Wall clock time and date at job start Tue Mar 31 2020 13:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38419 * 119.91654 * 2 1 4 4 C 1.38379 * 120.34933 * 179.97438 * 3 2 1 5 5 C 1.37916 * 120.16974 * 359.97438 * 4 3 2 6 6 C 1.39827 * 119.82156 * 359.76691 * 5 4 3 7 7 C 1.47198 * 120.16542 * 180.27617 * 6 5 4 8 8 C 1.34827 * 120.00342 * 38.29870 * 7 6 5 9 9 C 1.46386 * 120.00087 * 15.17133 * 8 7 6 10 10 O 1.21708 * 119.99645 * 6.69044 * 9 8 7 11 11 N 1.34775 * 120.00213 * 186.68855 * 9 8 7 12 12 C 1.39820 * 119.99673 * 175.48411 * 11 9 8 13 13 C 1.38988 * 120.03472 * 215.02794 * 12 11 9 14 14 C 1.38151 * 120.06452 * 179.70161 * 13 12 11 15 15 C 1.38179 * 120.13672 * 0.59752 * 14 13 12 16 16 C 1.38916 * 120.07863 * 359.68044 * 15 14 13 17 17 O 1.35746 * 120.03426 * 179.97438 * 16 15 14 18 18 C 1.34832 * 117.00514 * 186.30663 * 17 16 15 19 19 H 1.08007 * 119.99073 * 5.69441 * 18 17 16 20 20 C 1.38648 * 120.00440 * 185.69403 * 18 17 16 21 21 N 1.31562 * 119.99633 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99899 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47292 * 60.00410 * 22 20 18 24 24 H 1.48505 * 109.47040 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47417 * 299.99818 * 22 20 18 26 26 C 1.38741 * 120.04108 * 35.30625 * 12 11 9 27 27 C 1.37870 * 119.91378 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46843 * 270.02248 * 1 2 3 29 29 H 1.09006 * 109.46732 * 30.02278 * 1 2 3 30 30 H 1.09001 * 109.47231 * 150.02189 * 1 2 3 31 31 H 1.08002 * 119.82954 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.91972 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.08706 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.99547 * 218.29396 * 7 6 5 35 35 H 1.08002 * 120.00473 * 195.16571 * 8 7 6 36 36 H 0.96998 * 120.00007 * 355.48480 * 11 9 8 37 37 H 1.08007 * 119.97046 * 359.97438 * 13 12 11 38 38 H 1.07999 * 119.93354 * 180.27703 * 14 13 12 39 39 H 1.07999 * 119.95718 * 179.69944 * 15 14 13 40 40 H 0.97004 * 119.99555 * 179.97438 * 21 20 18 41 41 H 1.07997 * 120.06844 * 359.97438 * 26 12 11 42 42 H 1.08006 * 120.08774 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5812 1.2102 0.0005 5 6 4.2833 0.0231 0.0016 6 6 3.5931 -1.1929 0.0071 7 6 4.3349 -2.4643 0.0144 8 6 5.4653 -2.5812 0.7399 9 6 5.7815 -1.5879 1.7675 10 8 4.9695 -0.7270 2.0519 11 7 6.9717 -1.6266 2.3988 12 6 7.3117 -0.6237 3.3116 13 6 8.6302 -0.1965 3.4166 14 6 8.9658 0.7988 4.3140 15 6 7.9948 1.3639 5.1185 16 6 6.6763 0.9373 5.0225 17 8 5.7232 1.4927 5.8136 18 6 4.4919 0.9455 5.7649 19 1 4.3222 0.0483 5.1879 20 6 3.4436 1.5345 6.4552 21 7 3.6505 2.6270 7.1583 22 14 1.7379 0.7758 6.3882 23 1 1.7898 -0.6072 6.9264 24 1 0.8019 1.5895 7.2049 25 1 1.2662 0.7419 4.9805 26 6 6.3346 -0.0578 4.1178 27 6 2.1946 -1.1950 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6533 2.1327 -0.0004 32 1 4.1128 2.1503 0.0009 33 1 5.3632 0.0329 0.0024 34 1 3.9735 -3.3036 -0.5613 35 1 6.1375 -3.4078 0.5629 36 1 7.5922 -2.3503 2.2198 37 1 9.3923 -0.6399 2.7929 38 1 9.9902 1.1323 4.3906 39 1 8.2613 2.1384 5.8224 40 1 2.9170 3.0393 7.6410 41 1 5.3101 -0.3909 4.0411 42 1 1.6546 -2.1304 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491091342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:06 Heat of formation + Delta-G solvation = -1.918138 kcal Electronic energy + Delta-G solvation = -26578.477782 eV Core-core repulsion = 22875.183180 eV Total energy + Delta-G solvation = -3703.294602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69002 -40.56245 -39.76837 -38.21163 -35.69864 -35.02779 -34.25963 -33.18568 -31.40178 -30.66287 -30.02854 -27.70081 -27.39397 -25.48041 -23.63607 -23.21316 -22.81688 -21.94129 -20.50716 -19.67237 -19.03924 -18.32586 -17.42735 -17.18214 -16.77562 -16.34400 -16.28662 -16.04819 -15.75803 -15.54733 -15.41477 -14.96663 -14.76180 -14.50337 -14.26195 -14.21681 -13.96122 -13.63633 -13.59310 -13.23584 -13.05002 -12.92381 -12.73075 -12.62608 -12.40916 -12.19425 -12.05903 -11.97606 -11.60181 -11.22810 -10.82704 -10.76309 -10.67746 -9.63318 -9.25032 -8.97627 -8.86167 -8.51258 -6.17740 -0.33292 0.48605 0.57337 0.71094 0.99812 1.24051 1.35789 1.40591 2.12523 2.20237 2.30931 2.81272 2.92535 3.17112 3.49538 3.73959 3.87278 3.96704 4.00821 4.18727 4.20873 4.37222 4.44086 4.46996 4.50329 4.53796 4.66332 4.74075 4.80261 4.83252 4.93416 5.06094 5.07869 5.08435 5.11873 5.26514 5.29721 5.47142 5.55795 5.56810 5.65634 5.68777 5.71062 5.72201 6.01847 6.13710 6.24157 6.58720 6.94358 7.29930 7.74357 8.71756 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008407 B = 0.005772 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.583162 B = 4849.652304 C = 7245.412834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.125 4.125 4 C -0.152 4.152 5 C -0.056 4.056 6 C -0.088 4.088 7 C -0.011 4.011 8 C -0.212 4.212 9 C 0.516 3.484 10 O -0.544 6.544 11 N -0.653 5.653 12 C 0.181 3.819 13 C -0.207 4.207 14 C -0.049 4.049 15 C -0.220 4.220 16 C 0.120 3.880 17 O -0.230 6.230 18 C -0.402 4.402 19 H 0.084 0.916 20 C -0.018 4.018 21 N -0.917 5.917 22 Si 1.007 2.993 23 H -0.257 1.257 24 H -0.260 1.260 25 H -0.270 1.270 26 C -0.246 4.246 27 C -0.107 4.107 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.183 0.817 35 H 0.184 0.816 36 H 0.428 0.572 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -13.756 -18.730 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.115 4.115 3 C -0.143 4.143 4 C -0.171 4.171 5 C -0.074 4.074 6 C -0.089 4.089 7 C -0.029 4.029 8 C -0.232 4.232 9 C 0.307 3.693 10 O -0.423 6.423 11 N -0.300 5.300 12 C 0.086 3.914 13 C -0.227 4.227 14 C -0.067 4.067 15 C -0.240 4.240 16 C 0.069 3.931 17 O -0.136 6.136 18 C -0.478 4.478 19 H 0.101 0.899 20 C -0.215 4.215 21 N -0.555 5.555 22 Si 0.826 3.174 23 H -0.181 1.181 24 H -0.183 1.183 25 H -0.195 1.195 26 C -0.268 4.268 27 C -0.124 4.124 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.201 0.799 35 H 0.201 0.799 36 H 0.268 0.732 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.795 -12.863 -18.284 22.427 hybrid contribution -0.442 0.211 0.560 0.744 sum 1.352 -12.651 -17.724 21.818 Atomic orbital electron populations 1.20788 0.89309 1.03994 1.02349 1.20138 0.97576 0.92962 1.00840 1.21312 0.94099 0.98577 1.00291 1.21129 0.95118 0.98298 1.02520 1.21083 0.98603 0.92425 0.95270 1.19241 0.93929 0.93677 1.02005 1.22818 0.91039 0.94791 0.94299 1.23092 1.00628 1.01537 0.97942 1.19551 0.81111 0.85345 0.83244 1.91020 1.47525 1.38178 1.65550 1.43337 1.19422 1.26444 1.40797 1.17572 0.93420 0.91003 0.89416 1.20920 0.94267 1.02535 1.05025 1.20970 0.99034 0.93971 0.92736 1.20546 0.90170 1.06540 1.06728 1.19867 0.90477 0.92705 0.90022 1.83934 1.18957 1.53902 1.56825 1.21509 0.83858 1.10058 1.32384 0.89900 1.26393 1.03262 0.96468 0.95386 1.70156 1.34259 1.20299 1.30828 0.84832 0.75054 0.78626 0.78851 1.18104 1.18345 1.19498 1.21175 1.00948 1.04025 1.00635 1.21424 0.92906 0.98481 0.99635 0.91943 0.90720 0.89530 0.85588 0.86950 0.88000 0.79947 0.79855 0.73192 0.82016 0.81718 0.86661 0.91770 0.86673 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 10.01 71.24 0.71 -1.55 16 2 C -0.12 -3.23 5.87 -19.91 -0.12 -3.35 16 3 C -0.12 -3.95 9.69 22.35 0.22 -3.73 16 4 C -0.15 -5.28 10.03 22.23 0.22 -5.05 16 5 C -0.06 -1.84 6.64 22.58 0.15 -1.69 16 6 C -0.09 -2.46 4.65 -20.15 -0.09 -2.56 16 7 C -0.01 -0.20 9.82 23.84 0.23 0.04 16 8 C -0.21 -4.00 9.85 23.61 0.23 -3.77 16 9 C 0.52 15.80 6.44 86.36 0.56 16.36 16 10 O -0.54 -23.05 9.71 -4.37 -0.04 -23.09 16 11 N -0.65 -17.95 5.33 -307.39 -1.64 -19.59 16 12 C 0.18 6.66 6.29 38.17 0.24 6.90 16 13 C -0.21 -6.24 9.96 22.43 0.22 -6.02 16 14 C -0.05 -1.59 10.03 22.23 0.22 -1.37 16 15 C -0.22 -9.73 9.99 22.42 0.22 -9.51 16 16 C 0.12 6.50 6.64 22.56 0.15 6.65 16 17 O -0.23 -14.95 9.76 -22.71 -0.22 -15.17 16 18 C -0.40 -25.92 9.43 67.92 0.64 -25.28 16 19 H 0.08 5.26 5.31 -2.91 -0.02 5.24 16 20 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 21 N -0.92 -59.48 13.67 21.61 0.30 -59.19 16 22 Si 1.01 47.75 29.55 68.60 2.03 49.78 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 C -0.25 -12.19 7.77 22.52 0.17 -12.02 16 27 C -0.11 -2.80 9.44 22.57 0.21 -2.59 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.37 8.08 -2.38 -0.02 1.35 16 30 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 31 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.11 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.10 3.41 6.72 -2.91 -0.02 3.39 16 34 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.43 7.20 8.80 -92.71 -0.82 6.38 16 37 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.12 6.43 3.90 -2.91 -0.01 6.42 16 42 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -88.85 359.21 5.33 -83.52 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 0.24 Total: 32.90 kcal Atomic # 6 Polarization: -53.83 SS G_CDS: 4.67 Total: -49.16 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.34 Total: -78.77 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.26 Total: -38.26 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -88.85 5.33 -83.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491091342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.597 kcal (2) G-P(sol) polarization free energy of solvation -88.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds