Wall clock time and date at job start Tue Mar 31 2020 13:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86804 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46758 * 299.99692 * 3 2 1 6 6 H 1.48494 * 109.46962 * 59.99698 * 3 2 1 7 7 C 1.39918 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99552 * 187.25380 * 7 2 1 9 9 C 1.41126 * 119.99729 * 7.25435 * 7 2 1 10 10 C 1.40889 * 120.15735 * 212.18043 * 9 7 2 11 11 C 1.36359 * 119.82781 * 180.02562 * 10 9 7 12 12 C 1.39519 * 120.16667 * 0.02562 * 11 10 9 13 13 N 1.39109 * 119.83294 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99730 * 33.71920 * 13 12 11 15 15 O 1.21626 * 120.00308 * 3.21826 * 14 13 12 16 16 C 1.47038 * 119.99464 * 182.95157 * 14 13 12 17 17 C 1.33044 * 119.99806 * 187.09930 * 16 14 13 18 18 C 1.50705 * 120.00009 * 14.89674 * 17 16 14 19 19 O 1.42900 * 109.47067 * 136.00330 * 18 17 16 20 20 C 1.35902 * 116.99820 * 179.97438 * 19 18 17 21 21 C 1.38734 * 120.05562 * 359.73379 * 20 19 18 22 22 C 1.38140 * 119.94437 * 179.74450 * 21 20 19 23 23 C 1.38267 * 120.05566 * 0.50326 * 22 21 20 24 24 C 1.38274 * 120.10981 * 359.76803 * 23 22 21 25 25 C 1.38140 * 120.05583 * 359.97438 * 24 23 22 26 26 C 1.39513 * 120.32957 * 0.27672 * 12 11 10 27 27 C 1.36361 * 120.16439 * 359.44221 * 26 12 11 28 28 H 0.97002 * 119.99398 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.08726 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91235 * 179.97438 * 11 10 9 31 31 H 0.96995 * 119.99657 * 213.70707 * 13 12 11 32 32 H 1.08002 * 120.00389 * 7.09210 * 16 14 13 33 33 H 1.07995 * 119.99883 * 194.89056 * 17 16 14 34 34 H 1.08998 * 109.46955 * 256.00946 * 18 17 16 35 35 H 1.09005 * 109.46839 * 16.00568 * 18 17 16 36 36 H 1.08001 * 120.02592 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.97606 * 180.27237 * 22 21 20 38 38 H 1.07997 * 119.95136 * 179.74617 * 23 22 21 39 39 H 1.07997 * 119.97256 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.03127 * 179.97438 * 25 24 23 41 41 H 1.08004 * 119.91923 * 179.70318 * 26 12 11 42 42 H 1.07996 * 120.08523 * 180.25244 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8841 2.3963 -1.2126 6 1 1.8841 2.3964 1.2124 7 6 2.0083 -1.2118 0.0005 8 1 3.0818 -1.2154 0.1186 9 6 1.3110 -2.4291 -0.1532 10 6 1.7796 -3.5979 0.4786 11 6 1.1009 -4.7706 0.3250 12 6 -0.0544 -4.8149 -0.4559 13 7 -0.7411 -6.0150 -0.6083 14 6 -0.7798 -6.9026 0.4052 15 8 -0.2645 -6.6298 1.4726 16 6 -1.4501 -8.1985 0.2223 17 6 -1.6128 -9.0155 1.2596 18 6 -1.4259 -8.4983 2.6628 19 8 -2.4801 -8.9867 3.4948 20 6 -2.4598 -8.6109 4.8006 21 6 -1.4431 -7.7935 5.2728 22 6 -1.4276 -7.4086 6.5994 23 6 -2.4186 -7.8457 7.4588 24 6 -3.4299 -8.6650 6.9920 25 6 -3.4528 -9.0484 5.6651 26 6 -0.5210 -3.6629 -1.0897 27 6 0.1439 -2.4818 -0.9406 28 1 -0.4849 0.8401 -0.0004 29 1 2.6740 -3.5652 1.0829 30 1 1.4592 -5.6675 0.8084 31 1 -1.1921 -6.2130 -1.4438 32 1 -1.8104 -8.4871 -0.7541 33 1 -1.8789 -10.0493 1.0961 34 1 -0.4672 -8.8415 3.0518 35 1 -1.4452 -7.4085 2.6538 36 1 -0.6663 -7.4554 4.6028 37 1 -0.6388 -6.7687 6.9664 38 1 -2.4026 -7.5471 8.4966 39 1 -4.2026 -9.0055 7.6653 40 1 -4.2427 -9.6886 5.3010 41 1 -1.4134 -3.7058 -1.6965 42 1 -0.2207 -1.5900 -1.4285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492927078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:51 Heat of formation + Delta-G solvation = -15.256338 kcal Electronic energy + Delta-G solvation = -25155.847548 eV Core-core repulsion = 21451.974558 eV Total energy + Delta-G solvation = -3703.872989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48310 -40.92608 -39.24863 -38.35940 -36.30937 -34.77202 -34.68605 -31.98585 -31.53562 -31.05829 -30.66863 -28.25477 -26.72525 -24.28208 -23.54243 -23.11414 -22.83544 -22.01811 -20.52290 -19.27706 -19.22800 -18.19048 -18.08050 -17.18582 -17.01084 -16.91534 -16.61886 -16.07531 -15.66568 -15.39205 -15.23736 -14.95580 -14.73144 -14.37635 -14.30125 -14.01834 -13.95899 -13.66990 -13.53222 -13.28890 -13.06995 -12.88728 -12.80939 -12.51231 -12.46469 -12.16479 -11.87895 -11.68128 -11.40285 -11.24507 -10.87792 -10.49334 -10.37502 -9.97946 -9.49908 -9.19628 -8.76411 -8.56294 -6.32421 0.11628 0.36428 0.46206 0.87599 1.11303 1.38610 1.46407 1.53504 2.06418 2.22110 2.38646 2.45805 2.79321 2.82207 3.66964 3.74241 3.84190 3.91589 4.02325 4.16680 4.26123 4.34390 4.37463 4.45082 4.47872 4.50832 4.66817 4.73611 4.89760 5.06091 5.09255 5.10498 5.13056 5.26559 5.35074 5.37898 5.41409 5.47464 5.57654 5.65508 5.83994 5.87394 6.00411 6.09125 6.35770 6.37486 6.63539 6.72143 6.93104 6.97090 7.35920 8.38613 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.002624 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.741236 B =10669.471697 C =12189.051074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.030 3.970 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.498 4.498 8 H 0.073 0.927 9 C 0.072 3.928 10 C -0.225 4.225 11 C -0.091 4.091 12 C 0.017 3.983 13 N -0.636 5.636 14 C 0.515 3.485 15 O -0.570 6.570 16 C -0.188 4.188 17 C -0.059 4.059 18 C 0.065 3.935 19 O -0.324 6.324 20 C 0.109 3.891 21 C -0.227 4.227 22 C -0.094 4.094 23 C -0.162 4.162 24 C -0.081 4.081 25 C -0.163 4.163 26 C -0.117 4.117 27 C -0.160 4.160 28 H 0.286 0.714 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.420 0.580 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -17.003 5.026 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.194 1.194 7 C -0.528 4.528 8 H 0.091 0.909 9 C 0.070 3.930 10 C -0.246 4.246 11 C -0.111 4.111 12 C -0.077 4.077 13 N -0.280 5.280 14 C 0.307 3.693 15 O -0.453 6.453 16 C -0.208 4.208 17 C -0.078 4.078 18 C -0.009 4.009 19 O -0.239 6.239 20 C 0.064 3.936 21 C -0.246 4.246 22 C -0.112 4.112 23 C -0.180 4.180 24 C -0.098 4.098 25 C -0.182 4.182 26 C -0.137 4.137 27 C -0.180 4.180 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.257 0.743 32 H 0.202 0.798 33 H 0.191 0.809 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.143 0.857 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.933 -16.806 5.624 19.417 hybrid contribution 0.687 1.122 -0.370 1.367 sum -7.246 -15.684 5.254 18.058 Atomic orbital electron populations 1.69861 1.08714 1.30196 1.37713 1.26744 0.95716 1.04367 0.91484 0.85087 0.79143 0.76125 0.78880 1.18341 1.18616 1.19394 1.19769 0.95307 0.91454 1.46265 0.90876 1.18010 0.92861 0.92875 0.89244 1.20883 1.03371 0.94276 1.06027 1.20404 0.94188 0.97249 0.99233 1.17266 0.95726 0.86311 1.08379 1.42847 1.51853 1.16091 1.17200 1.19524 0.80982 0.85790 0.83034 1.90700 1.48435 1.79218 1.26941 1.22844 1.03282 0.91594 1.03078 1.23545 0.93107 1.00439 0.90719 1.22311 0.89271 1.00189 0.89118 1.85912 1.49480 1.70651 1.17843 1.19325 0.95535 0.95156 0.83610 1.21485 1.00953 1.03778 0.98402 1.21263 0.99200 0.98248 0.92474 1.21441 0.95370 1.00151 1.01033 1.21377 0.98413 0.95725 0.94312 1.20758 0.99320 1.04708 0.93365 1.20525 0.99688 0.91427 1.02064 1.20941 0.98912 0.96552 1.01630 0.90328 0.88729 0.87591 0.74257 0.79846 0.80944 0.91114 0.90162 0.86652 0.84841 0.83294 0.82070 0.83713 0.85726 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.59 10.89 21.82 0.24 -44.35 16 2 C 0.03 1.53 5.29 85.24 0.45 1.98 16 3 Si 0.99 39.11 29.57 68.60 2.03 41.14 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.50 -27.52 9.03 23.39 0.21 -27.31 16 8 H 0.07 3.92 7.86 -2.91 -0.02 3.90 16 9 C 0.07 4.03 5.52 -21.27 -0.12 3.91 16 10 C -0.23 -11.84 9.74 22.48 0.22 -11.62 16 11 C -0.09 -4.36 8.57 22.14 0.19 -4.17 16 12 C 0.02 0.73 6.29 38.60 0.24 0.98 16 13 N -0.64 -20.48 5.30 -306.41 -1.62 -22.10 16 14 C 0.51 16.45 7.28 86.55 0.63 17.08 16 15 O -0.57 -23.11 10.96 -4.11 -0.05 -23.16 16 16 C -0.19 -3.82 10.01 23.42 0.23 -3.59 16 17 C -0.06 -1.18 9.94 24.53 0.24 -0.93 16 18 C 0.07 1.79 4.06 71.24 0.29 2.08 16 19 O -0.32 -8.95 10.12 -92.45 -0.94 -9.89 16 20 C 0.11 3.00 6.69 22.51 0.15 3.15 16 21 C -0.23 -6.53 9.04 22.37 0.20 -6.32 16 22 C -0.09 -2.27 10.04 22.25 0.22 -2.04 16 23 C -0.16 -3.13 10.04 22.29 0.22 -2.90 16 24 C -0.08 -1.44 10.04 22.26 0.22 -1.22 16 25 C -0.16 -3.58 9.99 22.36 0.22 -3.35 16 26 C -0.12 -5.23 9.89 22.14 0.22 -5.01 16 27 C -0.16 -8.39 8.58 22.48 0.19 -8.20 16 28 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 29 H 0.09 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.11 4.99 6.35 -2.91 -0.02 4.97 16 31 H 0.42 9.67 8.79 -92.71 -0.81 8.85 16 32 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.07 1.96 7.65 -2.39 -0.02 1.94 16 35 H 0.08 2.78 4.87 -2.38 -0.01 2.77 16 36 H 0.12 3.64 6.30 -2.91 -0.02 3.62 16 37 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.11 5.94 6.36 -2.91 -0.02 5.92 16 Total: -1.00 -70.63 359.14 4.15 -66.48 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: 0.24 Total: 39.40 kcal Atomic # 6 Polarization: -51.77 SS G_CDS: 4.25 Total: -47.52 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.39 Total: -66.45 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.98 Total: -33.05 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -70.63 4.15 -66.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492927078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.224 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds