Wall clock time and date at job start Tue Mar 31 2020 14:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34027 * 124.50003 * 2 1 4 4 C 1.37194 * 115.15055 * 179.97438 * 3 2 1 5 5 C 1.37185 * 113.24220 * 0.02562 * 4 3 2 6 6 C 1.41231 * 125.48165 * 179.97438 * 5 4 3 7 7 O 1.21446 * 120.00238 * 359.97225 * 6 5 4 8 8 C 1.50702 * 119.99993 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47143 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47491 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99775 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00290 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99980 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46995 * 90.00087 * 13 12 10 15 15 H 1.07993 * 120.00251 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99638 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00230 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99823 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47425 * 59.99796 * 18 16 14 20 20 H 1.48504 * 109.47275 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47296 * 299.99812 * 18 16 14 22 22 C 1.46495 * 120.00245 * 359.97438 * 12 10 9 23 23 C 1.52999 * 109.47491 * 119.99668 * 22 12 10 24 24 C 1.52996 * 109.47527 * 240.00316 * 22 12 10 25 25 S 1.70611 * 124.50266 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47001 * 300.02019 * 1 2 3 28 28 H 1.09001 * 109.47163 * 60.02718 * 1 2 3 29 29 H 1.07997 * 122.42175 * 0.02562 * 3 2 1 30 30 H 1.07999 * 123.38156 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47281 * 299.99725 * 8 6 5 32 32 H 1.09002 * 109.46990 * 60.00057 * 8 6 5 33 33 H 1.09006 * 109.47131 * 300.00360 * 9 8 6 34 34 H 1.09002 * 109.47110 * 60.00156 * 9 8 6 35 35 H 1.08999 * 109.46701 * 209.99600 * 13 12 10 36 36 H 1.08999 * 109.47076 * 330.00135 * 13 12 10 37 37 H 0.96995 * 119.99914 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46879 * 0.02562 * 22 12 10 39 39 H 1.09001 * 109.46622 * 60.00378 * 23 22 12 40 40 H 1.09002 * 109.47213 * 180.02562 * 23 22 12 41 41 H 1.08997 * 109.47487 * 300.00719 * 23 22 12 42 42 H 1.09003 * 109.47310 * 59.99455 * 24 22 12 43 43 H 1.09002 * 109.47552 * 179.97438 * 24 22 12 44 44 H 1.09001 * 109.46949 * 299.99844 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2662 1.1046 0.0000 4 6 3.6199 0.8817 0.0006 5 6 3.9493 -0.4500 0.0005 6 6 5.2625 -0.9697 0.0004 7 8 6.2142 -0.2152 0.0000 8 6 5.4829 -2.4605 0.0009 9 6 6.9845 -2.7540 0.0001 10 6 7.2051 -4.2448 0.0012 11 8 6.2547 -4.9984 0.0030 12 7 8.4582 -4.7407 0.0002 13 6 8.6725 -6.1900 0.0007 14 6 8.7447 -6.6876 -1.4199 15 1 8.6408 -5.9938 -2.2410 16 6 8.9422 -8.0287 -1.6714 17 7 9.0682 -8.8737 -0.6714 18 14 9.0309 -8.6457 -3.4323 19 1 10.1573 -7.9794 -4.1342 20 1 9.2482 -10.1147 -3.4318 21 1 7.7582 -8.3334 -4.1309 22 6 9.6062 -3.8305 -0.0025 23 6 10.4555 -4.0771 1.2460 24 6 10.4523 -4.0804 -1.2524 25 16 2.4734 -1.4060 -0.0006 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8898 28 1 -0.3633 0.5134 -0.8902 29 1 1.8428 2.0981 0.0004 30 1 4.3527 1.6750 0.0002 31 1 5.0280 -2.8948 0.8911 32 1 5.0276 -2.8954 -0.8889 33 1 7.4392 -2.3197 -0.8903 34 1 7.4402 -2.3191 0.8897 35 1 9.6066 -6.4189 0.5137 36 1 7.8458 -6.6793 0.5156 37 1 9.2075 -9.8171 -0.8483 38 1 9.2524 -2.7995 -0.0029 39 1 10.8093 -5.1081 1.2469 40 1 11.3094 -3.3995 1.2442 41 1 9.8528 -3.8991 2.1366 42 1 9.8472 -3.9047 -2.1419 43 1 11.3062 -3.4029 -1.2547 44 1 10.8061 -5.1114 -1.2516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523284023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:17 Heat of formation + Delta-G solvation = -55.260315 kcal Electronic energy + Delta-G solvation = -24653.923992 eV Core-core repulsion = 21083.760251 eV Total energy + Delta-G solvation = -3570.163741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00328 -39.02734 -37.82005 -35.95130 -33.05571 -32.64674 -32.23492 -30.77332 -28.73104 -27.36213 -26.66637 -25.16923 -23.70781 -22.56119 -21.31797 -20.64892 -19.05895 -17.91197 -17.49967 -16.44344 -16.41755 -16.10132 -15.78003 -15.05131 -14.65489 -14.58800 -14.32116 -14.15699 -14.05153 -13.48502 -13.41651 -13.11214 -12.95729 -12.57975 -12.35708 -12.27635 -12.06921 -12.04252 -11.86956 -11.60208 -11.50582 -11.14070 -11.06607 -11.01570 -10.85864 -10.78611 -10.51383 -10.30946 -9.98865 -9.86947 -9.51637 -8.92806 -8.86321 -8.83979 -8.38389 -7.59950 -5.99976 -4.03073 0.05647 1.23535 1.64616 1.94161 2.78305 3.33763 3.38161 3.39906 3.49061 3.80491 4.22789 4.38982 4.48492 4.78819 4.87544 5.02494 5.07699 5.17006 5.22996 5.24148 5.33807 5.35548 5.41076 5.49611 5.63004 5.70419 5.74478 5.78134 5.96719 6.01315 6.05373 6.08237 6.11358 6.22519 6.34188 6.42438 6.65937 7.01304 7.16315 7.43135 7.51511 7.62294 7.97093 8.29808 8.50283 8.95305 9.14654 9.60847 11.08170 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.002840 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.880736 B = 9857.854580 C =10881.491050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.196 4.196 3 C -0.168 4.168 4 C -0.043 4.043 5 C -0.308 4.308 6 C 0.424 3.576 7 O -0.455 6.455 8 C -0.153 4.153 9 C -0.129 4.129 10 C 0.504 3.496 11 O -0.546 6.546 12 N -0.592 5.592 13 C 0.246 3.754 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.131 3.869 23 C -0.161 4.161 24 C -0.156 4.156 25 S 0.243 5.757 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.034 0.966 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 19.675 3.028 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.316 4.316 3 C -0.198 4.198 4 C -0.077 4.077 5 C -0.426 4.426 6 C 0.303 3.697 7 O -0.333 6.333 8 C -0.191 4.191 9 C -0.169 4.169 10 C 0.291 3.709 11 O -0.424 6.424 12 N -0.324 5.324 13 C 0.126 3.874 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.026 3.974 23 C -0.219 4.219 24 C -0.214 4.214 25 S 0.512 5.488 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.943 17.865 3.076 21.708 hybrid contribution 0.350 1.176 -1.032 1.603 sum -11.593 19.041 2.044 22.386 Atomic orbital electron populations 1.20421 0.87379 1.03392 1.03391 1.24560 1.01869 0.98673 1.06521 1.19931 0.92794 0.99623 1.07446 1.20956 0.96228 0.95387 0.95080 1.24176 0.99671 0.98177 1.20614 1.20213 0.86170 0.91692 0.71644 1.90573 1.43515 1.61841 1.37362 1.21817 0.98371 0.92848 1.06068 1.21461 0.95823 0.94996 1.04662 1.20281 0.83528 0.89677 0.77404 1.90657 1.40739 1.60458 1.50591 1.48324 1.03983 1.09346 1.70714 1.19231 0.97584 0.73124 0.97412 1.21406 1.49108 0.92847 0.92313 0.92462 1.24923 0.95434 0.96675 0.97145 1.69922 1.49715 1.03282 1.30654 0.86618 0.78561 0.77572 0.85010 1.20297 1.21288 1.20262 1.21027 0.87523 0.93231 0.95590 1.22152 0.99453 1.02984 0.97351 1.22133 0.98713 1.03569 0.97028 1.83399 0.93541 1.06047 1.65795 0.91054 0.90154 0.90148 0.84019 0.83111 0.87660 0.87555 0.88909 0.89061 0.94819 0.94095 0.92781 0.90451 0.91354 0.92279 0.92952 0.92791 0.93275 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.33 36.01 0.37 -0.10 16 2 C -0.20 -1.61 6.28 -35.79 -0.22 -1.84 16 3 C -0.17 -1.42 9.99 -41.44 -0.41 -1.83 16 4 C -0.04 -0.44 9.95 -40.34 -0.40 -0.84 16 5 C -0.31 -3.58 6.23 -38.83 -0.24 -3.82 16 6 C 0.42 5.70 6.93 -33.17 -0.23 5.47 16 7 O -0.45 -7.04 16.36 5.41 0.09 -6.95 16 8 C -0.15 -2.17 4.28 -27.88 -0.12 -2.29 16 9 C -0.13 -2.04 3.30 -27.88 -0.09 -2.13 16 10 C 0.50 10.50 7.67 -10.99 -0.08 10.41 16 11 O -0.55 -13.42 15.56 5.55 0.09 -13.33 16 12 N -0.59 -12.59 2.39 -167.47 -0.40 -12.99 16 13 C 0.25 6.36 4.60 -5.19 -0.02 6.34 16 14 C -0.52 -14.44 7.83 -34.44 -0.27 -14.71 16 15 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 C 0.13 2.22 3.17 -67.94 -0.22 2.01 16 23 C -0.16 -2.47 9.17 37.16 0.34 -2.12 16 24 C -0.16 -2.68 8.47 37.16 0.31 -2.37 16 25 S 0.24 2.35 22.35 -107.50 -2.40 -0.06 16 26 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.15 1.43 8.02 -52.49 -0.42 1.01 16 31 H 0.11 1.45 8.10 -51.93 -0.42 1.03 16 32 H 0.11 1.52 8.10 -51.93 -0.42 1.10 16 33 H 0.09 1.41 7.74 -51.93 -0.40 1.01 16 34 H 0.09 1.32 7.75 -51.93 -0.40 0.92 16 35 H 0.03 0.88 6.43 -51.93 -0.33 0.55 16 36 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.14 5.77 -51.93 -0.30 0.84 16 39 H 0.07 1.17 6.66 -51.93 -0.35 0.83 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -33.35 378.32 -9.30 -42.65 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.71 Total: 0.17 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.39 Total: -6.22 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.34 Total: -38.83 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.29 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.40 Total: -0.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.35 -9.30 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523284023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.608 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds