Wall clock time and date at job start Tue Mar 31 2020 13:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37906 * 120.08731 * 2 1 4 4 C 1.38384 * 120.16959 * 179.77178 * 3 2 1 5 5 C 1.38431 * 120.34196 * 0.50775 * 4 3 2 6 6 C 1.37865 * 120.17259 * 359.74793 * 5 4 3 7 7 C 1.39820 * 120.08432 * 180.28110 * 2 1 3 8 8 C 1.47203 * 120.16954 * 359.97438 * 7 2 1 9 9 C 1.34833 * 120.00024 * 130.83372 * 8 7 2 10 10 C 1.46385 * 119.99669 * 349.81925 * 9 8 7 11 11 O 1.21710 * 120.00240 * 352.74516 * 10 9 8 12 12 N 1.34782 * 119.99675 * 172.74185 * 10 9 8 13 13 C 1.39812 * 119.99644 * 173.82096 * 12 10 9 14 14 C 1.38988 * 120.04175 * 330.01846 * 13 12 10 15 15 C 1.38154 * 120.06604 * 179.74687 * 14 13 12 16 16 C 1.38166 * 120.13747 * 0.55757 * 15 14 13 17 17 C 1.38912 * 120.07991 * 359.70113 * 16 15 14 18 18 O 1.35751 * 120.03046 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99835 * 186.17324 * 18 17 16 20 20 H 1.08002 * 119.99929 * 5.51274 * 19 18 17 21 21 C 1.38648 * 120.00270 * 185.51844 * 19 18 17 22 22 N 1.31555 * 120.00185 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00155 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47532 * 59.99953 * 23 21 19 25 25 H 1.48501 * 109.47277 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47013 * 299.99291 * 23 21 19 27 27 C 1.38745 * 120.03709 * 150.30243 * 13 12 10 28 28 H 1.09003 * 109.47007 * 269.72068 * 1 2 3 29 29 H 1.08999 * 109.47512 * 149.72029 * 1 2 3 30 30 H 1.08999 * 109.47107 * 29.72024 * 1 2 3 31 31 H 1.08000 * 119.91549 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.82938 * 180.27777 * 4 3 2 33 33 H 1.08001 * 119.90769 * 179.76844 * 5 4 3 34 34 H 1.08001 * 120.08331 * 180.02562 * 6 5 4 35 35 H 1.07997 * 119.99910 * 310.82459 * 8 7 2 36 36 H 1.08001 * 120.00289 * 169.82549 * 9 8 7 37 37 H 0.97001 * 120.00300 * 353.82354 * 12 10 9 38 38 H 1.08000 * 119.96660 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.92691 * 180.27654 * 15 14 13 40 40 H 1.08001 * 119.96000 * 179.72154 * 16 15 14 41 41 H 0.97002 * 120.00631 * 180.02562 * 22 21 19 42 42 H 1.07999 * 120.07107 * 359.95319 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5822 1.1952 0.0048 5 6 4.2832 0.0016 -0.0010 6 6 3.6064 -1.1995 -0.0063 7 6 2.2079 -1.2098 -0.0059 8 6 1.4775 -2.4879 -0.0116 9 6 1.8056 -3.4479 -0.8997 10 6 2.7266 -3.1461 -1.9968 11 8 3.0926 -2.0010 -2.1866 12 7 3.1693 -4.1365 -2.7967 13 6 3.9439 -3.8338 -3.9206 14 6 3.7681 -2.6237 -4.5814 15 6 4.5369 -2.3218 -5.6889 16 6 5.4743 -3.2260 -6.1500 17 6 5.6511 -4.4395 -5.4973 18 8 6.5729 -5.3269 -5.9508 19 6 6.6059 -6.5347 -5.3525 20 1 5.8618 -6.7915 -4.6130 21 6 7.5950 -7.4471 -5.6865 22 7 8.5011 -7.1345 -6.5876 23 14 7.6403 -9.1207 -4.8581 24 1 6.3747 -9.8457 -5.1371 25 1 8.7865 -9.9036 -5.3860 26 1 7.7963 -8.9433 -3.3920 27 6 4.8848 -4.7435 -4.3811 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3634 -0.8874 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 1.6584 2.1286 -0.0004 32 1 4.1180 2.1329 0.0093 33 1 5.3632 0.0113 -0.0010 34 1 4.1548 -2.1299 -0.0104 35 1 0.6790 -2.6566 0.6956 36 1 1.3888 -4.4394 -0.8018 37 1 2.9505 -5.0592 -2.5927 38 1 3.0330 -1.9168 -4.2260 39 1 4.4016 -1.3790 -6.1980 40 1 6.0706 -2.9890 -7.0187 41 1 9.1930 -7.7729 -6.8215 42 1 5.0206 -5.6861 -3.8718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491150270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:09 Heat of formation + Delta-G solvation = 16.033451 kcal Electronic energy + Delta-G solvation = -25817.067212 eV Core-core repulsion = 22114.551050 eV Total energy + Delta-G solvation = -3702.516162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42375 -39.27865 -38.46290 -36.44910 -34.28485 -33.96929 -32.64239 -32.23276 -30.14585 -29.18479 -28.45551 -26.90932 -25.35890 -24.40425 -22.46236 -21.80918 -21.32706 -20.66792 -19.41269 -18.00547 -17.60497 -17.12797 -16.05823 -15.73162 -15.33996 -15.18891 -14.99863 -14.57958 -14.36733 -14.18352 -13.93210 -13.69682 -13.55455 -13.45456 -13.11962 -12.94435 -12.71707 -12.45029 -12.31748 -12.01480 -11.74682 -11.54819 -11.19138 -11.11473 -11.01533 -10.94456 -10.80101 -10.47448 -10.02419 -9.81657 -9.62248 -9.41641 -8.80515 -8.58855 -8.17878 -7.67968 -7.11932 -6.44504 -4.04420 0.66077 1.48443 1.73756 2.16331 2.42818 3.11325 3.12326 3.15529 3.35555 3.39572 3.83770 3.95856 4.55459 4.61661 4.72695 4.81967 4.86456 5.08351 5.10749 5.14651 5.21627 5.29260 5.40257 5.50797 5.58220 5.69231 5.71946 5.86492 5.94329 6.02764 6.06880 6.10566 6.15291 6.27266 6.31669 6.51493 6.56716 6.62243 6.66271 7.00079 7.01298 7.04818 7.13695 7.33985 7.43643 7.75885 7.83841 7.99605 8.37245 9.00723 9.71760 10.73597 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.002793 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.132036 B =10020.988037 C =10484.547824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.108 4.108 5 C -0.129 4.129 6 C -0.045 4.045 7 C -0.066 4.066 8 C -0.023 4.023 9 C -0.208 4.208 10 C 0.532 3.468 11 O -0.503 6.503 12 N -0.664 5.664 13 C 0.183 3.817 14 C -0.207 4.207 15 C -0.063 4.063 16 C -0.202 4.202 17 C 0.169 3.831 18 O -0.177 6.177 19 C -0.392 4.392 20 H 0.089 0.911 21 C 0.040 3.960 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.271 1.271 27 C -0.259 4.259 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.406 0.594 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.270 0.730 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.161 9.757 14.793 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.071 4.071 3 C -0.150 4.150 4 C -0.126 4.126 5 C -0.147 4.147 6 C -0.063 4.063 7 C -0.066 4.066 8 C -0.042 4.042 9 C -0.229 4.229 10 C 0.322 3.678 11 O -0.379 6.379 12 N -0.308 5.308 13 C 0.089 3.911 14 C -0.227 4.227 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.115 3.885 18 O -0.080 6.080 19 C -0.469 4.469 20 H 0.106 0.894 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.281 4.281 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.241 0.759 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.080 0.920 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.557 10.464 14.383 22.984 hybrid contribution 0.004 -1.516 0.477 1.589 sum -14.553 8.949 14.860 22.642 Atomic orbital electron populations 1.20789 0.91488 1.02813 1.01962 1.19876 0.95440 0.92310 0.99481 1.20802 0.94232 0.97048 1.02924 1.21141 0.94201 0.97872 0.99383 1.20949 0.99764 0.92429 1.01606 1.21029 0.92676 0.97866 0.94700 1.18688 0.93212 0.92031 1.02692 1.22338 0.95018 0.91463 0.95391 1.23012 1.02403 1.00395 0.97092 1.18506 0.81123 0.85381 0.82828 1.90919 1.56116 1.19978 1.70878 1.43472 1.51609 1.10217 1.25475 1.17412 0.91795 0.95335 0.86518 1.20609 1.05446 0.97946 0.98734 1.20532 0.94638 0.97701 0.95306 1.20242 1.04229 0.94167 1.03591 1.19068 0.88823 0.89853 0.90780 1.84021 1.47492 1.22333 1.54173 1.21211 1.14008 0.88048 1.23586 0.89361 1.25268 0.94783 0.99655 0.96759 1.70024 1.14348 1.35991 1.29423 0.85809 0.78316 0.80297 0.79146 1.19532 1.20270 1.19586 1.20787 1.01980 1.02695 1.02627 0.91297 0.91636 0.91549 0.86471 0.86499 0.86353 0.86934 0.84724 0.84785 0.75948 0.85991 0.86749 0.86477 0.91973 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.62 36.01 0.35 -0.59 16 2 C -0.07 -0.80 5.92 -104.15 -0.62 -1.42 16 3 C -0.13 -1.47 9.69 -39.65 -0.38 -1.85 16 4 C -0.11 -1.26 10.04 -39.46 -0.40 -1.65 16 5 C -0.13 -1.68 10.03 -39.65 -0.40 -2.08 16 6 C -0.04 -0.60 6.79 -39.11 -0.27 -0.87 16 7 C -0.07 -0.81 4.31 -105.06 -0.45 -1.26 16 8 C -0.02 -0.22 8.27 -37.15 -0.31 -0.53 16 9 C -0.21 -2.14 9.95 -37.51 -0.37 -2.52 16 10 C 0.53 7.75 6.73 -12.98 -0.09 7.66 16 11 O -0.50 -8.81 9.97 5.18 0.05 -8.76 16 12 N -0.66 -10.02 5.34 -11.15 -0.06 -10.08 16 13 C 0.18 3.52 6.33 -83.75 -0.53 2.99 16 14 C -0.21 -4.03 8.67 -39.33 -0.34 -4.37 16 15 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 16 C -0.20 -4.42 9.99 -39.36 -0.39 -4.81 16 17 C 0.17 4.13 6.64 -39.14 -0.26 3.87 16 18 O -0.18 -5.05 9.76 0.04 0.00 -5.05 16 19 C -0.39 -10.89 9.44 30.88 0.29 -10.59 16 20 H 0.09 2.24 5.31 -52.49 -0.28 1.96 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.30 13.67 55.48 0.76 -24.55 16 23 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 C -0.26 -5.64 9.03 -39.20 -0.35 -5.99 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 7.09 -51.93 -0.37 0.16 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.11 1.57 7.51 -52.49 -0.39 1.17 16 35 H 0.14 0.87 8.05 -52.49 -0.42 0.44 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.41 4.82 8.78 -40.82 -0.36 4.46 16 38 H 0.12 2.36 6.18 -52.49 -0.32 2.04 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 2.73 5.72 -52.49 -0.30 2.43 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -33.55 358.10 -8.85 -42.40 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.96 Total: 10.02 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -5.02 Total: -24.65 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.70 Total: -34.62 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.05 Total: -13.81 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.55 -8.85 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491150270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.435 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds