442.53 -1.98 -19.92 16 12 C 0.54 19.22 7.81 87.66 0.68 19.91 16 13 O -0.56 -24.23 15.52 -3.03 -0.05 -24.27 16 14 C -0.11 -4.41 6.16 71.24 0.44 -3.98 16 15 S -0.17 -8.80 18.55 -56.49 -1.05 -9.85 16 16 C -0.53 -31.50 10.04 67.96 0.68 -30.82 16 17 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 18 C 0.05 2.75 5.50 84.86 0.47 3.22 16 19 N -0.92 -56.48 13.97 21.65 0.30 -56.18 16 20 Si 0.91 45.49 27.74 68.60 1.90 47.39 16 21 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 24 C -0.13 -2.51 9.36 22.27 0.21 -2.30 16 25 C -0.10 -2.03 5.88 -19.87 -0.12 -2.15 16 26 C -0.12 -1.70 9.61 71.24 0.68 -1.02 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 29 H 0.08 1.11 5.94 -2.39 -0.01 1.09 16 30 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.13 2.29 7.57 -2.91 -0.02 2.27 16 32 H 0.09 1.45 7.67 -2.39 -0.02 1.43 16 33 H 0.11 1.30 8.09 -2.38 -0.02 1.28 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.40 3.44 9.12 -74.05 -0.68 2.76 16 37 H 0.41 8.86 7.83 -92.71 -0.73 8.13 16 38 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 39 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 40 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 44 H 0.07 1.02 5.94 -2.38 -0.01 1.01 16 Total: -1.00 -76.49 378.65 1.47 -75.02 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.42 Total: 22.73 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.67 Total: -23.48 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.68 Total: -76.10 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.96 Total: -35.72 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -76.49 1.47 -75.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457344311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.912 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds