Wall clock time and date at job start Tue Mar 31 2020 14:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34023 * 124.50451 * 2 1 4 4 C 1.37200 * 115.15111 * 179.97438 * 3 2 1 5 5 C 1.37177 * 113.24290 * 0.02562 * 4 3 2 6 6 C 1.41233 * 125.48395 * 180.02562 * 5 4 3 7 7 O 1.21447 * 119.99959 * 359.96858 * 6 5 4 8 8 C 1.50702 * 120.00267 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47060 * 179.97438 * 8 6 5 10 10 C 1.50693 * 109.46968 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00393 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99775 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99982 * 180.02562 * 12 10 9 14 14 C 1.52991 * 109.47195 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.46998 * 299.99873 * 14 13 12 16 16 C 1.52995 * 109.47282 * 59.99600 * 14 13 12 17 17 C 1.50702 * 109.47081 * 179.97438 * 14 13 12 18 18 H 1.07990 * 120.00024 * 1.34699 * 17 14 13 19 19 C 1.37883 * 119.99786 * 181.34183 * 17 14 13 20 20 N 1.31510 * 119.99867 * 193.97232 * 19 17 14 21 21 Si 1.86799 * 120.00120 * 13.98041 * 19 17 14 22 22 H 1.48505 * 109.47172 * 84.54522 * 21 19 17 23 23 H 1.48491 * 109.47207 * 204.54450 * 21 19 17 24 24 H 1.48506 * 109.46905 * 324.54772 * 21 19 17 25 25 S 1.70609 * 124.49987 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47238 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47285 * 300.02834 * 1 2 3 28 28 H 1.09000 * 109.47149 * 60.02453 * 1 2 3 29 29 H 1.07999 * 122.41919 * 359.97438 * 3 2 1 30 30 H 1.07996 * 123.37731 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.46846 * 299.99842 * 8 6 5 32 32 H 1.08998 * 109.47066 * 59.99980 * 8 6 5 33 33 H 1.08996 * 109.47319 * 300.00386 * 9 8 6 34 34 H 1.09009 * 109.46718 * 59.99825 * 9 8 6 35 35 H 0.96998 * 120.00166 * 359.97438 * 12 10 9 36 36 H 1.08996 * 109.46714 * 299.99965 * 13 12 10 37 37 H 1.09005 * 109.47080 * 59.99607 * 13 12 10 38 38 H 1.08998 * 109.47039 * 69.36556 * 15 14 13 39 39 H 1.09005 * 109.46923 * 189.36944 * 15 14 13 40 40 H 1.09004 * 109.46840 * 309.36908 * 15 14 13 41 41 H 1.09001 * 109.47347 * 60.00684 * 16 14 13 42 42 H 1.09008 * 109.47438 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.47576 * 299.99846 * 16 14 13 44 44 H 0.97000 * 120.00341 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2662 1.1045 0.0000 4 6 3.6199 0.8815 0.0006 5 6 3.9492 -0.4502 0.0005 6 6 5.2624 -0.9700 0.0014 7 8 6.2141 -0.2155 0.0019 8 6 5.4828 -2.4608 0.0018 9 6 6.9844 -2.7544 0.0022 10 6 7.2047 -4.2451 0.0032 11 8 6.2544 -4.9986 0.0030 12 7 8.4580 -4.7411 0.0043 13 6 8.6722 -6.1903 0.0046 14 6 10.1737 -6.4839 0.0065 15 6 10.8142 -5.8740 -1.2421 16 6 10.8111 -5.8738 1.2564 17 6 10.3941 -7.9747 0.0075 18 1 9.5481 -8.6456 -0.0151 19 6 11.6758 -8.4821 0.0372 20 7 11.8872 -9.7509 -0.2364 21 14 13.1119 -7.3673 0.4663 22 1 13.2520 -7.2865 1.9426 23 1 14.3596 -7.9196 -0.1197 24 1 12.8658 -6.0096 -0.0826 25 16 2.4733 -1.4060 0.0006 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5143 0.8897 28 1 -0.3633 0.5134 -0.8902 29 1 1.8428 2.0980 -0.0004 30 1 4.3527 1.6748 0.0002 31 1 5.0270 -2.8952 0.8915 32 1 5.0282 -2.8954 -0.8885 33 1 7.4398 -2.3199 -0.8876 34 1 7.4393 -2.3195 0.8923 35 1 9.2181 -4.1385 0.0040 36 1 8.2164 -6.6247 0.8943 37 1 8.2177 -6.6251 -0.8856 38 1 10.8021 -4.7870 -1.1625 39 1 11.8440 -6.2207 -1.3284 40 1 10.2526 -6.1800 -2.1248 41 1 10.3550 -6.3083 2.1459 42 1 11.8810 -6.0825 1.2575 43 1 10.6518 -4.7955 1.2561 44 1 12.7889 -10.1079 -0.2159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:14 Heat of formation + Delta-G solvation = -42.777567 kcal Electronic energy + Delta-G solvation = -24047.239517 eV Core-core repulsion = 20477.617068 eV Total energy + Delta-G solvation = -3569.622448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.19710 -39.27919 -37.98016 -36.75511 -33.30848 -33.06920 -32.48444 -31.45802 -28.73678 -26.59021 -26.35477 -25.22252 -24.51788 -23.61001 -21.24719 -19.92900 -19.22462 -19.07212 -17.79419 -16.67532 -16.28265 -16.12773 -16.04236 -15.25804 -15.08992 -14.94405 -14.68966 -14.38979 -14.36933 -13.60574 -13.59226 -13.27124 -12.95514 -12.76425 -12.70673 -12.53823 -12.34833 -12.24881 -12.17512 -12.05337 -12.02247 -11.39540 -11.23320 -11.19011 -10.44014 -10.32689 -10.16966 -10.08357 -10.06473 -9.54935 -9.11256 -9.06653 -8.99904 -8.68492 -8.54260 -8.44163 -6.14849 -4.12051 -0.09083 1.09170 1.49779 1.79483 2.62183 2.95576 3.24396 3.31630 3.38958 3.47492 4.05617 4.26766 4.35602 4.59231 4.67213 4.89675 4.95839 4.97400 5.05399 5.12566 5.15943 5.23045 5.38860 5.51313 5.59159 5.70398 5.77715 5.80819 5.82440 5.94276 6.05360 6.06327 6.36387 6.47886 6.53052 6.62752 6.69565 6.78986 6.96925 7.21949 7.24545 7.42788 7.72053 7.92941 8.44178 8.58867 8.90472 9.49086 10.98160 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.036125 B = 0.002083 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.893923 B =13440.267007 C =13990.804984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.192 4.192 3 C -0.168 4.168 4 C -0.040 4.040 5 C -0.312 4.312 6 C 0.424 3.576 7 O -0.454 6.454 8 C -0.153 4.153 9 C -0.131 4.131 10 C 0.506 3.494 11 O -0.552 6.552 12 N -0.722 5.722 13 C 0.142 3.858 14 C 0.027 3.973 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.512 4.512 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.891 5.891 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.249 1.249 25 S 0.240 5.760 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.847 22.616 0.466 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.313 4.313 3 C -0.198 4.198 4 C -0.073 4.073 5 C -0.430 4.430 6 C 0.303 3.697 7 O -0.332 6.332 8 C -0.191 4.191 9 C -0.171 4.171 10 C 0.291 3.709 11 O -0.430 6.430 12 N -0.373 5.373 13 C 0.019 3.981 14 C 0.026 3.974 15 C -0.200 4.200 16 C -0.205 4.205 17 C -0.550 4.550 18 H 0.094 0.906 19 C -0.128 4.128 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.175 1.175 25 S 0.509 5.491 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.161 0.839 30 H 0.169 0.831 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.219 20.700 0.443 28.940 hybrid contribution 1.511 2.315 0.320 2.783 sum -18.707 23.015 0.762 29.669 Atomic orbital electron populations 1.20434 0.87292 1.03442 1.03508 1.24559 1.01909 0.98559 1.06228 1.19952 0.92784 0.99712 1.07360 1.20973 0.96273 0.95399 0.94704 1.24133 0.99575 0.98230 1.21022 1.20143 0.86267 0.91517 0.71776 1.90594 1.43475 1.61807 1.37308 1.21805 0.97844 0.93286 1.06170 1.21426 0.96530 0.93677 1.05478 1.20501 0.83434 0.90355 0.76576 1.90678 1.41232 1.60640 1.50488 1.46327 1.07220 1.09903 1.73803 1.21508 0.97855 0.77230 1.01494 1.18731 0.89975 0.97188 0.91496 1.22298 1.01579 0.96808 0.99273 1.22359 1.00070 0.97730 1.00300 1.20710 0.93949 0.88314 1.52064 0.90561 1.24983 0.98675 0.94919 0.94232 1.69948 1.21799 1.13927 1.47071 0.87290 0.81212 0.81400 0.78261 1.21376 1.23407 1.17509 1.83325 0.93556 1.06212 1.66031 0.91021 0.90062 0.90060 0.83915 0.83053 0.87529 0.87522 0.88419 0.88446 0.76782 0.91996 0.91891 0.95883 0.92530 0.93414 0.92800 0.94050 0.95124 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.33 36.00 0.37 0.01 16 2 C -0.19 -1.30 6.28 -35.79 -0.22 -1.52 16 3 C -0.17 -1.19 9.99 -41.44 -0.41 -1.60 16 4 C -0.04 -0.35 9.95 -40.34 -0.40 -0.75 16 5 C -0.31 -3.03 6.23 -38.83 -0.24 -3.28 16 6 C 0.42 4.75 6.93 -33.17 -0.23 4.52 16 7 O -0.45 -6.13 16.36 5.41 0.09 -6.05 16 8 C -0.15 -1.68 4.28 -27.88 -0.12 -1.80 16 9 C -0.13 -1.56 4.99 -27.88 -0.14 -1.70 16 10 C 0.51 7.93 7.83 -10.99 -0.09 7.84 16 11 O -0.55 -10.48 15.98 5.56 0.09 -10.39 16 12 N -0.72 -11.71 5.00 -60.30 -0.30 -12.01 16 13 C 0.14 2.82 4.49 -4.04 -0.02 2.80 16 14 C 0.03 0.59 0.50 -155.66 -0.08 0.52 16 15 C -0.14 -2.90 7.53 37.16 0.28 -2.62 16 16 C -0.15 -3.00 7.52 37.16 0.28 -2.72 16 17 C -0.51 -13.75 8.62 -34.44 -0.30 -14.05 16 18 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 2.07 5.32 -17.82 -0.09 1.98 16 20 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 21 Si 0.89 21.17 22.79 -169.99 -3.87 17.29 16 22 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 23 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.25 -5.42 4.65 56.52 0.26 -5.16 16 25 S 0.24 1.86 22.35 -107.50 -2.40 -0.54 16 26 H 0.07 0.25 8.11 -51.93 -0.42 -0.17 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 30 H 0.15 1.23 8.02 -52.49 -0.42 0.81 16 31 H 0.11 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.11 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.10 1.07 8.10 -51.92 -0.42 0.65 16 35 H 0.40 5.65 6.26 -40.82 -0.26 5.40 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.39 7.13 -51.93 -0.37 0.02 16 39 H 0.06 1.23 4.30 -51.93 -0.22 1.01 16 40 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.04 0.89 2.25 -51.92 -0.12 0.77 16 43 H 0.03 0.51 6.86 -51.93 -0.36 0.16 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -32.39 364.61 -8.04 -40.43 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.50 Total: 4.01 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -1.41 Total: -12.38 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.47 Total: -37.88 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.18 Total: -16.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -3.87 Total: 17.29 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.40 Total: -0.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.39 -8.04 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.344 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds