Wall clock time and date at job start Tue Mar 31 2020 13:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37906 * 120.08731 * 2 1 4 4 C 1.38384 * 120.16959 * 179.77178 * 3 2 1 5 5 C 1.38431 * 120.34196 * 0.50775 * 4 3 2 6 6 C 1.37865 * 120.17259 * 359.74793 * 5 4 3 7 7 C 1.39820 * 120.08432 * 180.28110 * 2 1 3 8 8 C 1.47203 * 120.16954 * 359.97438 * 7 2 1 9 9 C 1.34833 * 120.00024 * 130.83372 * 8 7 2 10 10 C 1.46385 * 119.99669 * 349.81925 * 9 8 7 11 11 O 1.21710 * 120.00240 * 352.74516 * 10 9 8 12 12 N 1.34782 * 119.99675 * 172.74185 * 10 9 8 13 13 C 1.39812 * 119.99644 * 173.82096 * 12 10 9 14 14 C 1.38988 * 120.04175 * 330.01846 * 13 12 10 15 15 C 1.38154 * 120.06604 * 179.74687 * 14 13 12 16 16 C 1.38166 * 120.13747 * 0.55757 * 15 14 13 17 17 C 1.38912 * 120.07991 * 359.70113 * 16 15 14 18 18 O 1.35751 * 120.03046 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99835 * 186.17324 * 18 17 16 20 20 H 1.08002 * 119.99929 * 5.51274 * 19 18 17 21 21 C 1.38648 * 120.00270 * 185.51844 * 19 18 17 22 22 N 1.31555 * 120.00185 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00155 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47532 * 59.99953 * 23 21 19 25 25 H 1.48501 * 109.47277 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47013 * 299.99291 * 23 21 19 27 27 C 1.38745 * 120.03709 * 150.30243 * 13 12 10 28 28 H 1.09003 * 109.47007 * 269.72068 * 1 2 3 29 29 H 1.08999 * 109.47512 * 149.72029 * 1 2 3 30 30 H 1.08999 * 109.47107 * 29.72024 * 1 2 3 31 31 H 1.08000 * 119.91549 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.82938 * 180.27777 * 4 3 2 33 33 H 1.08001 * 119.90769 * 179.76844 * 5 4 3 34 34 H 1.08001 * 120.08331 * 180.02562 * 6 5 4 35 35 H 1.07997 * 119.99910 * 310.82459 * 8 7 2 36 36 H 1.08001 * 120.00289 * 169.82549 * 9 8 7 37 37 H 0.97001 * 120.00300 * 353.82354 * 12 10 9 38 38 H 1.08000 * 119.96660 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.92691 * 180.27654 * 15 14 13 40 40 H 1.08001 * 119.96000 * 179.72154 * 16 15 14 41 41 H 0.97002 * 120.00631 * 180.02562 * 22 21 19 42 42 H 1.07999 * 120.07107 * 359.95319 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5822 1.1952 0.0048 5 6 4.2832 0.0016 -0.0010 6 6 3.6064 -1.1995 -0.0063 7 6 2.2079 -1.2098 -0.0059 8 6 1.4775 -2.4879 -0.0116 9 6 1.8056 -3.4479 -0.8997 10 6 2.7266 -3.1461 -1.9968 11 8 3.0926 -2.0010 -2.1866 12 7 3.1693 -4.1365 -2.7967 13 6 3.9439 -3.8338 -3.9206 14 6 3.7681 -2.6237 -4.5814 15 6 4.5369 -2.3218 -5.6889 16 6 5.4743 -3.2260 -6.1500 17 6 5.6511 -4.4395 -5.4973 18 8 6.5729 -5.3269 -5.9508 19 6 6.6059 -6.5347 -5.3525 20 1 5.8618 -6.7915 -4.6130 21 6 7.5950 -7.4471 -5.6865 22 7 8.5011 -7.1345 -6.5876 23 14 7.6403 -9.1207 -4.8581 24 1 6.3747 -9.8457 -5.1371 25 1 8.7865 -9.9036 -5.3860 26 1 7.7963 -8.9433 -3.3920 27 6 4.8848 -4.7435 -4.3811 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3634 -0.8874 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 1.6584 2.1286 -0.0004 32 1 4.1180 2.1329 0.0093 33 1 5.3632 0.0113 -0.0010 34 1 4.1548 -2.1299 -0.0104 35 1 0.6790 -2.6566 0.6956 36 1 1.3888 -4.4394 -0.8018 37 1 2.9505 -5.0592 -2.5927 38 1 3.0330 -1.9168 -4.2260 39 1 4.4016 -1.3790 -6.1980 40 1 6.0706 -2.9890 -7.0187 41 1 9.1930 -7.7729 -6.8215 42 1 5.0206 -5.6861 -3.8718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491150270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:09 Heat of formation + Delta-G solvation = -3.460975 kcal Electronic energy + Delta-G solvation = -25817.912554 eV Core-core repulsion = 22114.551050 eV Total energy + Delta-G solvation = -3703.361504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66665 -40.60729 -39.81927 -38.09949 -35.65827 -34.89877 -34.23381 -33.45077 -31.34469 -30.67743 -29.95587 -27.68210 -27.31961 -25.48726 -23.63709 -23.48346 -22.31023 -21.93080 -20.62381 -19.70237 -19.14885 -18.34356 -17.27683 -16.93380 -16.83951 -16.40833 -16.28440 -15.97929 -15.69124 -15.61685 -15.39265 -15.06204 -14.79460 -14.50078 -14.27597 -14.08430 -13.94440 -13.57209 -13.54634 -13.25124 -13.09182 -12.83787 -12.69679 -12.61735 -12.46720 -12.15156 -11.98746 -11.86883 -11.45700 -11.28955 -10.91887 -10.76146 -10.63263 -9.50088 -9.33083 -9.08523 -8.82657 -8.46566 -6.15680 -0.23047 0.45380 0.60176 0.69889 0.95686 1.35553 1.46672 1.52133 2.14571 2.18865 2.28038 2.85390 2.94713 3.17787 3.48611 3.74061 3.85588 4.00998 4.04458 4.13169 4.20744 4.33031 4.44290 4.47342 4.49058 4.61773 4.67029 4.75665 4.79969 4.87545 4.98470 5.01763 5.06875 5.10229 5.19356 5.24895 5.35951 5.42218 5.50395 5.64333 5.67165 5.67425 5.69186 5.74251 6.01175 6.17784 6.19462 6.54697 6.97514 7.20409 7.77361 8.76428 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.002793 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.132036 B =10020.988037 C =10484.547824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.140 4.140 4 C -0.118 4.118 5 C -0.154 4.154 6 C -0.066 4.066 7 C -0.083 4.083 8 C -0.008 4.008 9 C -0.213 4.213 10 C 0.527 3.473 11 O -0.535 6.535 12 N -0.659 5.659 13 C 0.193 3.807 14 C -0.201 4.201 15 C -0.052 4.052 16 C -0.218 4.218 17 C 0.136 3.864 18 O -0.227 6.227 19 C -0.414 4.414 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.264 4.264 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.177 0.823 36 H 0.174 0.826 37 H 0.422 0.578 38 H 0.131 0.869 39 H 0.150 0.850 40 H 0.117 0.883 41 H 0.273 0.727 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.565 9.900 17.199 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.078 4.078 3 C -0.158 4.158 4 C -0.136 4.136 5 C -0.172 4.172 6 C -0.084 4.084 7 C -0.083 4.083 8 C -0.027 4.027 9 C -0.233 4.233 10 C 0.319 3.681 11 O -0.413 6.413 12 N -0.304 5.304 13 C 0.098 3.902 14 C -0.222 4.222 15 C -0.071 4.071 16 C -0.238 4.238 17 C 0.085 3.915 18 O -0.133 6.133 19 C -0.490 4.490 20 H 0.120 0.880 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.178 1.178 25 H -0.199 1.199 26 H -0.181 1.181 27 C -0.286 4.286 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.194 0.806 36 H 0.191 0.809 37 H 0.260 0.740 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.022 10.626 16.828 26.849 hybrid contribution 0.889 -1.237 -0.175 1.533 sum -17.133 9.389 16.652 25.671 Atomic orbital electron populations 1.20850 0.89050 1.03419 1.03509 1.20320 0.97279 0.91914 0.98264 1.21184 0.94141 0.98292 1.02154 1.21410 0.94946 0.98059 0.99135 1.21123 1.00042 0.93210 1.02813 1.21058 0.93787 0.97372 0.96201 1.19022 0.92837 0.93835 1.02572 1.22738 0.94854 0.89742 0.95415 1.23089 1.01801 1.02501 0.95933 1.19312 0.80878 0.84592 0.83289 1.90909 1.57282 1.21334 1.71814 1.43501 1.50931 1.11648 1.24349 1.17444 0.91017 0.94450 0.87301 1.20878 1.05060 0.97965 0.98295 1.20896 0.92992 0.98265 0.94941 1.20447 1.05298 0.94098 1.03967 1.19582 0.89161 0.90446 0.92357 1.83986 1.49759 1.23407 1.56173 1.21774 1.14813 0.88475 1.23943 0.87955 1.26612 0.93972 1.04144 0.97291 1.70182 1.15785 1.37954 1.31978 0.84649 0.78917 0.74342 0.78324 1.17833 1.19852 1.18145 1.20819 1.02296 1.03328 1.02125 0.89151 0.91186 0.90822 0.84149 0.84787 0.86582 0.88439 0.80580 0.80877 0.74028 0.85125 0.83259 0.86489 0.91824 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.62 71.24 0.69 -0.72 16 2 C -0.08 -1.55 5.92 -19.56 -0.12 -1.66 16 3 C -0.14 -2.83 9.69 22.23 0.22 -2.61 16 4 C -0.12 -2.65 10.04 22.35 0.22 -2.42 16 5 C -0.15 -4.05 10.03 22.23 0.22 -3.82 16 6 C -0.07 -1.78 6.79 22.57 0.15 -1.62 16 7 C -0.08 -1.85 4.31 -20.15 -0.09 -1.93 16 8 C -0.01 -0.13 8.27 23.84 0.20 0.06 16 9 C -0.21 -3.62 9.95 23.61 0.23 -3.39 16 10 C 0.53 14.27 6.73 86.36 0.58 14.85 16 11 O -0.54 -18.11 9.97 -4.38 -0.04 -18.15 16 12 N -0.66 -18.70 5.34 -307.39 -1.64 -20.35 16 13 C 0.19 7.28 6.33 38.17 0.24 7.52 16 14 C -0.20 -7.60 8.67 22.43 0.19 -7.41 16 15 C -0.05 -1.98 10.03 22.23 0.22 -1.75 16 16 C -0.22 -9.76 9.99 22.41 0.22 -9.54 16 17 C 0.14 6.90 6.64 22.56 0.15 7.05 16 18 O -0.23 -13.71 9.76 -22.76 -0.22 -13.94 16 19 C -0.41 -23.88 9.44 67.92 0.64 -23.24 16 20 H 0.10 5.33 5.31 -2.91 -0.02 5.31 16 21 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 22 N -0.92 -56.54 13.67 21.61 0.30 -56.25 16 23 Si 1.02 42.09 29.55 68.60 2.03 44.12 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 27 C -0.26 -11.65 9.03 22.52 0.20 -11.45 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.83 7.09 -2.39 -0.02 0.81 16 30 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 31 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.10 2.79 7.51 -2.91 -0.02 2.77 16 35 H 0.18 1.30 8.05 -2.91 -0.02 1.27 16 36 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.42 9.07 8.78 -92.71 -0.81 8.26 16 38 H 0.13 4.81 6.18 -2.91 -0.02 4.79 16 39 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.13 5.56 5.72 -2.91 -0.02 5.54 16 Total: -1.00 -77.96 358.10 5.31 -72.65 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.24 Total: 34.81 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 4.65 Total: -42.90 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -1.35 Total: -76.60 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.27 Total: -32.09 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -77.96 5.31 -72.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491150270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.188 kcal (2) G-P(sol) polarization free energy of solvation -77.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds