Wall clock time and date at job start Tue Mar 31 2020 14:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46779 * 123.58756 * 3 2 1 5 5 C 1.36895 * 119.99930 * 264.33482 * 4 3 2 6 6 H 1.08006 * 119.99676 * 199.31779 * 5 4 3 7 7 C 1.38996 * 120.00402 * 19.31250 * 5 4 3 8 8 N 1.31399 * 119.99559 * 22.14183 * 7 5 4 9 9 Si 1.86798 * 120.00504 * 202.13753 * 7 5 4 10 10 H 1.48503 * 109.46748 * 60.00140 * 9 7 5 11 11 H 1.48502 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46949 * 300.00293 * 9 7 5 13 13 C 1.34785 * 119.99893 * 84.33765 * 4 3 2 14 14 O 1.21691 * 119.99805 * 179.97438 * 13 4 3 15 15 C 1.46981 * 119.99776 * 359.97438 * 13 4 3 16 16 C 1.46829 * 127.33197 * 89.71417 * 15 13 4 17 17 C 1.50692 * 126.90192 * 359.97438 * 16 15 13 18 18 C 1.34264 * 106.19165 * 179.82831 * 16 15 13 19 19 C 1.50697 * 125.16405 * 180.10765 * 18 16 15 20 20 O 1.34190 * 109.67515 * 0.43748 * 18 16 15 21 21 C 1.34214 * 110.92672 * 359.70866 * 20 18 16 22 22 C 1.47489 * 126.06973 * 179.97438 * 21 20 18 23 23 C 1.39737 * 120.16103 * 179.74965 * 22 21 20 24 24 C 1.37925 * 119.83567 * 179.69952 * 23 22 21 25 25 C 1.38390 * 120.15856 * 0.60041 * 24 23 22 26 26 C 1.38386 * 120.32467 * 359.67566 * 25 24 23 27 27 C 1.37916 * 120.16063 * 0.02562 * 26 25 24 28 28 H 4.40640 * 5.51500 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47330 * 3.58914 * 3 2 1 30 30 H 1.09000 * 109.46871 * 243.58325 * 3 2 1 31 31 H 0.97003 * 120.00155 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47108 * 90.00789 * 17 16 15 33 33 H 1.08999 * 109.47361 * 210.00382 * 17 16 15 34 34 H 1.09005 * 109.47461 * 330.00788 * 17 16 15 35 35 H 1.09001 * 109.47468 * 180.35218 * 19 18 16 36 36 H 1.09003 * 109.46928 * 300.35655 * 19 18 16 37 37 H 1.09004 * 109.47028 * 60.35258 * 19 18 16 38 38 H 1.07997 * 120.08409 * 0.02562 * 23 22 21 39 39 H 1.07997 * 119.91860 * 180.29769 * 24 23 22 40 40 H 1.07996 * 119.83632 * 179.69505 * 25 24 23 41 41 H 1.08002 * 119.91792 * 180.02562 * 26 25 24 42 42 H 1.08003 * 120.08236 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7650 -1.1507 5 6 3.4727 0.1178 -2.3084 6 1 4.1100 0.6040 -3.0322 7 6 2.9966 -1.1651 -2.5524 8 7 1.9164 -1.5927 -1.9385 9 14 3.8922 -2.2812 -3.7530 10 1 5.2840 -2.4984 -3.2829 11 1 3.1878 -3.5859 -3.8358 12 1 3.9165 -1.6462 -5.0952 13 6 3.2493 2.1054 -1.0693 14 8 3.6551 2.7403 -2.0250 15 6 2.8851 2.8003 0.1736 16 6 3.7583 3.0984 1.3158 17 6 5.2184 2.7517 1.4532 18 6 2.9953 3.7447 2.2117 19 6 3.4689 4.2528 3.5491 20 8 1.7452 3.8633 1.7386 21 6 1.6392 3.3100 0.5204 22 6 0.4174 3.2522 -0.3038 23 6 0.4480 2.6475 -1.5631 24 6 -0.6999 2.5918 -2.3256 25 6 -1.8770 3.1438 -1.8515 26 6 -1.9135 3.7493 -0.6077 27 6 -0.7749 3.8071 0.1685 28 1 -1.0502 0.0000 0.0003 29 1 3.0098 -1.0248 -0.0643 30 1 3.0091 0.4580 0.9204 31 1 1.5843 -2.4882 -2.1084 32 1 5.8242 3.5671 1.0579 33 1 5.4579 2.5983 2.5054 34 1 5.4292 1.8391 0.8957 35 1 2.6396 4.7309 4.0706 36 1 3.8397 3.4182 4.1442 37 1 4.2699 4.9768 3.3998 38 1 1.3670 2.2202 -1.9363 39 1 -0.6789 2.1205 -3.2971 40 1 -2.7717 3.1016 -2.4550 41 1 -2.8358 4.1777 -0.2439 42 1 -0.8049 4.2797 1.1392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490971351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:33 Heat of formation + Delta-G solvation = 58.666543 kcal Electronic energy + Delta-G solvation = -28012.501388 eV Core-core repulsion = 24311.833935 eV Total energy + Delta-G solvation = -3700.667453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.45312 -40.51874 -39.72991 -37.08491 -35.22504 -34.23618 -33.50442 -33.03448 -31.87340 -31.32605 -29.43642 -28.29615 -26.99638 -26.56359 -24.35569 -23.48294 -22.74611 -20.69595 -20.19986 -19.67787 -18.60173 -18.28963 -17.75244 -17.20209 -16.99686 -16.63237 -16.21609 -15.97282 -15.56257 -15.43655 -14.75058 -14.59449 -14.34756 -14.22960 -14.18514 -14.04297 -13.84732 -13.77846 -13.58538 -13.52670 -13.48132 -13.04144 -12.83185 -12.54703 -12.48988 -12.20685 -12.17388 -11.78799 -11.23741 -11.15483 -10.74259 -10.61933 -10.54331 -10.05763 -9.88032 -9.83758 -8.73260 -8.34873 -5.97591 -0.26661 0.48466 1.06564 1.32865 1.37038 1.41936 1.51296 1.72133 1.78425 2.13109 2.32762 2.45403 2.92624 2.98828 3.16310 3.47367 3.82543 3.89734 3.96298 4.01228 4.06214 4.18243 4.27361 4.38535 4.50036 4.55185 4.57870 4.70618 4.75544 4.81913 4.82363 4.87698 4.91983 4.96434 5.06480 5.12587 5.16984 5.39561 5.43154 5.48691 5.53070 5.60266 5.63629 6.00485 6.02966 6.15208 6.39523 7.06564 7.19749 7.32607 7.92120 8.62359 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.006542 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.815290 B = 4279.074617 C = 5893.709979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.143 4.143 3 C 0.243 3.757 4 N -0.427 5.427 5 C -0.360 4.360 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.858 5.858 9 Si 0.983 3.017 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.279 1.279 13 C 0.517 3.483 14 O -0.632 6.632 15 C -0.206 4.206 16 C -0.180 4.180 17 C -0.076 4.076 18 C -0.003 4.003 19 C -0.065 4.065 20 O -0.170 6.170 21 C 0.053 3.947 22 C -0.035 4.035 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.101 4.101 26 C -0.114 4.114 27 C -0.103 4.103 28 H 0.221 0.779 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.274 0.726 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 6.678 11.972 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.144 4.144 3 C 0.121 3.879 4 N -0.143 5.143 5 C -0.487 4.487 6 H 0.092 0.908 7 C -0.193 4.193 8 N -0.493 5.493 9 Si 0.807 3.193 10 H -0.192 1.192 11 H -0.195 1.195 12 H -0.205 1.205 13 C 0.308 3.692 14 O -0.521 6.521 15 C -0.210 4.210 16 C -0.182 4.182 17 C -0.132 4.132 18 C -0.052 4.052 19 C -0.121 4.121 20 O -0.068 6.068 21 C 0.002 3.998 22 C -0.036 4.036 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.118 4.118 26 C -0.132 4.132 27 C -0.121 4.121 28 H 0.238 0.762 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.175 0.825 41 H 0.185 0.815 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.302 6.881 11.681 14.557 hybrid contribution 0.636 -0.992 -1.440 1.861 sum -4.667 5.889 10.241 12.702 Atomic orbital electron populations 1.24655 0.95715 1.02475 1.02135 1.22945 0.94336 0.98680 0.98477 1.18064 0.85410 0.97177 0.87263 1.43703 1.54576 1.03832 1.12147 1.19480 1.30647 0.99105 0.99485 0.90763 1.25981 0.95088 0.98572 0.99685 1.70189 1.17516 1.18899 1.42659 0.85167 0.78817 0.77248 0.78107 1.19154 1.19487 1.20466 1.17309 0.83271 0.81958 0.86659 1.90599 1.53895 1.66668 1.40907 1.21736 0.94741 1.07438 0.97122 1.21418 0.98553 1.05486 0.92770 1.20190 0.88151 1.00997 1.03873 1.22886 0.80579 1.02524 0.99162 1.20570 1.02477 1.02851 0.86180 1.83654 1.31871 1.63259 1.28001 1.20778 0.93833 1.00179 0.84969 1.17766 0.90459 1.02483 0.92849 1.21385 0.99568 0.97107 0.93711 1.21115 0.93019 1.00637 0.99976 1.21587 0.97471 0.96188 0.96598 1.21409 0.98601 0.99278 0.93893 1.21454 0.91301 0.98548 1.00756 0.76190 0.89066 0.90933 0.91565 0.91014 0.87521 0.93768 0.89026 0.87448 0.87798 0.88460 0.86524 0.82454 0.81509 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.82 17.65 74.32 1.31 -8.51 16 2 C -0.14 -6.68 10.09 31.13 0.31 -6.37 16 3 C 0.24 11.74 4.91 84.57 0.42 12.15 16 4 N -0.43 -23.14 2.31 -649.61 -1.50 -24.64 16 5 C -0.36 -20.79 9.28 84.08 0.78 -20.01 16 6 H 0.07 4.62 7.41 -2.91 -0.02 4.60 16 7 C 0.01 0.64 4.83 84.94 0.41 1.05 16 8 N -0.86 -44.74 9.57 21.67 0.21 -44.53 16 9 Si 0.98 42.18 29.61 68.60 2.03 44.21 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 13 C 0.52 28.37 4.45 86.53 0.39 28.76 16 14 O -0.63 -39.86 16.47 -4.32 -0.07 -39.93 16 15 C -0.21 -9.51 4.26 -18.55 -0.08 -9.59 16 16 C -0.18 -6.61 6.13 -18.53 -0.11 -6.72 16 17 C -0.08 -2.28 10.13 71.23 0.72 -1.56 16 18 C 0.00 -0.08 7.25 24.78 0.18 0.10 16 19 C -0.06 -1.08 9.90 71.24 0.70 -0.38 16 20 O -0.17 -6.02 10.29 -0.54 -0.01 -6.03 16 21 C 0.05 2.24 7.02 24.90 0.17 2.42 16 22 C -0.04 -1.42 5.30 -20.11 -0.11 -1.53 16 23 C -0.10 -4.46 7.28 22.56 0.16 -4.30 16 24 C -0.13 -4.82 10.03 22.23 0.22 -4.60 16 25 C -0.10 -2.75 10.04 22.34 0.22 -2.52 16 26 C -0.11 -2.83 10.03 22.23 0.22 -2.61 16 27 C -0.10 -3.15 9.73 22.56 0.22 -2.94 16 28 H 0.22 7.75 7.80 -4.41 -0.03 7.72 16 29 H 0.09 4.52 6.61 -2.39 -0.02 4.50 16 30 H 0.07 3.22 6.92 -2.39 -0.02 3.21 16 31 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.11 2.23 7.88 -2.39 -0.02 2.21 16 34 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 5.39 4.38 -2.91 -0.01 5.38 16 39 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.14 3.70 7.92 -2.91 -0.02 3.67 16 Total: -1.00 -76.60 360.00 7.85 -68.75 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 1.04 Total: 29.32 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 6.15 Total: -27.15 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.29 Total: -69.17 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.08 Total: -45.95 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -76.60 7.85 -68.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.412 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds