Wall clock time and date at job start Tue Mar 31 2020 13:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38419 * 119.91654 * 2 1 4 4 C 1.38379 * 120.34933 * 179.97438 * 3 2 1 5 5 C 1.37916 * 120.16974 * 359.97438 * 4 3 2 6 6 C 1.39827 * 119.82156 * 359.76691 * 5 4 3 7 7 C 1.47198 * 120.16542 * 180.27617 * 6 5 4 8 8 C 1.34827 * 120.00342 * 38.29870 * 7 6 5 9 9 C 1.46386 * 120.00087 * 15.17133 * 8 7 6 10 10 O 1.21708 * 119.99645 * 6.69044 * 9 8 7 11 11 N 1.34775 * 120.00213 * 186.68855 * 9 8 7 12 12 C 1.39820 * 119.99673 * 175.48411 * 11 9 8 13 13 C 1.38988 * 120.03472 * 215.02794 * 12 11 9 14 14 C 1.38151 * 120.06452 * 179.70161 * 13 12 11 15 15 C 1.38179 * 120.13672 * 0.59752 * 14 13 12 16 16 C 1.38916 * 120.07863 * 359.68044 * 15 14 13 17 17 O 1.35746 * 120.03426 * 179.97438 * 16 15 14 18 18 C 1.34832 * 117.00514 * 186.30663 * 17 16 15 19 19 H 1.08007 * 119.99073 * 5.69441 * 18 17 16 20 20 C 1.38648 * 120.00440 * 185.69403 * 18 17 16 21 21 N 1.31562 * 119.99633 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99899 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47292 * 60.00410 * 22 20 18 24 24 H 1.48505 * 109.47040 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47417 * 299.99818 * 22 20 18 26 26 C 1.38741 * 120.04108 * 35.30625 * 12 11 9 27 27 C 1.37870 * 119.91378 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46843 * 270.02248 * 1 2 3 29 29 H 1.09006 * 109.46732 * 30.02278 * 1 2 3 30 30 H 1.09001 * 109.47231 * 150.02189 * 1 2 3 31 31 H 1.08002 * 119.82954 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.91972 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.08706 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.99547 * 218.29396 * 7 6 5 35 35 H 1.08002 * 120.00473 * 195.16571 * 8 7 6 36 36 H 0.96998 * 120.00007 * 355.48480 * 11 9 8 37 37 H 1.08007 * 119.97046 * 359.97438 * 13 12 11 38 38 H 1.07999 * 119.93354 * 180.27703 * 14 13 12 39 39 H 1.07999 * 119.95718 * 179.69944 * 15 14 13 40 40 H 0.97004 * 119.99555 * 179.97438 * 21 20 18 41 41 H 1.07997 * 120.06844 * 359.97438 * 26 12 11 42 42 H 1.08006 * 120.08774 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5812 1.2102 0.0005 5 6 4.2833 0.0231 0.0016 6 6 3.5931 -1.1929 0.0071 7 6 4.3349 -2.4643 0.0144 8 6 5.4653 -2.5812 0.7399 9 6 5.7815 -1.5879 1.7675 10 8 4.9695 -0.7270 2.0519 11 7 6.9717 -1.6266 2.3988 12 6 7.3117 -0.6237 3.3116 13 6 8.6302 -0.1965 3.4166 14 6 8.9658 0.7988 4.3140 15 6 7.9948 1.3639 5.1185 16 6 6.6763 0.9373 5.0225 17 8 5.7232 1.4927 5.8136 18 6 4.4919 0.9455 5.7649 19 1 4.3222 0.0483 5.1879 20 6 3.4436 1.5345 6.4552 21 7 3.6505 2.6270 7.1583 22 14 1.7379 0.7758 6.3882 23 1 1.7898 -0.6072 6.9264 24 1 0.8019 1.5895 7.2049 25 1 1.2662 0.7419 4.9805 26 6 6.3346 -0.0578 4.1178 27 6 2.1946 -1.1950 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6533 2.1327 -0.0004 32 1 4.1128 2.1503 0.0009 33 1 5.3632 0.0329 0.0024 34 1 3.9735 -3.3036 -0.5613 35 1 6.1375 -3.4078 0.5629 36 1 7.5922 -2.3503 2.2198 37 1 9.3923 -0.6399 2.7929 38 1 9.9902 1.1323 4.3906 39 1 8.2613 2.1384 5.8224 40 1 2.9170 3.0393 7.6410 41 1 5.3101 -0.3909 4.0411 42 1 1.6546 -2.1304 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491091342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:06 Heat of formation + Delta-G solvation = 20.561903 kcal Electronic energy + Delta-G solvation = -26577.502974 eV Core-core repulsion = 22875.183180 eV Total energy + Delta-G solvation = -3702.319794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34376 -39.11496 -38.31278 -36.51314 -34.36515 -33.84166 -32.17933 -32.09186 -30.14777 -29.03180 -28.52650 -26.68711 -25.31489 -24.24997 -22.22209 -21.89846 -21.33955 -20.57908 -19.15612 -18.00310 -17.26480 -17.10413 -16.23256 -15.64087 -15.21959 -15.01966 -14.67619 -14.66608 -14.16163 -14.08143 -13.73434 -13.59115 -13.53368 -13.42487 -12.90606 -12.84700 -12.50659 -12.35660 -12.18579 -11.91171 -11.63546 -11.48066 -11.04470 -10.95109 -10.93145 -10.87313 -10.74729 -10.39002 -9.88076 -9.76257 -9.65964 -9.12872 -8.72043 -8.49910 -7.87184 -7.58527 -7.15105 -6.35791 -3.92972 0.69640 1.68700 1.96814 2.24360 2.38542 3.20132 3.22447 3.26377 3.42955 3.49492 4.04620 4.07086 4.62245 4.67625 4.83360 5.00204 5.08713 5.20097 5.22036 5.28662 5.33815 5.44747 5.57001 5.66286 5.66661 5.76750 5.88459 5.92758 6.02146 6.04186 6.13454 6.24449 6.33168 6.36493 6.39936 6.66481 6.68302 6.76928 6.81730 7.01727 7.12243 7.22840 7.26348 7.28921 7.53050 7.81241 7.89512 8.11104 8.49093 9.11019 9.78931 10.82167 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008407 B = 0.005772 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.583162 B = 4849.652304 C = 7245.412834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.102 4.102 4 C -0.124 4.124 5 C -0.037 4.037 6 C -0.079 4.079 7 C -0.016 4.016 8 C -0.218 4.218 9 C 0.527 3.473 10 O -0.492 6.492 11 N -0.667 5.667 12 C 0.178 3.822 13 C -0.238 4.238 14 C -0.062 4.062 15 C -0.206 4.206 16 C 0.163 3.837 17 O -0.174 6.174 18 C -0.382 4.382 19 H 0.091 0.909 20 C 0.041 3.959 21 N -0.865 5.865 22 Si 0.936 3.064 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.226 4.226 27 C -0.098 4.098 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.403 0.597 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.269 0.731 41 H 0.147 0.853 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -10.077 -16.212 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.120 4.120 4 C -0.143 4.143 5 C -0.055 4.055 6 C -0.079 4.079 7 C -0.035 4.035 8 C -0.238 4.238 9 C 0.317 3.683 10 O -0.367 6.367 11 N -0.312 5.312 12 C 0.084 3.916 13 C -0.260 4.260 14 C -0.081 4.081 15 C -0.226 4.226 16 C 0.109 3.891 17 O -0.077 6.077 18 C -0.458 4.458 19 H 0.109 0.891 20 C -0.163 4.163 21 N -0.501 5.501 22 Si 0.760 3.240 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.248 4.248 27 C -0.116 4.116 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.238 0.762 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.164 0.836 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.381 -9.121 -15.722 18.180 hybrid contribution -0.355 -0.849 -0.015 0.921 sum 0.026 -9.971 -15.737 18.630 Atomic orbital electron populations 1.20744 0.91504 1.02173 1.02279 1.19686 0.95785 0.93155 1.01889 1.21075 0.94310 0.97294 0.99357 1.20958 0.94165 0.98044 1.01096 1.21053 0.98980 0.91492 0.94013 1.18806 0.93156 0.92699 1.03209 1.22377 0.91877 0.95155 0.94127 1.22904 0.99775 1.01772 0.99392 1.18575 0.81803 0.85252 0.82713 1.91004 1.45918 1.35830 1.63977 1.43408 1.18812 1.26704 1.42227 1.17421 0.93444 0.90683 0.90009 1.20271 0.94354 1.04718 1.06607 1.20386 0.97782 0.95167 0.94775 1.20219 0.90780 1.05997 1.05558 1.19240 0.89727 0.91237 0.88935 1.83995 1.18256 1.51714 1.53771 1.21279 0.82968 1.09675 1.31920 0.89141 1.25224 0.99185 0.95912 0.95984 1.70037 1.32770 1.18338 1.28905 0.85848 0.80471 0.78755 0.78880 1.19600 1.20317 1.19279 1.21272 1.01065 1.03223 0.99190 1.20990 0.92822 0.97368 1.00383 0.91331 0.91823 0.91944 0.86468 0.86248 0.87009 0.84759 0.84941 0.76206 0.87505 0.86724 0.86540 0.92121 0.83578 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.01 0.36 -0.87 16 2 C -0.11 -1.49 5.87 -104.69 -0.61 -2.10 16 3 C -0.10 -1.54 9.69 -39.46 -0.38 -1.92 16 4 C -0.12 -2.00 10.03 -39.65 -0.40 -2.40 16 5 C -0.04 -0.59 6.64 -39.11 -0.26 -0.85 16 6 C -0.08 -1.14 4.65 -105.06 -0.49 -1.62 16 7 C -0.02 -0.18 9.82 -37.15 -0.36 -0.54 16 8 C -0.22 -2.48 9.85 -37.52 -0.37 -2.85 16 9 C 0.53 8.47 6.44 -12.98 -0.08 8.38 16 10 O -0.49 -10.13 9.71 5.18 0.05 -10.08 16 11 N -0.67 -10.08 5.33 -11.15 -0.06 -10.14 16 12 C 0.18 3.41 6.29 -83.75 -0.53 2.89 16 13 C -0.24 -4.12 9.96 -39.34 -0.39 -4.52 16 14 C -0.06 -1.12 10.03 -39.64 -0.40 -1.52 16 15 C -0.21 -4.49 9.99 -39.35 -0.39 -4.88 16 16 C 0.16 4.17 6.64 -39.14 -0.26 3.91 16 17 O -0.17 -5.22 9.76 0.06 0.00 -5.22 16 18 C -0.38 -11.41 9.43 30.88 0.29 -11.11 16 19 H 0.09 2.63 5.31 -52.48 -0.28 2.35 16 20 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 21 N -0.87 -26.38 13.67 55.48 0.76 -25.62 16 22 Si 0.94 22.16 29.55 -169.99 -5.02 17.13 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.23 -5.37 7.77 -39.20 -0.30 -5.67 16 27 C -0.10 -1.35 9.44 -39.11 -0.37 -1.72 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.11 1.79 6.72 -52.49 -0.35 1.44 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.40 4.36 8.80 -40.82 -0.36 4.00 16 37 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.15 3.79 3.90 -52.49 -0.20 3.59 16 42 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -35.39 359.21 -8.88 -44.27 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.98 Total: 10.56 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -5.05 Total: -26.32 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.70 Total: -35.76 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.05 Total: -15.30 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.39 -8.88 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491091342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.832 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds