Wall clock time and date at job start Tue Mar 31 2020 13:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37905 * 120.08978 * 2 1 4 4 C 1.38379 * 120.17073 * 180.02562 * 3 2 1 5 5 C 1.38417 * 120.34871 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.17024 * 359.74276 * 5 4 3 7 7 C 1.39822 * 120.08560 * 180.02562 * 2 1 3 8 8 C 1.47201 * 120.16748 * 359.96017 * 7 2 1 9 9 C 1.34833 * 119.99774 * 179.97438 * 8 7 2 10 10 C 1.46395 * 119.99794 * 179.72414 * 9 8 7 11 11 O 1.21705 * 119.99705 * 0.27315 * 10 9 8 12 12 N 1.34776 * 119.99851 * 180.27402 * 10 9 8 13 13 C 1.39804 * 120.00022 * 174.78723 * 12 10 9 14 14 C 1.38992 * 120.03827 * 326.13102 * 13 12 10 15 15 C 1.38155 * 120.05980 * 179.71691 * 14 13 12 16 16 C 1.38172 * 120.14581 * 0.55745 * 15 14 13 17 17 C 1.38915 * 120.07324 * 359.71482 * 16 15 14 18 18 O 1.35754 * 120.03214 * 179.97438 * 17 16 15 19 19 C 1.34821 * 117.00350 * 185.92855 * 18 17 16 20 20 H 1.08006 * 119.99804 * 5.40304 * 19 18 17 21 21 C 1.38650 * 120.00728 * 185.40654 * 19 18 17 22 22 N 1.31565 * 119.99211 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00821 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47020 * 89.99376 * 23 21 19 25 25 H 1.48494 * 109.47173 * 209.99849 * 23 21 19 26 26 H 1.48500 * 109.46822 * 329.99993 * 23 21 19 27 27 C 1.38749 * 120.04035 * 146.40285 * 13 12 10 28 28 H 1.09001 * 109.47702 * 269.98394 * 1 2 3 29 29 H 1.09011 * 109.46695 * 29.97819 * 1 2 3 30 30 H 1.09003 * 109.47507 * 149.97402 * 1 2 3 31 31 H 1.08004 * 119.91545 * 0.04567 * 3 2 1 32 32 H 1.08008 * 119.82894 * 180.02562 * 4 3 2 33 33 H 1.08003 * 119.91924 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.09039 * 180.28015 * 6 5 4 35 35 H 1.08002 * 120.00338 * 0.02562 * 8 7 2 36 36 H 1.07999 * 120.00267 * 359.97438 * 9 8 7 37 37 H 0.97001 * 119.99523 * 354.78775 * 12 10 9 38 38 H 1.07998 * 119.96806 * 359.97438 * 14 13 12 39 39 H 1.08005 * 119.92506 * 180.27647 * 15 14 13 40 40 H 1.08005 * 119.96145 * 179.74433 * 16 15 14 41 41 H 0.97002 * 119.99502 * 179.97438 * 22 21 19 42 42 H 1.08005 * 120.06748 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5822 1.1952 -0.0005 5 6 4.2832 0.0017 -0.0016 6 6 3.6064 -1.1995 0.0032 7 6 2.2079 -1.2098 -0.0005 8 6 1.4775 -2.4879 -0.0002 9 6 2.1569 -3.6526 -0.0013 10 6 1.4306 -4.9236 0.0051 11 8 0.2135 -4.9289 0.0064 12 7 2.1096 -6.0878 0.0097 13 6 1.4205 -7.2986 0.1258 14 6 0.2652 -7.3706 0.8952 15 6 -0.4195 -8.5655 1.0055 16 6 0.0478 -9.6950 0.3613 17 6 1.2050 -9.6310 -0.4046 18 8 1.6636 -10.7413 -1.0368 19 6 2.8544 -10.6424 -1.6612 20 1 3.4382 -9.7382 -1.5706 21 6 3.3296 -11.7011 -2.4199 22 7 2.6186 -12.8026 -2.5299 23 14 4.9792 -11.5638 -3.2857 24 1 6.0536 -12.0516 -2.3840 25 1 4.9592 -12.3859 -4.5221 26 1 5.2360 -10.1445 -3.6390 27 6 1.8921 -8.4311 -0.5223 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8903 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6584 2.1286 0.0007 32 1 4.1181 2.1329 -0.0001 33 1 5.3632 0.0113 -0.0016 34 1 4.1547 -2.1300 0.0069 35 1 0.3975 -2.4927 0.0000 36 1 3.2369 -3.6478 -0.0028 37 1 3.0766 -6.0854 -0.0676 38 1 -0.0999 -6.4906 1.4039 39 1 -1.3194 -8.6179 1.6003 40 1 -0.4875 -10.6285 0.4529 41 1 2.9509 -13.5433 -3.0610 42 1 2.7918 -8.3788 -1.1175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491150272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:12 Heat of formation + Delta-G solvation = -14.937225 kcal Electronic energy + Delta-G solvation = -24756.019153 eV Core-core repulsion = 21052.160002 eV Total energy + Delta-G solvation = -3703.859152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59867 -40.52949 -40.15370 -38.16623 -35.69086 -35.14726 -34.23101 -33.70783 -31.34396 -30.73848 -29.94801 -27.84113 -27.31601 -25.66454 -23.73660 -23.51140 -22.46782 -21.59299 -20.59736 -19.77558 -19.19891 -18.52938 -17.44363 -17.06165 -16.83079 -16.53955 -16.28563 -15.94332 -15.70481 -15.64787 -15.48247 -15.19164 -14.77587 -14.61290 -14.42819 -14.16632 -13.98412 -13.58550 -13.43143 -13.24008 -13.07324 -12.96899 -12.77533 -12.61682 -12.48914 -12.11952 -11.96798 -11.80449 -11.48098 -11.38563 -11.32079 -10.97287 -10.72735 -9.70806 -9.40691 -9.19630 -8.86681 -8.46335 -6.15133 -0.53469 0.41336 0.46030 0.67995 1.04885 1.36215 1.45937 1.53802 2.04808 2.18225 2.19949 2.83563 2.91920 3.16720 3.47810 3.53615 3.78537 3.93337 4.02122 4.04088 4.14663 4.30367 4.31914 4.41419 4.43525 4.50343 4.61395 4.72376 4.74412 4.77130 4.87743 4.99252 5.02776 5.09865 5.10832 5.18183 5.28844 5.39713 5.48072 5.56761 5.57928 5.65110 5.66020 5.69204 6.01406 6.04811 6.15718 6.45422 6.97842 7.08473 7.77167 8.76657 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.002347 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.570580 B =11929.371020 C =13415.037751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.134 4.134 4 C -0.105 4.105 5 C -0.137 4.137 6 C -0.104 4.104 7 C -0.100 4.100 8 C -0.009 4.009 9 C -0.215 4.215 10 C 0.543 3.457 11 O -0.565 6.565 12 N -0.657 5.657 13 C 0.186 3.814 14 C -0.200 4.200 15 C -0.051 4.051 16 C -0.213 4.213 17 C 0.134 3.866 18 O -0.226 6.226 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.251 1.251 27 C -0.260 4.260 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.162 0.838 37 H 0.424 0.576 38 H 0.129 0.871 39 H 0.155 0.845 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 29.482 6.041 30.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.071 4.071 3 C -0.152 4.152 4 C -0.123 4.123 5 C -0.155 4.155 6 C -0.122 4.122 7 C -0.101 4.101 8 C -0.029 4.029 9 C -0.235 4.235 10 C 0.336 3.664 11 O -0.445 6.445 12 N -0.301 5.301 13 C 0.091 3.909 14 C -0.221 4.221 15 C -0.070 4.070 16 C -0.233 4.233 17 C 0.083 3.917 18 O -0.132 6.132 19 C -0.489 4.489 20 H 0.120 0.880 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.838 3.162 24 H -0.187 1.187 25 H -0.199 1.199 26 H -0.175 1.175 27 C -0.282 4.282 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.179 0.821 37 H 0.263 0.737 38 H 0.147 0.853 39 H 0.172 0.828 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.215 29.106 5.932 29.878 hybrid contribution 0.904 -0.655 -0.568 1.252 sum 4.119 28.451 5.364 29.244 Atomic orbital electron populations 1.20959 0.90229 1.03689 1.03306 1.20385 0.96932 0.92527 0.97218 1.21298 0.94840 0.97827 1.01198 1.21683 0.94315 0.99272 0.97010 1.21423 1.01353 0.92065 1.00637 1.21701 0.92925 0.99783 0.97742 1.18943 0.93813 0.92011 1.05284 1.22486 1.00254 0.90940 0.89197 1.22810 1.01664 0.89868 1.09202 1.18966 0.87291 0.84915 0.75248 1.90804 1.15245 1.88092 1.50363 1.43335 1.11437 1.03539 1.71826 1.17450 0.93882 0.84781 0.94744 1.20863 0.98080 0.98851 1.04310 1.20925 0.98941 0.90412 0.96709 1.20489 0.98010 1.00516 1.04294 1.19611 0.93509 0.86659 0.91968 1.83985 1.36553 1.31337 1.61311 1.21802 0.93520 1.03949 1.29624 0.87955 1.26614 1.04152 0.93993 0.97329 1.70194 1.40175 1.05453 1.39927 0.84579 0.74726 0.79509 0.77349 1.18680 1.19863 1.17465 1.20856 1.05945 0.92657 1.08697 0.90131 0.89675 0.91716 0.83786 0.83480 0.83635 0.84074 0.85339 0.82116 0.73735 0.85278 0.82761 0.86161 0.91842 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.52 71.24 0.68 -0.92 16 2 C -0.07 -1.08 5.92 -19.56 -0.12 -1.19 16 3 C -0.13 -1.61 9.69 22.22 0.22 -1.40 16 4 C -0.10 -1.12 10.04 22.35 0.22 -0.90 16 5 C -0.14 -1.59 10.03 22.23 0.22 -1.36 16 6 C -0.10 -1.48 9.41 22.57 0.21 -1.27 16 7 C -0.10 -1.73 5.87 -20.15 -0.12 -1.85 16 8 C -0.01 -0.18 8.89 23.84 0.21 0.03 16 9 C -0.22 -4.40 9.41 23.61 0.22 -4.17 16 10 C 0.54 15.83 7.47 86.37 0.65 16.48 16 11 O -0.56 -20.65 13.94 -4.36 -0.06 -20.71 16 12 N -0.66 -19.34 5.33 -307.39 -1.64 -20.98 16 13 C 0.19 7.10 6.26 38.17 0.24 7.34 16 14 C -0.20 -7.55 8.65 22.43 0.19 -7.36 16 15 C -0.05 -1.90 10.03 22.23 0.22 -1.68 16 16 C -0.21 -9.40 9.99 22.42 0.22 -9.17 16 17 C 0.13 6.77 6.64 22.56 0.15 6.92 16 18 O -0.23 -13.55 9.76 -22.69 -0.22 -13.77 16 19 C -0.41 -23.73 9.44 67.92 0.64 -23.09 16 20 H 0.10 5.33 5.30 -2.91 -0.02 5.31 16 21 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 22 N -0.92 -56.20 13.67 21.61 0.30 -55.90 16 23 Si 1.02 42.09 29.55 68.60 2.03 44.12 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 27 C -0.26 -11.50 9.04 22.52 0.20 -11.30 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.79 8.09 -2.38 -0.02 0.77 16 30 H 0.06 0.94 6.33 -2.39 -0.02 0.93 16 31 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 32 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 33 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.14 1.52 6.17 -2.91 -0.02 1.50 16 35 H 0.13 2.81 5.82 -2.91 -0.02 2.79 16 36 H 0.16 2.18 6.07 -2.91 -0.02 2.16 16 37 H 0.42 9.41 8.80 -92.71 -0.82 8.60 16 38 H 0.13 4.67 6.45 -2.91 -0.02 4.65 16 39 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.12 5.13 8.06 -2.91 -0.02 5.10 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.13 5.62 5.72 -2.91 -0.02 5.60 16 Total: -1.00 -76.87 360.86 5.40 -71.47 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.26 Total: 31.49 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 4.74 Total: -35.73 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -1.34 Total: -76.88 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.28 Total: -34.48 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -76.87 5.40 -71.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491150272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.533 kcal (2) G-P(sol) polarization free energy of solvation -76.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds