Wall clock time and date at job start Tue Mar 31 2020 14:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34904 * 116.99632 * 2 1 4 4 O 1.21629 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.46393 * 119.99683 * 179.97438 * 3 2 1 6 6 C 1.36753 * 125.45857 * 179.97438 * 5 3 2 7 7 C 1.37413 * 113.29087 * 179.97438 * 6 5 3 8 8 C 1.50700 * 122.44897 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.46944 * 260.02062 * 8 7 6 10 10 C 1.46849 * 110.99638 * 45.79297 * 9 8 7 11 11 C 1.53037 * 109.51906 * 185.83683 * 10 9 8 12 12 C 1.53114 * 109.28146 * 300.81956 * 11 10 9 13 13 C 1.50700 * 109.57888 * 177.59249 * 12 11 10 14 14 H 1.07995 * 119.99997 * 240.28770 * 13 12 11 15 15 C 1.37877 * 119.99674 * 60.28098 * 13 12 11 16 16 N 1.31515 * 120.00538 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99776 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46977 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47294 * 120.00236 * 17 15 13 20 20 H 1.48505 * 109.46930 * 240.00204 * 17 15 13 21 21 C 1.53120 * 109.16071 * 57.65266 * 12 11 10 22 22 C 1.46843 * 110.99794 * 169.99564 * 9 8 7 23 23 C 1.33865 * 115.10565 * 359.97438 * 7 6 5 24 24 C 1.50703 * 124.51689 * 179.97438 * 23 7 6 25 25 S 1.70617 * 110.96509 * 0.24503 * 23 7 6 26 26 H 1.08998 * 109.47466 * 299.99814 * 1 2 3 27 27 H 1.08996 * 109.47620 * 60.00550 * 1 2 3 28 28 H 1.09004 * 109.46473 * 179.97438 * 1 2 3 29 29 H 1.08003 * 123.35960 * 0.03394 * 6 5 3 30 30 H 1.08996 * 109.46998 * 20.01935 * 8 7 6 31 31 H 1.09000 * 109.47122 * 140.02316 * 8 7 6 32 32 H 1.09004 * 109.46147 * 305.85037 * 10 9 8 33 33 H 1.08997 * 109.46689 * 65.82346 * 10 9 8 34 34 H 1.09002 * 109.50185 * 180.87580 * 11 10 9 35 35 H 1.09008 * 109.53521 * 60.78061 * 11 10 9 36 36 H 1.09006 * 109.51886 * 297.74931 * 12 11 10 37 37 H 0.97001 * 120.00411 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.50350 * 182.40431 * 21 12 11 39 39 H 1.09001 * 109.53222 * 62.31030 * 21 12 11 40 40 H 1.09000 * 109.46464 * 294.18206 * 22 9 8 41 41 H 1.09005 * 109.45837 * 54.15792 * 22 9 8 42 42 H 1.09002 * 109.47152 * 90.00127 * 24 23 7 43 43 H 1.09001 * 109.46980 * 330.00227 * 24 23 7 44 44 H 1.09004 * 109.47113 * 210.00208 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4018 2.2221 -0.0005 5 6 3.5262 1.2787 0.0006 6 6 4.2602 2.4326 0.0001 7 6 5.6168 2.2137 0.0014 8 6 6.6176 3.3403 0.0006 9 7 7.1232 3.5451 -1.3634 10 6 6.0238 3.5502 -2.3369 11 6 6.5963 3.6193 -3.7544 12 6 7.4366 4.8911 -3.8989 13 6 8.0520 4.9363 -5.2738 14 1 9.1261 4.9578 -5.3842 15 6 7.2437 4.9501 -6.3906 16 7 5.9357 4.9244 -6.2562 17 14 8.0065 5.0055 -8.0950 18 1 9.4865 5.0272 -7.9744 19 1 7.5905 3.8044 -8.8627 20 1 7.5490 6.2283 -8.8026 21 6 8.5448 4.8840 -2.8422 22 6 7.9158 4.7782 -1.4511 23 6 5.9844 0.9265 0.0034 24 6 7.4129 0.4463 0.0045 25 16 4.6200 -0.0980 -0.0031 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.8178 3.4178 -0.0002 30 1 6.1368 4.2536 0.3509 31 1 7.4472 3.0898 0.6618 32 1 5.4367 2.6385 -2.2263 33 1 5.3861 4.4164 -2.1601 34 1 5.7797 3.6387 -4.4761 35 1 7.2230 2.7463 -3.9374 36 1 6.8017 5.7654 -3.7550 37 1 5.3670 4.9345 -7.0420 38 1 9.1203 5.8070 -2.9122 39 1 9.2028 4.0313 -3.0099 40 1 7.2692 5.6386 -1.2785 41 1 8.7029 4.7584 -0.6973 42 1 7.7569 0.3320 1.0325 43 1 8.0409 1.1735 -0.5102 44 1 7.4739 -0.5138 -0.5080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542879526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:37 Heat of formation + Delta-G solvation = -58.729170 kcal Electronic energy + Delta-G solvation = -25312.903690 eV Core-core repulsion = 21742.589528 eV Total energy + Delta-G solvation = -3570.314162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44379 -39.35014 -37.36824 -36.44390 -33.78674 -32.31380 -31.24414 -29.76857 -28.87142 -27.66494 -26.07124 -24.41378 -23.71799 -22.13423 -21.68812 -20.55836 -18.69915 -18.50162 -18.41103 -16.83072 -16.53196 -16.40083 -16.16977 -15.39095 -14.70528 -14.46343 -14.14486 -13.90814 -13.84405 -13.44144 -13.36663 -13.05662 -12.83957 -12.54655 -12.39857 -12.32445 -12.06484 -11.98109 -11.73657 -11.46319 -11.32050 -10.99939 -10.94580 -10.87060 -10.71424 -10.70731 -10.38689 -10.18551 -9.94793 -9.40772 -8.94806 -8.73681 -8.68324 -8.46759 -8.26459 -7.72854 -5.93976 -3.99456 0.32402 1.37761 1.82661 2.11211 2.50193 2.85150 3.32115 3.40289 3.44030 4.47240 4.52646 4.70477 4.77828 4.89443 4.97869 5.06014 5.09985 5.29770 5.36156 5.46786 5.50068 5.57945 5.68285 5.73506 5.78771 5.91708 6.06161 6.11677 6.13972 6.22690 6.27647 6.35219 6.41890 6.65013 6.66314 6.87811 7.09685 7.17969 7.46835 7.56188 7.63139 7.69816 7.85664 8.08088 8.19922 8.51577 9.04631 9.64954 11.12083 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.003430 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.792471 B = 8160.626651 C = 9212.723375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.543 3.457 4 O -0.501 6.501 5 C -0.278 4.278 6 C -0.019 4.019 7 C -0.123 4.123 8 C 0.113 3.887 9 N -0.528 5.528 10 C 0.058 3.942 11 C -0.102 4.102 12 C 0.048 3.952 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.105 4.105 22 C 0.060 3.940 23 C -0.161 4.161 24 C -0.090 4.090 25 S 0.230 5.770 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.152 0.848 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.020 0.980 37 H 0.258 0.742 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.025 0.975 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 -11.456 16.617 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.387 3.613 4 O -0.390 6.390 5 C -0.395 4.395 6 C -0.054 4.054 7 C -0.134 4.134 8 C -0.017 4.017 9 N -0.254 5.254 10 C -0.069 4.069 11 C -0.141 4.141 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.143 4.143 22 C -0.068 4.068 23 C -0.282 4.282 24 C -0.149 4.149 25 S 0.500 5.500 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.169 0.831 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.741 -13.162 16.381 21.541 hybrid contribution -0.361 2.390 -0.841 2.560 sum -5.102 -10.771 15.539 19.584 Atomic orbital electron populations 1.23281 0.75685 1.03762 1.02789 1.86575 1.23795 1.32333 1.84812 1.19647 0.87152 0.81657 0.72799 1.90898 1.65972 1.35841 1.46304 1.23209 0.93640 0.98722 1.23976 1.20682 0.92225 0.98466 0.93981 1.18517 0.93683 0.94806 1.06426 1.20753 0.94925 0.93535 0.92490 1.62178 1.23710 1.36924 1.02546 1.22295 0.91502 0.98705 0.94414 1.21643 1.01348 0.99191 0.91882 1.18686 0.92036 0.93867 0.92505 1.21240 0.92842 1.49908 0.90783 0.92739 1.24972 0.94819 0.95264 0.98975 1.69891 1.02835 1.51103 1.29207 0.86599 0.79473 0.77493 0.84796 1.19840 1.21111 1.21166 1.21666 0.99465 1.00182 0.92990 1.22134 0.96043 0.89294 0.99293 1.24268 1.01937 0.97274 1.04690 1.20499 0.89278 1.02420 1.02691 1.83036 0.92601 1.06768 1.67637 0.91803 0.91620 0.87911 0.83089 0.94412 0.90200 0.92493 0.96112 0.89125 0.93959 0.96227 0.93179 0.93200 0.92490 0.95705 0.92378 0.90690 0.88191 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.36 -4.34 10.42 -41.05 -0.43 -4.77 16 3 C 0.54 7.84 7.92 34.01 0.27 8.11 16 4 O -0.50 -8.39 16.64 -19.36 -0.32 -8.71 16 5 C -0.28 -3.84 6.45 -36.84 -0.24 -4.08 16 6 C -0.02 -0.27 8.82 -40.42 -0.36 -0.63 16 7 C -0.12 -1.66 3.55 -106.46 -0.38 -2.04 16 8 C 0.11 1.55 4.76 -4.97 -0.02 1.53 16 9 N -0.53 -8.96 4.59 -236.11 -1.08 -10.05 16 10 C 0.06 1.15 4.86 -3.83 -0.02 1.13 16 11 C -0.10 -2.44 5.12 -26.65 -0.14 -2.57 16 12 C 0.05 1.18 2.16 -91.65 -0.20 0.99 16 13 C -0.51 -14.03 8.57 -34.44 -0.29 -14.33 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -25.73 11.37 55.43 0.63 -25.10 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.11 -2.17 5.32 -26.65 -0.14 -2.31 16 22 C 0.06 1.04 5.42 -3.84 -0.02 1.02 16 23 C -0.16 -1.96 6.28 -35.84 -0.22 -2.18 16 24 C -0.09 -0.92 9.77 36.01 0.35 -0.56 16 25 S 0.23 2.62 22.87 -107.50 -2.46 0.16 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.15 2.17 8.06 -52.48 -0.42 1.74 16 30 H 0.04 0.52 8.02 -51.93 -0.42 0.10 16 31 H 0.08 0.96 7.72 -51.93 -0.40 0.56 16 32 H 0.06 1.10 6.03 -51.93 -0.31 0.79 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 2.44 6.18 -51.93 -0.32 2.12 16 35 H 0.04 1.03 8.14 -51.92 -0.42 0.60 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 1.17 7.25 -51.93 -0.38 0.80 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -30.73 368.60 -10.43 -41.16 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.86 Total: -1.74 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -0.44 Total: -12.93 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.45 Total: -35.14 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.75 Total: -13.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.46 Total: 0.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.73 -10.43 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542879526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.572 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds