Wall clock time and date at job start Tue Mar 31 2020 13:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86794 * 120.00112 * 2 1 4 4 H 1.48497 * 109.47046 * 269.99828 * 3 2 1 5 5 H 1.48498 * 109.47282 * 30.00242 * 3 2 1 6 6 H 1.48500 * 109.47044 * 150.00342 * 3 2 1 7 7 C 1.39919 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99818 * 191.34154 * 7 2 1 9 9 C 1.41124 * 120.00095 * 11.33672 * 7 2 1 10 10 C 1.40885 * 120.15934 * 27.83418 * 9 7 2 11 11 C 1.36357 * 119.83201 * 180.02562 * 10 9 7 12 12 C 1.39525 * 120.16621 * 0.26058 * 11 10 9 13 13 N 1.39098 * 119.83632 * 179.74210 * 12 11 10 14 14 C 1.34770 * 120.00192 * 326.00934 * 13 12 11 15 15 O 1.21620 * 120.00064 * 354.86757 * 14 13 12 16 16 C 1.47041 * 119.99989 * 174.86703 * 14 13 12 17 17 C 1.33044 * 119.99879 * 179.97438 * 16 14 13 18 18 C 1.50705 * 119.99738 * 179.97438 * 17 16 14 19 19 O 1.42904 * 109.46699 * 135.00474 * 18 17 16 20 20 C 1.35903 * 116.99725 * 179.97438 * 19 18 17 21 21 C 1.38724 * 120.05625 * 359.72739 * 20 19 18 22 22 C 1.38148 * 119.94676 * 179.74211 * 21 20 19 23 23 C 1.38269 * 120.04718 * 0.51096 * 22 21 20 24 24 C 1.38256 * 120.11648 * 359.76355 * 23 22 21 25 25 C 1.38148 * 120.05712 * 359.97438 * 24 23 22 26 26 C 1.39526 * 120.32454 * 359.48243 * 12 11 10 27 27 C 1.36358 * 120.16404 * 0.51480 * 26 12 11 28 28 H 0.96997 * 119.99450 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.08653 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.91876 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99759 * 146.01200 * 13 12 11 32 32 H 1.08001 * 119.99967 * 0.02562 * 16 14 13 33 33 H 1.08001 * 120.00154 * 0.02562 * 17 16 14 34 34 H 1.09000 * 109.46939 * 255.00501 * 18 17 16 35 35 H 1.08994 * 109.46934 * 15.00731 * 18 17 16 36 36 H 1.08006 * 120.03281 * 359.97438 * 21 20 19 37 37 H 1.08000 * 119.97742 * 180.27213 * 22 21 20 38 38 H 1.08009 * 119.93877 * 179.74218 * 23 22 21 39 39 H 1.08001 * 119.97474 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.03147 * 179.97438 * 25 24 23 41 41 H 1.07994 * 119.91503 * 180.25847 * 26 12 11 42 42 H 1.07997 * 120.08209 * 179.72300 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5403 1.4400 0.7000 7 6 2.0083 -1.2118 -0.0005 8 1 3.0724 -1.2210 0.1834 9 6 1.3233 -2.4219 -0.2413 10 6 0.1528 -2.4288 -1.0254 11 6 -0.5041 -3.6017 -1.2533 12 6 -0.0228 -4.7923 -0.7079 13 7 -0.7013 -5.9841 -0.9404 14 6 -2.0448 -5.9851 -1.0465 15 8 -2.6713 -4.9620 -0.8467 16 6 -2.7532 -7.2231 -1.4039 17 6 -4.0796 -7.2241 -1.5081 18 6 -4.8055 -8.4928 -1.8750 19 8 -5.9391 -8.6569 -1.0205 20 6 -6.7080 -9.7596 -1.2205 21 6 -6.3814 -10.6619 -2.2222 22 6 -7.1614 -11.7848 -2.4201 23 6 -8.2730 -12.0040 -1.6275 24 6 -8.6039 -11.1033 -0.6322 25 6 -7.8239 -9.9817 -0.4268 26 6 1.1387 -4.7941 0.0652 27 6 1.8062 -3.6289 0.3017 28 1 -0.4849 0.8401 0.0004 29 1 -0.2238 -1.5072 -1.4441 30 1 -1.4017 -3.6085 -1.8538 31 1 -0.2074 -6.8146 -1.0261 32 1 -2.1969 -8.1317 -1.5809 33 1 -4.6359 -6.3156 -1.3307 34 1 -5.1372 -8.4348 -2.9116 35 1 -4.1342 -9.3431 -1.7553 36 1 -5.5158 -10.4888 -2.8446 37 1 -6.9051 -12.4899 -3.1970 38 1 -8.8840 -12.8804 -1.7864 39 1 -9.4728 -11.2766 -0.0147 40 1 -8.0830 -9.2782 0.3505 41 1 1.5077 -5.7201 0.4808 42 1 2.7026 -3.6311 0.9039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492927079.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:55 Heat of formation + Delta-G solvation = -25.385852 kcal Electronic energy + Delta-G solvation = -24205.151175 eV Core-core repulsion = 20500.838936 eV Total energy + Delta-G solvation = -3704.312238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27958 -41.02098 -39.14698 -38.43455 -36.27613 -34.98532 -34.70057 -31.94435 -31.48439 -31.07828 -30.67392 -28.43733 -26.69590 -24.16602 -23.44570 -23.18430 -22.77682 -21.66794 -20.58481 -19.35650 -19.23476 -18.57336 -17.99723 -17.13481 -16.96560 -16.76795 -16.65500 -16.07667 -15.74632 -15.52479 -15.35513 -14.88273 -14.68216 -14.39926 -14.29340 -13.96374 -13.83192 -13.73093 -13.57036 -13.37518 -12.82713 -12.75079 -12.69526 -12.46325 -12.33763 -12.17047 -11.75965 -11.74060 -11.69864 -11.27900 -10.92063 -10.62363 -10.50025 -9.93340 -9.47894 -9.17450 -8.83924 -8.58502 -6.30311 0.10774 0.41183 0.50134 0.90555 1.12341 1.37926 1.49017 1.52697 2.03320 2.20527 2.30994 2.57210 2.79514 2.86572 3.60419 3.71835 3.90438 3.93086 4.01935 4.15389 4.23002 4.31222 4.33389 4.42165 4.44702 4.52073 4.57190 4.74464 4.95860 5.05595 5.10494 5.13113 5.19771 5.25936 5.34357 5.36859 5.41876 5.50133 5.62621 5.67103 5.86239 5.87877 6.06056 6.09936 6.32512 6.43579 6.66626 6.72630 6.91932 6.99433 7.39074 8.36084 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035354 B = 0.001701 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.802398 B =16452.952717 C =16926.075790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.025 3.975 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.493 4.493 8 H 0.083 0.917 9 C 0.070 3.930 10 C -0.175 4.175 11 C -0.103 4.103 12 C 0.008 3.992 13 N -0.634 5.634 14 C 0.520 3.480 15 O -0.586 6.586 16 C -0.177 4.177 17 C -0.073 4.073 18 C 0.090 3.910 19 O -0.335 6.335 20 C 0.107 3.893 21 C -0.216 4.216 22 C -0.086 4.086 23 C -0.165 4.165 24 C -0.086 4.086 25 C -0.175 4.175 26 C -0.101 4.101 27 C -0.219 4.219 28 H 0.285 0.715 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.422 0.578 32 H 0.179 0.821 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 -24.197 -5.558 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.188 4.188 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.523 4.523 8 H 0.101 0.899 9 C 0.068 3.932 10 C -0.195 4.195 11 C -0.123 4.123 12 C -0.086 4.086 13 N -0.278 5.278 14 C 0.311 3.689 15 O -0.467 6.467 16 C -0.197 4.197 17 C -0.094 4.094 18 C 0.016 3.984 19 O -0.250 6.250 20 C 0.063 3.937 21 C -0.235 4.235 22 C -0.104 4.104 23 C -0.183 4.183 24 C -0.103 4.103 25 C -0.194 4.194 26 C -0.121 4.121 27 C -0.239 4.239 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.260 0.740 32 H 0.196 0.804 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.940 -23.207 -5.286 26.629 hybrid contribution 0.385 0.990 -0.012 1.062 sum -11.554 -22.218 -5.298 25.597 Atomic orbital electron populations 1.69933 1.09206 1.30297 1.36929 1.26897 0.95548 1.04955 0.91402 0.85090 0.78955 0.75481 0.79468 1.18683 1.19674 1.17649 1.19845 0.96490 0.91578 1.44339 0.89900 1.18049 0.92084 0.93718 0.89371 1.20957 0.99473 0.96371 1.02746 1.20490 0.98637 0.93000 1.00214 1.17282 0.97709 0.86160 1.07401 1.42751 1.06046 1.09297 1.69697 1.19355 0.82336 0.89833 0.77418 1.90818 1.67636 1.36612 1.51666 1.22602 0.95259 0.97331 1.04511 1.23330 0.94854 0.98617 0.92550 1.21892 0.86187 0.95604 0.94669 1.86077 1.39280 1.41663 1.57937 1.19299 0.91887 0.86791 0.95766 1.21558 1.04158 0.97103 1.00644 1.21348 0.93921 0.96233 0.98849 1.21456 0.98752 1.01038 0.97009 1.21285 0.98935 0.92540 0.97583 1.20721 0.95618 1.00836 1.02230 1.20443 0.95367 0.98408 0.97843 1.20882 1.03672 0.92854 1.06451 0.90429 0.88296 0.89136 0.74018 0.80409 0.87494 0.88155 0.87907 0.83542 0.83312 0.83600 0.83387 0.85579 0.84503 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.97 10.80 21.82 0.24 -46.73 16 2 C 0.03 1.32 5.25 85.24 0.45 1.77 16 3 Si 0.99 39.60 29.57 68.60 2.03 41.62 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.49 -27.15 9.05 23.39 0.21 -26.94 16 8 H 0.08 4.29 7.87 -2.91 -0.02 4.27 16 9 C 0.07 3.92 5.56 -21.28 -0.12 3.80 16 10 C -0.18 -10.02 8.61 22.48 0.19 -9.83 16 11 C -0.10 -5.41 8.57 22.14 0.19 -5.22 16 12 C 0.01 0.36 6.28 38.61 0.24 0.60 16 13 N -0.63 -21.16 5.30 -306.42 -1.62 -22.78 16 14 C 0.52 18.22 7.48 86.55 0.65 18.87 16 15 O -0.59 -27.53 13.90 -4.10 -0.06 -27.58 16 16 C -0.18 -3.92 9.63 23.42 0.23 -3.70 16 17 C -0.07 -1.65 9.47 24.53 0.23 -1.42 16 18 C 0.09 1.42 5.16 71.24 0.37 1.79 16 19 O -0.33 -7.32 10.12 -92.45 -0.94 -8.25 16 20 C 0.11 2.06 6.69 22.50 0.15 2.21 16 21 C -0.22 -3.09 9.04 22.36 0.20 -2.88 16 22 C -0.09 -1.00 10.04 22.26 0.22 -0.77 16 23 C -0.16 -1.90 10.04 22.28 0.22 -1.67 16 24 C -0.09 -1.16 10.04 22.25 0.22 -0.93 16 25 C -0.18 -3.19 9.99 22.37 0.22 -2.97 16 26 C -0.10 -4.25 9.89 22.14 0.22 -4.04 16 27 C -0.22 -10.59 9.74 22.48 0.22 -10.37 16 28 H 0.29 14.60 8.30 -92.71 -0.77 13.84 16 29 H 0.10 6.01 6.15 -2.91 -0.02 5.99 16 30 H 0.09 4.84 6.43 -2.91 -0.02 4.82 16 31 H 0.42 9.61 8.79 -92.71 -0.82 8.79 16 32 H 0.18 2.08 7.93 -2.91 -0.02 2.05 16 33 H 0.11 3.11 7.49 -2.91 -0.02 3.09 16 34 H 0.10 1.20 7.65 -2.39 -0.02 1.18 16 35 H 0.10 1.03 7.42 -2.39 -0.02 1.02 16 36 H 0.15 1.41 6.30 -2.91 -0.02 1.39 16 37 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 41 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -76.60 364.22 4.21 -72.40 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.24 Total: 33.01 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 4.32 Total: -41.69 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -1.39 Total: -69.51 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.99 Total: -35.83 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.62 kcal Total: -76.60 4.21 -72.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492927079.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.009 kcal (2) G-P(sol) polarization free energy of solvation -76.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds