Wall clock time and date at job start Tue Mar 31 2020 13:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86804 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46758 * 299.99692 * 3 2 1 6 6 H 1.48494 * 109.46962 * 59.99698 * 3 2 1 7 7 C 1.39918 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99552 * 187.25380 * 7 2 1 9 9 C 1.41126 * 119.99729 * 7.25435 * 7 2 1 10 10 C 1.40889 * 120.15735 * 212.18043 * 9 7 2 11 11 C 1.36359 * 119.82781 * 180.02562 * 10 9 7 12 12 C 1.39519 * 120.16667 * 0.02562 * 11 10 9 13 13 N 1.39109 * 119.83294 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99730 * 33.71920 * 13 12 11 15 15 O 1.21626 * 120.00308 * 3.21826 * 14 13 12 16 16 C 1.47038 * 119.99464 * 182.95157 * 14 13 12 17 17 C 1.33044 * 119.99806 * 187.09930 * 16 14 13 18 18 C 1.50705 * 120.00009 * 14.89674 * 17 16 14 19 19 O 1.42900 * 109.47067 * 136.00330 * 18 17 16 20 20 C 1.35902 * 116.99820 * 179.97438 * 19 18 17 21 21 C 1.38734 * 120.05562 * 359.73379 * 20 19 18 22 22 C 1.38140 * 119.94437 * 179.74450 * 21 20 19 23 23 C 1.38267 * 120.05566 * 0.50326 * 22 21 20 24 24 C 1.38274 * 120.10981 * 359.76803 * 23 22 21 25 25 C 1.38140 * 120.05583 * 359.97438 * 24 23 22 26 26 C 1.39513 * 120.32957 * 0.27672 * 12 11 10 27 27 C 1.36361 * 120.16439 * 359.44221 * 26 12 11 28 28 H 0.97002 * 119.99398 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.08726 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91235 * 179.97438 * 11 10 9 31 31 H 0.96995 * 119.99657 * 213.70707 * 13 12 11 32 32 H 1.08002 * 120.00389 * 7.09210 * 16 14 13 33 33 H 1.07995 * 119.99883 * 194.89056 * 17 16 14 34 34 H 1.08998 * 109.46955 * 256.00946 * 18 17 16 35 35 H 1.09005 * 109.46839 * 16.00568 * 18 17 16 36 36 H 1.08001 * 120.02592 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.97606 * 180.27237 * 22 21 20 38 38 H 1.07997 * 119.95136 * 179.74617 * 23 22 21 39 39 H 1.07997 * 119.97256 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.03127 * 179.97438 * 25 24 23 41 41 H 1.08004 * 119.91923 * 179.70318 * 26 12 11 42 42 H 1.07996 * 120.08523 * 180.25244 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8841 2.3963 -1.2126 6 1 1.8841 2.3964 1.2124 7 6 2.0083 -1.2118 0.0005 8 1 3.0818 -1.2154 0.1186 9 6 1.3110 -2.4291 -0.1532 10 6 1.7796 -3.5979 0.4786 11 6 1.1009 -4.7706 0.3250 12 6 -0.0544 -4.8149 -0.4559 13 7 -0.7411 -6.0150 -0.6083 14 6 -0.7798 -6.9026 0.4052 15 8 -0.2645 -6.6298 1.4726 16 6 -1.4501 -8.1985 0.2223 17 6 -1.6128 -9.0155 1.2596 18 6 -1.4259 -8.4983 2.6628 19 8 -2.4801 -8.9867 3.4948 20 6 -2.4598 -8.6109 4.8006 21 6 -1.4431 -7.7935 5.2728 22 6 -1.4276 -7.4086 6.5994 23 6 -2.4186 -7.8457 7.4588 24 6 -3.4299 -8.6650 6.9920 25 6 -3.4528 -9.0484 5.6651 26 6 -0.5210 -3.6629 -1.0897 27 6 0.1439 -2.4818 -0.9406 28 1 -0.4849 0.8401 -0.0004 29 1 2.6740 -3.5652 1.0829 30 1 1.4592 -5.6675 0.8084 31 1 -1.1921 -6.2130 -1.4438 32 1 -1.8104 -8.4871 -0.7541 33 1 -1.8789 -10.0493 1.0961 34 1 -0.4672 -8.8415 3.0518 35 1 -1.4452 -7.4085 2.6538 36 1 -0.6663 -7.4554 4.6028 37 1 -0.6388 -6.7687 6.9664 38 1 -2.4026 -7.5471 8.4966 39 1 -4.2026 -9.0055 7.6653 40 1 -4.2427 -9.6886 5.3010 41 1 -1.4134 -3.7058 -1.6965 42 1 -0.2207 -1.5900 -1.4285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492927078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:52 Heat of formation + Delta-G solvation = 0.953576 kcal Electronic energy + Delta-G solvation = -25155.144633 eV Core-core repulsion = 21451.974558 eV Total energy + Delta-G solvation = -3703.170075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.26918 -39.71741 -37.68601 -37.20763 -34.68167 -33.61820 -32.97923 -31.07037 -29.97195 -29.64496 -29.02871 -27.04967 -25.05440 -23.02026 -22.43987 -21.84797 -21.33065 -20.37073 -19.20659 -18.24695 -17.40630 -17.01937 -16.52800 -15.99600 -15.96537 -15.54765 -15.22544 -14.61677 -14.46808 -14.13232 -13.93611 -13.67591 -13.47420 -13.07318 -12.94294 -12.64722 -12.55594 -12.23891 -12.00227 -11.81549 -11.63675 -11.46710 -11.23096 -11.14428 -10.99904 -10.94166 -10.70972 -9.94508 -9.62407 -9.50322 -9.43878 -9.14795 -9.06300 -8.87556 -8.22428 -7.59912 -6.93025 -6.70742 -4.35645 1.15553 1.28285 1.39290 2.61870 3.03903 3.05608 3.07713 3.12654 3.24629 3.62890 3.72622 3.74164 3.94079 4.65030 4.67848 4.80235 4.90247 4.94022 5.10795 5.19750 5.28657 5.32627 5.40832 5.61337 5.62509 5.66361 5.93970 6.04749 6.13924 6.22167 6.27462 6.36662 6.39468 6.47642 6.70673 6.72600 6.87546 7.01927 7.15037 7.23897 7.38572 7.56377 7.67025 7.81068 8.00660 8.21206 8.24772 8.55941 8.67458 8.86877 8.94832 10.22880 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.002624 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.741236 B =10669.471697 C =12189.051074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.105 3.895 10 C -0.209 4.209 11 C -0.079 4.079 12 C -0.003 4.003 13 N -0.640 5.640 14 C 0.521 3.479 15 O -0.532 6.532 16 C -0.191 4.191 17 C -0.072 4.072 18 C 0.065 3.935 19 O -0.321 6.321 20 C 0.135 3.865 21 C -0.204 4.204 22 C -0.079 4.079 23 C -0.164 4.164 24 C -0.086 4.086 25 C -0.158 4.158 26 C -0.117 4.117 27 C -0.143 4.143 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.397 0.603 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -15.232 4.925 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.229 4.229 11 C -0.099 4.099 12 C -0.096 4.096 13 N -0.281 5.281 14 C 0.311 3.689 15 O -0.413 6.413 16 C -0.212 4.212 17 C -0.091 4.091 18 C -0.009 4.009 19 O -0.236 6.236 20 C 0.090 3.910 21 C -0.223 4.223 22 C -0.097 4.097 23 C -0.182 4.182 24 C -0.104 4.104 25 C -0.177 4.177 26 C -0.137 4.137 27 C -0.163 4.163 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.231 0.769 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.109 0.891 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.032 -14.993 5.545 17.086 hybrid contribution 0.195 0.775 -0.477 0.931 sum -5.838 -14.217 5.068 16.183 Atomic orbital electron populations 1.69805 1.07364 1.28906 1.37005 1.25902 0.94891 1.01221 0.92506 0.86192 0.80717 0.80890 0.78482 1.18509 1.19842 1.19996 1.19564 0.95267 0.90278 1.43901 0.90424 1.17701 0.91699 0.92219 0.88091 1.20750 1.02896 0.93698 1.05574 1.20284 0.93370 0.97736 0.98540 1.17205 0.96780 0.84628 1.10943 1.42915 1.51928 1.17600 1.15670 1.18599 0.81633 0.84628 0.84035 1.90683 1.46973 1.78272 1.25359 1.22770 1.03141 0.94637 1.00697 1.23246 0.94512 0.98790 0.92595 1.22462 0.89153 1.01947 0.87290 1.85937 1.49491 1.70569 1.17558 1.18994 0.94572 0.94124 0.83325 1.21481 1.00678 1.02448 0.97652 1.21015 0.98095 0.97794 0.92804 1.21057 0.96200 1.00969 0.99967 1.20921 0.98069 0.96905 0.94471 1.20414 0.99584 1.04736 0.92919 1.20258 0.99083 0.92294 1.02046 1.20945 0.98483 0.95766 1.01063 0.91030 0.88590 0.87819 0.76915 0.84594 0.84966 0.90621 0.86868 0.84699 0.85721 0.86089 0.85613 0.85451 0.89062 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.80 10.89 55.55 0.61 -20.20 16 2 C 0.07 1.78 5.29 -17.33 -0.09 1.68 16 3 Si 0.91 18.71 29.57 -169.99 -5.03 13.68 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.13 9.03 -37.86 -0.34 -12.47 16 8 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 9 C 0.11 2.80 5.52 -106.80 -0.59 2.21 16 10 C -0.21 -5.22 9.74 -39.26 -0.38 -5.61 16 11 C -0.08 -1.86 8.57 -39.78 -0.34 -2.20 16 12 C 0.00 -0.07 6.29 -83.61 -0.53 -0.59 16 13 N -0.64 -10.84 5.30 -10.83 -0.06 -10.90 16 14 C 0.52 8.64 7.28 -12.69 -0.09 8.54 16 15 O -0.53 -10.56 10.96 5.25 0.06 -10.51 16 16 C -0.19 -2.25 10.01 -37.82 -0.38 -2.63 16 17 C -0.07 -0.81 9.94 -36.11 -0.36 -1.17 16 18 C 0.06 0.89 4.06 36.01 0.15 1.03 16 19 O -0.32 -4.48 10.12 -19.43 -0.20 -4.68 16 20 C 0.14 1.85 6.69 -39.22 -0.26 1.59 16 21 C -0.20 -2.79 9.04 -39.43 -0.36 -3.14 16 22 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 23 C -0.16 -1.74 10.04 -39.56 -0.40 -2.13 16 24 C -0.09 -0.88 10.04 -39.60 -0.40 -1.28 16 25 C -0.16 -1.85 9.99 -39.43 -0.39 -2.25 16 26 C -0.12 -2.62 9.89 -39.78 -0.39 -3.01 16 27 C -0.14 -3.62 8.58 -39.26 -0.34 -3.96 16 28 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 29 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.10 2.36 6.35 -52.49 -0.33 2.03 16 31 H 0.40 5.18 8.79 -40.82 -0.36 4.82 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.08 1.00 7.65 -51.93 -0.40 0.60 16 35 H 0.11 1.87 4.87 -51.93 -0.25 1.62 16 36 H 0.14 1.91 6.30 -52.49 -0.33 1.58 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.12 3.19 6.36 -52.49 -0.33 2.86 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -30.33 359.14 -10.03 -40.36 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.94 Total: 13.56 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -5.89 Total: -26.73 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.55 Total: -31.10 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.14 Total: -15.18 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.33 -10.03 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492927078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.312 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds