Wall clock time and date at job start Tue Mar 31 2020 14:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46779 * 123.58756 * 3 2 1 5 5 C 1.36895 * 119.99930 * 264.33482 * 4 3 2 6 6 H 1.08006 * 119.99676 * 199.31779 * 5 4 3 7 7 C 1.38996 * 120.00402 * 19.31250 * 5 4 3 8 8 N 1.31399 * 119.99559 * 22.14183 * 7 5 4 9 9 Si 1.86798 * 120.00504 * 202.13753 * 7 5 4 10 10 H 1.48503 * 109.46748 * 60.00140 * 9 7 5 11 11 H 1.48502 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46949 * 300.00293 * 9 7 5 13 13 C 1.34785 * 119.99893 * 84.33765 * 4 3 2 14 14 O 1.21691 * 119.99805 * 179.97438 * 13 4 3 15 15 C 1.46981 * 119.99776 * 359.97438 * 13 4 3 16 16 C 1.46829 * 127.33197 * 89.71417 * 15 13 4 17 17 C 1.50692 * 126.90192 * 359.97438 * 16 15 13 18 18 C 1.34264 * 106.19165 * 179.82831 * 16 15 13 19 19 C 1.50697 * 125.16405 * 180.10765 * 18 16 15 20 20 O 1.34190 * 109.67515 * 0.43748 * 18 16 15 21 21 C 1.34214 * 110.92672 * 359.70866 * 20 18 16 22 22 C 1.47489 * 126.06973 * 179.97438 * 21 20 18 23 23 C 1.39737 * 120.16103 * 179.74965 * 22 21 20 24 24 C 1.37925 * 119.83567 * 179.69952 * 23 22 21 25 25 C 1.38390 * 120.15856 * 0.60041 * 24 23 22 26 26 C 1.38386 * 120.32467 * 359.67566 * 25 24 23 27 27 C 1.37916 * 120.16063 * 0.02562 * 26 25 24 28 28 H 4.40640 * 5.51500 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47330 * 3.58914 * 3 2 1 30 30 H 1.09000 * 109.46871 * 243.58325 * 3 2 1 31 31 H 0.97003 * 120.00155 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47108 * 90.00789 * 17 16 15 33 33 H 1.08999 * 109.47361 * 210.00382 * 17 16 15 34 34 H 1.09005 * 109.47461 * 330.00788 * 17 16 15 35 35 H 1.09001 * 109.47468 * 180.35218 * 19 18 16 36 36 H 1.09003 * 109.46928 * 300.35655 * 19 18 16 37 37 H 1.09004 * 109.47028 * 60.35258 * 19 18 16 38 38 H 1.07997 * 120.08409 * 0.02562 * 23 22 21 39 39 H 1.07997 * 119.91860 * 180.29769 * 24 23 22 40 40 H 1.07996 * 119.83632 * 179.69505 * 25 24 23 41 41 H 1.08002 * 119.91792 * 180.02562 * 26 25 24 42 42 H 1.08003 * 120.08236 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7650 -1.1507 5 6 3.4727 0.1178 -2.3084 6 1 4.1100 0.6040 -3.0322 7 6 2.9966 -1.1651 -2.5524 8 7 1.9164 -1.5927 -1.9385 9 14 3.8922 -2.2812 -3.7530 10 1 5.2840 -2.4984 -3.2829 11 1 3.1878 -3.5859 -3.8358 12 1 3.9165 -1.6462 -5.0952 13 6 3.2493 2.1054 -1.0693 14 8 3.6551 2.7403 -2.0250 15 6 2.8851 2.8003 0.1736 16 6 3.7583 3.0984 1.3158 17 6 5.2184 2.7517 1.4532 18 6 2.9953 3.7447 2.2117 19 6 3.4689 4.2528 3.5491 20 8 1.7452 3.8633 1.7386 21 6 1.6392 3.3100 0.5204 22 6 0.4174 3.2522 -0.3038 23 6 0.4480 2.6475 -1.5631 24 6 -0.6999 2.5918 -2.3256 25 6 -1.8770 3.1438 -1.8515 26 6 -1.9135 3.7493 -0.6077 27 6 -0.7749 3.8071 0.1685 28 1 -1.0502 0.0000 0.0003 29 1 3.0098 -1.0248 -0.0643 30 1 3.0091 0.4580 0.9204 31 1 1.5843 -2.4882 -2.1084 32 1 5.8242 3.5671 1.0579 33 1 5.4579 2.5983 2.5054 34 1 5.4292 1.8391 0.8957 35 1 2.6396 4.7309 4.0706 36 1 3.8397 3.4182 4.1442 37 1 4.2699 4.9768 3.3998 38 1 1.3670 2.2202 -1.9363 39 1 -0.6789 2.1205 -3.2971 40 1 -2.7717 3.1016 -2.4550 41 1 -2.8358 4.1777 -0.2439 42 1 -0.8049 4.2797 1.1392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490971351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:34 Heat of formation + Delta-G solvation = 75.155332 kcal Electronic energy + Delta-G solvation = -28011.786380 eV Core-core repulsion = 24311.833935 eV Total energy + Delta-G solvation = -3699.952445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04180 -38.79482 -38.22498 -35.11141 -33.89853 -32.62851 -31.82936 -31.18739 -30.53448 -30.14985 -28.14026 -26.43584 -25.36062 -25.10822 -22.73624 -22.15340 -21.31299 -19.17710 -18.66034 -17.81403 -17.07124 -16.47861 -16.17107 -15.79531 -15.55241 -14.91649 -14.60845 -14.26936 -14.02368 -13.88948 -13.35067 -13.24632 -13.12551 -13.00924 -12.68121 -12.47489 -12.44542 -12.36279 -12.14660 -12.08905 -12.02616 -11.63144 -11.23073 -11.02650 -10.89564 -10.58321 -10.44575 -10.30285 -9.52167 -9.27893 -9.12490 -8.88744 -8.77409 -8.51916 -8.45415 -7.89575 -7.34533 -6.37301 -3.91127 1.12642 1.82981 2.37188 2.84208 3.07715 3.13579 3.22901 3.26485 3.61419 3.90548 4.14232 4.22040 4.29024 4.69110 4.94891 4.99398 5.14963 5.21901 5.28502 5.31977 5.40008 5.47000 5.49371 5.57663 5.73922 5.74530 5.79636 5.92552 5.94387 6.09420 6.15319 6.23255 6.26301 6.37054 6.42098 6.53948 6.72006 6.78707 6.86164 6.91507 6.99444 7.10226 7.34846 7.51435 7.55716 8.01204 8.38201 8.93408 9.06604 9.29411 9.87043 10.61810 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.006542 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.815290 B = 4279.074617 C = 5893.709979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.112 4.112 3 C 0.235 3.765 4 N -0.424 5.424 5 C -0.323 4.323 6 H 0.105 0.895 7 C 0.038 3.962 8 N -0.849 5.849 9 Si 0.920 3.080 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.514 3.486 14 O -0.577 6.577 15 C -0.166 4.166 16 C -0.153 4.153 17 C -0.080 4.080 18 C -0.022 4.022 19 C -0.066 4.066 20 O -0.173 6.173 21 C 0.061 3.939 22 C -0.013 4.013 23 C -0.067 4.067 24 C -0.112 4.112 25 C -0.116 4.116 26 C -0.131 4.131 27 C -0.106 4.106 28 H 0.194 0.806 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.270 0.730 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 6.090 9.386 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.114 4.114 3 C 0.112 3.888 4 N -0.141 5.141 5 C -0.450 4.450 6 H 0.122 0.878 7 C -0.169 4.169 8 N -0.486 5.486 9 Si 0.746 3.254 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.303 3.697 14 O -0.462 6.462 15 C -0.171 4.171 16 C -0.155 4.155 17 C -0.137 4.137 18 C -0.071 4.071 19 C -0.123 4.123 20 O -0.071 6.071 21 C 0.011 3.989 22 C -0.013 4.013 23 C -0.085 4.085 24 C -0.130 4.130 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.124 4.124 28 H 0.211 0.789 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.165 0.835 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.999 6.316 9.058 11.443 hybrid contribution 0.026 -0.870 -0.649 1.086 sum -2.973 5.447 8.408 10.450 Atomic orbital electron populations 1.24054 0.95079 1.03939 1.03624 1.22868 0.94016 0.97348 0.97123 1.18158 0.84739 0.98265 0.87617 1.43646 1.54916 1.03496 1.12078 1.19589 1.29194 0.97768 0.98483 0.87754 1.25311 0.94864 0.98419 0.98257 1.70107 1.17413 1.18724 1.42325 0.86107 0.79638 0.78952 0.80714 1.19835 1.21022 1.19778 1.16897 0.84762 0.82071 0.85997 1.90680 1.51368 1.65573 1.38550 1.21830 0.92509 1.05668 0.97064 1.21077 0.97228 1.03829 0.93357 1.20150 0.89710 1.02241 1.01606 1.21849 0.82050 1.05115 0.98071 1.20239 1.01241 1.01428 0.89349 1.83633 1.30661 1.63728 1.29087 1.20623 0.93881 1.00281 0.84146 1.17642 0.89243 1.01171 0.93253 1.21677 1.00340 0.94578 0.91891 1.21027 0.92304 0.99438 1.00196 1.21200 0.97832 0.98335 0.96050 1.20883 0.97738 1.01279 0.95007 1.21131 0.92051 0.99500 0.99678 0.78919 0.87795 0.92148 0.91954 0.91358 0.91710 0.91085 0.90865 0.89911 0.89992 0.83517 0.85788 0.86368 0.86260 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.28 17.65 29.55 0.52 -4.76 16 2 C -0.11 -2.55 10.09 -37.12 -0.37 -2.92 16 3 C 0.24 5.37 4.91 -6.83 -0.03 5.34 16 4 N -0.42 -10.65 2.31 -119.31 -0.28 -10.93 16 5 C -0.32 -8.64 9.28 -15.01 -0.14 -8.78 16 6 H 0.10 2.94 7.41 -52.48 -0.39 2.55 16 7 C 0.04 0.95 4.83 -17.46 -0.08 0.86 16 8 N -0.85 -21.57 9.57 55.50 0.53 -21.04 16 9 Si 0.92 19.91 29.61 -169.99 -5.03 14.88 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 13 C 0.51 12.96 4.45 -12.71 -0.06 12.90 16 14 O -0.58 -16.49 16.47 5.20 0.09 -16.41 16 15 C -0.17 -3.64 4.26 -102.60 -0.44 -4.08 16 16 C -0.15 -2.77 6.13 -102.55 -0.63 -3.40 16 17 C -0.08 -1.21 10.13 36.00 0.36 -0.84 16 18 C -0.02 -0.35 7.25 -35.71 -0.26 -0.61 16 19 C -0.07 -0.69 9.90 36.00 0.36 -0.33 16 20 O -0.17 -3.16 10.29 6.25 0.06 -3.09 16 21 C 0.06 1.26 7.02 -35.53 -0.25 1.01 16 22 C -0.01 -0.26 5.30 -105.01 -0.56 -0.81 16 23 C -0.07 -1.43 7.28 -39.14 -0.28 -1.72 16 24 C -0.11 -2.05 10.03 -39.64 -0.40 -2.45 16 25 C -0.12 -1.76 10.04 -39.47 -0.40 -2.15 16 26 C -0.13 -1.90 10.03 -39.64 -0.40 -2.30 16 27 C -0.11 -1.75 9.73 -39.14 -0.38 -2.13 16 28 H 0.19 3.57 7.80 -54.08 -0.42 3.15 16 29 H 0.10 2.44 6.61 -51.93 -0.34 2.09 16 30 H 0.06 1.27 6.92 -51.93 -0.36 0.91 16 31 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.75 7.88 -51.93 -0.41 0.34 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.15 3.72 4.38 -52.49 -0.23 3.49 16 39 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.78 7.92 -52.48 -0.42 1.36 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -31.35 360.00 -7.72 -39.07 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.09 Total: 9.26 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.43 Total: -17.17 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.26 Total: -31.97 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.15 Total: -19.50 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.35 -7.72 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.227 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds