Wall clock time and date at job start Tue Mar 31 2020 13:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37905 * 120.08978 * 2 1 4 4 C 1.38379 * 120.17073 * 180.02562 * 3 2 1 5 5 C 1.38417 * 120.34871 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.17024 * 359.74276 * 5 4 3 7 7 C 1.39822 * 120.08560 * 180.02562 * 2 1 3 8 8 C 1.47201 * 120.16748 * 359.96017 * 7 2 1 9 9 C 1.34833 * 119.99774 * 179.97438 * 8 7 2 10 10 C 1.46395 * 119.99794 * 179.72414 * 9 8 7 11 11 O 1.21705 * 119.99705 * 0.27315 * 10 9 8 12 12 N 1.34776 * 119.99851 * 180.27402 * 10 9 8 13 13 C 1.39804 * 120.00022 * 174.78723 * 12 10 9 14 14 C 1.38992 * 120.03827 * 326.13102 * 13 12 10 15 15 C 1.38155 * 120.05980 * 179.71691 * 14 13 12 16 16 C 1.38172 * 120.14581 * 0.55745 * 15 14 13 17 17 C 1.38915 * 120.07324 * 359.71482 * 16 15 14 18 18 O 1.35754 * 120.03214 * 179.97438 * 17 16 15 19 19 C 1.34821 * 117.00350 * 185.92855 * 18 17 16 20 20 H 1.08006 * 119.99804 * 5.40304 * 19 18 17 21 21 C 1.38650 * 120.00728 * 185.40654 * 19 18 17 22 22 N 1.31565 * 119.99211 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00821 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47020 * 89.99376 * 23 21 19 25 25 H 1.48494 * 109.47173 * 209.99849 * 23 21 19 26 26 H 1.48500 * 109.46822 * 329.99993 * 23 21 19 27 27 C 1.38749 * 120.04035 * 146.40285 * 13 12 10 28 28 H 1.09001 * 109.47702 * 269.98394 * 1 2 3 29 29 H 1.09011 * 109.46695 * 29.97819 * 1 2 3 30 30 H 1.09003 * 109.47507 * 149.97402 * 1 2 3 31 31 H 1.08004 * 119.91545 * 0.04567 * 3 2 1 32 32 H 1.08008 * 119.82894 * 180.02562 * 4 3 2 33 33 H 1.08003 * 119.91924 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.09039 * 180.28015 * 6 5 4 35 35 H 1.08002 * 120.00338 * 0.02562 * 8 7 2 36 36 H 1.07999 * 120.00267 * 359.97438 * 9 8 7 37 37 H 0.97001 * 119.99523 * 354.78775 * 12 10 9 38 38 H 1.07998 * 119.96806 * 359.97438 * 14 13 12 39 39 H 1.08005 * 119.92506 * 180.27647 * 15 14 13 40 40 H 1.08005 * 119.96145 * 179.74433 * 16 15 14 41 41 H 0.97002 * 119.99502 * 179.97438 * 22 21 19 42 42 H 1.08005 * 120.06748 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5822 1.1952 -0.0005 5 6 4.2832 0.0017 -0.0016 6 6 3.6064 -1.1995 0.0032 7 6 2.2079 -1.2098 -0.0005 8 6 1.4775 -2.4879 -0.0002 9 6 2.1569 -3.6526 -0.0013 10 6 1.4306 -4.9236 0.0051 11 8 0.2135 -4.9289 0.0064 12 7 2.1096 -6.0878 0.0097 13 6 1.4205 -7.2986 0.1258 14 6 0.2652 -7.3706 0.8952 15 6 -0.4195 -8.5655 1.0055 16 6 0.0478 -9.6950 0.3613 17 6 1.2050 -9.6310 -0.4046 18 8 1.6636 -10.7413 -1.0368 19 6 2.8544 -10.6424 -1.6612 20 1 3.4382 -9.7382 -1.5706 21 6 3.3296 -11.7011 -2.4199 22 7 2.6186 -12.8026 -2.5299 23 14 4.9792 -11.5638 -3.2857 24 1 6.0536 -12.0516 -2.3840 25 1 4.9592 -12.3859 -4.5221 26 1 5.2360 -10.1445 -3.6390 27 6 1.8921 -8.4311 -0.5223 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8903 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6584 2.1286 0.0007 32 1 4.1181 2.1329 -0.0001 33 1 5.3632 0.0113 -0.0016 34 1 4.1547 -2.1300 0.0069 35 1 0.3975 -2.4927 0.0000 36 1 3.2369 -3.6478 -0.0028 37 1 3.0766 -6.0854 -0.0676 38 1 -0.0999 -6.4906 1.4039 39 1 -1.3194 -8.6179 1.6003 40 1 -0.4875 -10.6285 0.4529 41 1 2.9509 -13.5433 -3.0610 42 1 2.7918 -8.3788 -1.1175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491150272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:13 Heat of formation + Delta-G solvation = 4.498549 kcal Electronic energy + Delta-G solvation = -24755.176355 eV Core-core repulsion = 21052.160002 eV Total energy + Delta-G solvation = -3703.016353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27124 -39.69996 -38.61595 -36.48279 -34.39747 -34.19228 -33.13514 -32.23783 -30.27761 -29.26269 -28.48461 -27.23151 -25.37660 -24.70366 -22.71811 -21.82250 -21.55605 -20.45009 -19.51868 -18.06998 -17.71200 -17.35380 -16.50754 -15.80960 -15.55048 -15.15911 -15.04861 -14.83507 -14.39086 -14.22478 -14.12996 -13.90850 -13.65859 -13.55932 -13.43691 -12.97121 -12.76272 -12.53694 -12.37893 -12.30029 -11.77312 -11.55659 -11.40339 -11.23005 -11.13018 -10.95819 -10.81929 -10.61424 -10.46256 -9.93570 -9.63946 -9.41816 -9.14707 -8.81026 -8.52788 -7.71990 -7.15186 -6.45051 -4.04730 0.24270 1.01653 1.67995 2.15941 2.40728 3.11200 3.11951 3.16845 3.25537 3.30387 3.57268 3.95588 4.37948 4.38662 4.48454 4.59147 4.60585 4.86111 4.91168 4.95730 5.09609 5.13937 5.25278 5.27938 5.30970 5.44598 5.63290 5.68711 5.73298 5.82295 5.95983 5.99569 6.07742 6.12115 6.17180 6.24999 6.30205 6.35762 6.59212 6.64073 6.98510 6.99068 7.12483 7.31056 7.42085 7.70712 7.81212 7.99070 8.31432 9.00290 9.70875 10.73015 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.002347 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.570580 B =11929.371020 C =13415.037751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 C -0.125 4.125 4 C -0.107 4.107 5 C -0.128 4.128 6 C -0.098 4.098 7 C -0.075 4.075 8 C -0.027 4.027 9 C -0.203 4.203 10 C 0.543 3.457 11 O -0.525 6.525 12 N -0.663 5.663 13 C 0.180 3.820 14 C -0.205 4.205 15 C -0.063 4.063 16 C -0.200 4.200 17 C 0.168 3.832 18 O -0.176 6.176 19 C -0.392 4.392 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.256 4.256 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.407 0.593 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.270 0.730 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 25.842 5.584 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.061 4.061 3 C -0.143 4.143 4 C -0.125 4.125 5 C -0.146 4.146 6 C -0.116 4.116 7 C -0.075 4.075 8 C -0.046 4.046 9 C -0.224 4.224 10 C 0.333 3.667 11 O -0.403 6.403 12 N -0.307 5.307 13 C 0.087 3.913 14 C -0.225 4.225 15 C -0.082 4.082 16 C -0.220 4.220 17 C 0.113 3.887 18 O -0.079 6.079 19 C -0.468 4.468 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.277 4.277 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.242 0.758 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.581 25.405 5.443 26.029 hybrid contribution 1.566 0.123 -0.587 1.677 sum 3.147 25.528 4.856 26.176 Atomic orbital electron populations 1.20928 0.90778 1.03443 1.02945 1.20132 0.96240 0.92244 0.97461 1.20996 0.94301 0.97467 1.01545 1.21291 0.94268 0.98233 0.98751 1.21096 1.00122 0.92323 1.01107 1.21453 0.93287 0.98585 0.98254 1.18897 0.93116 0.92431 1.03019 1.22404 1.00543 0.90244 0.91446 1.22933 1.00479 0.92123 1.06879 1.18338 0.87590 0.84087 0.76719 1.90829 1.13414 1.87572 1.48440 1.43357 1.10544 1.04738 1.72035 1.17395 0.93908 0.83980 0.96029 1.20542 0.98402 0.98447 1.05158 1.20531 0.98203 0.91707 0.97781 1.20255 0.98414 0.99283 1.04011 1.19083 0.92027 0.86381 0.91162 1.84019 1.35572 1.29096 1.59256 1.21260 0.93040 1.03097 1.29407 0.89283 1.25281 0.99734 0.94724 0.96786 1.70042 1.37476 1.04195 1.37972 0.85725 0.80320 0.78663 0.78768 1.19895 1.20258 1.19297 1.20829 1.05985 0.92584 1.08329 0.90575 0.91176 0.90684 0.85743 0.85900 0.85717 0.85346 0.84289 0.85218 0.75760 0.86371 0.86592 0.86356 0.92025 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.52 36.00 0.34 -0.53 16 2 C -0.06 -0.52 5.92 -104.15 -0.62 -1.13 16 3 C -0.13 -0.92 9.69 -39.65 -0.38 -1.31 16 4 C -0.11 -0.75 10.04 -39.46 -0.40 -1.14 16 5 C -0.13 -0.94 10.03 -39.65 -0.40 -1.34 16 6 C -0.10 -0.82 9.41 -39.11 -0.37 -1.19 16 7 C -0.07 -0.71 5.87 -105.06 -0.62 -1.32 16 8 C -0.03 -0.29 8.89 -37.15 -0.33 -0.62 16 9 C -0.20 -2.26 9.41 -37.51 -0.35 -2.61 16 10 C 0.54 8.26 7.47 -12.98 -0.10 8.16 16 11 O -0.52 -9.78 13.94 5.18 0.07 -9.71 16 12 N -0.66 -10.24 5.33 -11.15 -0.06 -10.30 16 13 C 0.18 3.50 6.26 -83.75 -0.52 2.98 16 14 C -0.20 -4.00 8.65 -39.33 -0.34 -4.34 16 15 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 16 C -0.20 -4.33 9.99 -39.36 -0.39 -4.73 16 17 C 0.17 4.10 6.64 -39.14 -0.26 3.84 16 18 O -0.18 -5.02 9.76 0.06 0.00 -5.02 16 19 C -0.39 -10.86 9.44 30.88 0.29 -10.57 16 20 H 0.09 2.26 5.30 -52.48 -0.28 1.99 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 23 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 C -0.26 -5.59 9.04 -39.20 -0.35 -5.95 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 30 H 0.07 0.56 6.33 -51.93 -0.33 0.24 16 31 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 34 H 0.13 0.88 6.17 -52.48 -0.32 0.56 16 35 H 0.14 1.54 5.82 -52.49 -0.31 1.23 16 36 H 0.13 1.06 6.07 -52.49 -0.32 0.74 16 37 H 0.41 4.89 8.80 -40.82 -0.36 4.53 16 38 H 0.12 2.25 6.45 -52.49 -0.34 1.91 16 39 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 41 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.13 2.77 5.72 -52.48 -0.30 2.47 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -33.75 360.86 -8.75 -42.50 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.64 Total: 8.70 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -5.29 Total: -22.44 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.70 Total: -34.76 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.07 Total: -14.73 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.75 -8.75 -42.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491150272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.996 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds