Wall clock time and date at job start Tue Mar 31 2020 13:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99458 * 2 1 4 4 H 1.48500 * 109.46674 * 239.99855 * 3 2 1 5 5 H 1.48497 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46802 * 120.00231 * 3 2 1 7 7 C 1.37871 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00004 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99755 * 89.99998 * 10 9 7 12 12 C 1.50703 * 109.47289 * 270.00096 * 11 10 9 13 13 C 1.34508 * 125.78448 * 90.00098 * 12 11 10 14 14 C 1.41394 * 106.83701 * 179.97438 * 13 12 11 15 15 C 1.34513 * 106.83758 * 359.97438 * 14 13 12 16 16 O 1.34295 * 125.78633 * 269.69055 * 12 11 10 17 17 C 1.34774 * 120.00377 * 270.00187 * 10 9 7 18 18 O 1.21289 * 120.00200 * 179.97438 * 17 10 9 19 19 C 1.50696 * 120.00038 * 0.02562 * 17 10 9 20 20 C 1.52994 * 109.47431 * 179.97438 * 19 17 10 21 21 C 1.52585 * 109.22912 * 296.23837 * 20 19 17 22 22 C 1.53099 * 109.95588 * 169.00169 * 21 20 19 23 23 S 1.81747 * 108.84191 * 63.02447 * 22 21 20 24 24 C 1.81748 * 102.22112 * 306.73236 * 23 22 21 25 25 C 1.52582 * 109.22957 * 175.00007 * 20 19 17 26 26 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46821 * 60.00286 * 9 7 2 28 28 H 1.08995 * 109.47308 * 299.99902 * 9 7 2 29 29 H 1.09001 * 109.47060 * 30.00546 * 11 10 9 30 30 H 1.09004 * 109.47073 * 150.00035 * 11 10 9 31 31 H 1.07995 * 126.58620 * 0.03388 * 13 12 11 32 32 H 1.07997 * 126.57684 * 179.97438 * 14 13 12 33 33 H 1.07998 * 125.78636 * 180.02562 * 15 14 13 34 34 H 1.09003 * 109.47424 * 300.00151 * 19 17 10 35 35 H 1.09003 * 109.47504 * 60.00089 * 19 17 10 36 36 H 1.09004 * 109.22193 * 55.59599 * 20 19 17 37 37 H 1.09002 * 109.38777 * 289.15017 * 21 20 19 38 38 H 1.08994 * 109.38806 * 48.85230 * 21 20 19 39 39 H 1.08997 * 109.57725 * 303.21173 * 22 21 20 40 40 H 1.09003 * 109.56872 * 182.83408 * 22 21 20 41 41 H 1.08993 * 109.57288 * 293.45772 * 24 23 22 42 42 H 1.09004 * 109.57200 * 173.07096 * 24 23 22 43 43 H 1.09003 * 109.38588 * 311.14914 * 25 20 19 44 44 H 1.08996 * 109.39384 * 70.94821 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.6801 -4.1687 1.2702 12 6 3.9236 -3.4361 1.7040 13 6 3.9588 -2.3352 2.4761 14 6 5.3205 -1.9877 2.6319 15 6 6.0358 -2.8974 1.9461 16 8 5.1846 -3.7750 1.3900 17 6 2.6403 -4.1253 -1.1658 18 8 3.4288 -5.0469 -1.1659 19 6 2.1501 -3.5529 -2.4708 20 6 2.7958 -4.3087 -3.6338 21 6 4.3048 -4.0851 -3.6025 22 6 4.9951 -5.0409 -4.5791 23 16 4.4349 -4.6619 -6.2661 24 6 2.6267 -4.7305 -6.0956 25 6 2.2031 -3.8096 -4.9482 26 1 -0.4851 0.8400 -0.0004 27 1 0.6242 -2.5575 -0.8880 28 1 0.6248 -2.5563 0.8919 29 1 1.9073 -4.0546 2.0303 30 1 2.9085 -5.2266 1.1401 31 1 3.1101 -1.8169 2.8971 32 1 5.7113 -1.1523 3.1937 33 1 7.1121 -2.9205 1.8605 34 1 1.0663 -3.6545 -2.5279 35 1 2.4197 -2.4983 -2.5291 36 1 2.5892 -5.3738 -3.5284 37 1 4.5241 -3.0560 -3.8873 38 1 4.6767 -4.2670 -2.5942 39 1 4.7337 -6.0693 -4.3299 40 1 6.0754 -4.9109 -4.5151 41 1 2.3192 -5.7528 -5.8759 42 1 2.1597 -4.3977 -7.0225 43 1 1.1156 -3.8002 -4.8744 44 1 2.5610 -2.7993 -5.1461 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531627693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:14 Heat of formation + Delta-G solvation = -36.722213 kcal Electronic energy + Delta-G solvation = -26172.408374 eV Core-core repulsion = 22603.048505 eV Total energy + Delta-G solvation = -3569.359868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.99336 -39.50111 -36.94639 -35.14359 -32.75137 -32.38983 -31.36569 -30.98472 -29.56189 -27.38133 -25.88219 -24.03629 -22.94003 -22.90303 -21.17800 -20.41116 -19.88546 -18.38158 -17.05326 -16.84727 -16.63687 -16.21711 -15.60554 -15.12239 -14.86324 -14.51282 -14.43876 -14.11106 -13.91345 -13.76947 -13.36482 -12.89998 -12.65046 -12.57236 -12.39200 -12.28490 -12.17149 -11.96211 -11.59975 -11.44509 -11.30674 -11.17454 -11.08741 -10.96646 -10.70053 -10.49167 -10.24670 -10.11799 -9.84981 -9.60968 -9.32765 -9.04175 -8.59671 -8.07333 -7.79240 -7.61936 -6.21839 -4.27431 1.87227 2.20141 2.61269 3.09223 3.22306 3.27238 3.27563 3.32480 3.61831 3.95156 4.31710 4.76547 4.84920 4.93051 5.11915 5.12725 5.19920 5.25396 5.33714 5.42287 5.52492 5.54580 5.64660 5.73128 5.78031 5.83385 5.89624 5.93732 6.02255 6.12341 6.22723 6.28483 6.31798 6.50586 6.55735 6.58337 6.60467 6.69593 7.04181 7.08857 7.40730 7.69413 7.74138 8.01047 8.21449 8.75977 8.92767 9.40387 10.85225 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.004751 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.303627 B = 5892.609032 C = 7198.222879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.594 5.594 11 C 0.200 3.800 12 C -0.016 4.016 13 C -0.179 4.179 14 C -0.216 4.216 15 C -0.057 4.057 16 O -0.170 6.170 17 C 0.519 3.481 18 O -0.564 6.564 19 C -0.128 4.128 20 C -0.076 4.076 21 C -0.122 4.122 22 C -0.067 4.067 23 S -0.291 6.291 24 C -0.073 4.073 25 C -0.119 4.119 26 H 0.265 0.735 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.193 0.807 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 -7.337 -3.293 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.117 3.883 10 N -0.325 5.325 11 C 0.076 3.924 12 C -0.068 4.068 13 C -0.199 4.199 14 C -0.235 4.235 15 C -0.125 4.125 16 O -0.066 6.066 17 C 0.308 3.692 18 O -0.445 6.445 19 C -0.168 4.168 20 C -0.095 4.095 21 C -0.160 4.160 22 C -0.215 4.215 23 S -0.066 6.066 24 C -0.222 4.222 25 C -0.158 4.158 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.210 0.790 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.578 -7.726 -4.389 10.491 hybrid contribution -0.235 1.339 1.273 1.862 sum 5.343 -6.387 -3.116 8.891 Atomic orbital electron populations 1.69898 1.05934 1.27365 1.49971 1.24880 0.94739 0.99083 0.94844 0.86653 0.79641 0.82885 0.78962 1.20159 1.21238 1.20060 1.21417 0.93616 0.90144 1.51588 0.92004 1.19517 0.87272 0.82728 0.98784 1.48358 1.44942 1.35467 1.03697 1.19621 0.88951 0.96605 0.87196 1.22907 0.84120 0.99197 1.00560 1.21573 0.97274 0.97613 1.03477 1.21779 0.93943 1.02196 1.05614 1.23847 0.95597 0.92502 1.00587 1.84052 1.15922 1.46878 1.59724 1.20563 0.80526 0.82172 0.85890 1.90578 1.35627 1.30485 1.87822 1.21655 1.01538 1.02440 0.91158 1.20860 0.95048 1.00367 0.93219 1.21889 0.94605 0.98662 1.00877 1.23417 1.03098 1.02674 0.92334 1.86689 1.07544 1.94157 1.18181 1.23396 0.93165 1.03075 1.02528 1.21800 1.01269 0.99569 0.93143 0.92519 0.94105 0.94615 0.87972 0.89550 0.83425 0.84232 0.79032 0.89106 0.87633 0.90870 0.91410 0.88426 0.89969 0.88345 0.90076 0.88125 0.90579 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 13.29 55.43 0.74 -22.87 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.53 -12.95 9.04 -34.44 -0.31 -13.26 16 8 H 0.06 1.60 7.65 -52.48 -0.40 1.20 16 9 C 0.24 5.19 5.01 -5.19 -0.03 5.16 16 10 N -0.59 -11.65 2.44 -176.43 -0.43 -12.08 16 11 C 0.20 3.56 5.98 -5.19 -0.03 3.53 16 12 C -0.02 -0.31 6.90 -35.63 -0.25 -0.56 16 13 C -0.18 -3.32 10.40 -39.70 -0.41 -3.74 16 14 C -0.22 -3.59 10.91 -39.70 -0.43 -4.03 16 15 C -0.06 -0.91 12.09 29.42 0.36 -0.55 16 16 O -0.17 -3.23 10.65 5.72 0.06 -3.16 16 17 C 0.52 9.99 7.28 -10.99 -0.08 9.91 16 18 O -0.56 -11.59 13.52 5.55 0.08 -11.52 16 19 C -0.13 -2.15 3.70 -27.89 -0.10 -2.26 16 20 C -0.08 -1.10 1.60 -91.05 -0.15 -1.25 16 21 C -0.12 -1.84 4.83 -26.89 -0.13 -1.97 16 22 C -0.07 -0.90 6.45 37.21 0.24 -0.66 16 23 S -0.29 -3.87 22.33 -107.50 -2.40 -6.27 16 24 C -0.07 -0.84 6.45 37.21 0.24 -0.60 16 25 C -0.12 -1.48 5.05 -26.89 -0.14 -1.61 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.04 0.92 6.44 -51.93 -0.33 0.58 16 28 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 29 H 0.10 1.60 7.89 -51.93 -0.41 1.19 16 30 H 0.09 1.48 7.42 -51.93 -0.39 1.10 16 31 H 0.15 2.75 8.06 -52.49 -0.42 2.32 16 32 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.19 2.24 8.06 -52.49 -0.42 1.81 16 34 H 0.09 1.44 7.35 -51.93 -0.38 1.06 16 35 H 0.11 1.95 8.00 -51.93 -0.42 1.54 16 36 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 37 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 38 H 0.10 1.73 5.67 -51.93 -0.29 1.44 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 44 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -28.20 369.67 -9.52 -37.72 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.79 Total: 7.60 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.32 Total: -10.27 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.31 Total: -34.95 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.14 Total: -14.68 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.40 Total: -6.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.20 -9.52 -37.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531627693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.996 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds