Wall clock time and date at job start Tue Mar 31 2020 14:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34904 * 116.99632 * 2 1 4 4 O 1.21629 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.46393 * 119.99683 * 179.97438 * 3 2 1 6 6 C 1.36753 * 125.45857 * 179.97438 * 5 3 2 7 7 C 1.37413 * 113.29087 * 179.97438 * 6 5 3 8 8 C 1.50700 * 122.44897 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.46944 * 260.02062 * 8 7 6 10 10 C 1.46849 * 110.99638 * 45.79297 * 9 8 7 11 11 C 1.53037 * 109.51906 * 185.83683 * 10 9 8 12 12 C 1.53114 * 109.28146 * 300.81956 * 11 10 9 13 13 C 1.50700 * 109.57888 * 177.59249 * 12 11 10 14 14 H 1.07995 * 119.99997 * 240.28770 * 13 12 11 15 15 C 1.37877 * 119.99674 * 60.28098 * 13 12 11 16 16 N 1.31515 * 120.00538 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99776 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46977 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47294 * 120.00236 * 17 15 13 20 20 H 1.48505 * 109.46930 * 240.00204 * 17 15 13 21 21 C 1.53120 * 109.16071 * 57.65266 * 12 11 10 22 22 C 1.46843 * 110.99794 * 169.99564 * 9 8 7 23 23 C 1.33865 * 115.10565 * 359.97438 * 7 6 5 24 24 C 1.50703 * 124.51689 * 179.97438 * 23 7 6 25 25 S 1.70617 * 110.96509 * 0.24503 * 23 7 6 26 26 H 1.08998 * 109.47466 * 299.99814 * 1 2 3 27 27 H 1.08996 * 109.47620 * 60.00550 * 1 2 3 28 28 H 1.09004 * 109.46473 * 179.97438 * 1 2 3 29 29 H 1.08003 * 123.35960 * 0.03394 * 6 5 3 30 30 H 1.08996 * 109.46998 * 20.01935 * 8 7 6 31 31 H 1.09000 * 109.47122 * 140.02316 * 8 7 6 32 32 H 1.09004 * 109.46147 * 305.85037 * 10 9 8 33 33 H 1.08997 * 109.46689 * 65.82346 * 10 9 8 34 34 H 1.09002 * 109.50185 * 180.87580 * 11 10 9 35 35 H 1.09008 * 109.53521 * 60.78061 * 11 10 9 36 36 H 1.09006 * 109.51886 * 297.74931 * 12 11 10 37 37 H 0.97001 * 120.00411 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.50350 * 182.40431 * 21 12 11 39 39 H 1.09001 * 109.53222 * 62.31030 * 21 12 11 40 40 H 1.09000 * 109.46464 * 294.18206 * 22 9 8 41 41 H 1.09005 * 109.45837 * 54.15792 * 22 9 8 42 42 H 1.09002 * 109.47152 * 90.00127 * 24 23 7 43 43 H 1.09001 * 109.46980 * 330.00227 * 24 23 7 44 44 H 1.09004 * 109.47113 * 210.00208 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4018 2.2221 -0.0005 5 6 3.5262 1.2787 0.0006 6 6 4.2602 2.4326 0.0001 7 6 5.6168 2.2137 0.0014 8 6 6.6176 3.3403 0.0006 9 7 7.1232 3.5451 -1.3634 10 6 6.0238 3.5502 -2.3369 11 6 6.5963 3.6193 -3.7544 12 6 7.4366 4.8911 -3.8989 13 6 8.0520 4.9363 -5.2738 14 1 9.1261 4.9578 -5.3842 15 6 7.2437 4.9501 -6.3906 16 7 5.9357 4.9244 -6.2562 17 14 8.0065 5.0055 -8.0950 18 1 9.4865 5.0272 -7.9744 19 1 7.5905 3.8044 -8.8627 20 1 7.5490 6.2283 -8.8026 21 6 8.5448 4.8840 -2.8422 22 6 7.9158 4.7782 -1.4511 23 6 5.9844 0.9265 0.0034 24 6 7.4129 0.4463 0.0045 25 16 4.6200 -0.0980 -0.0031 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.8178 3.4178 -0.0002 30 1 6.1368 4.2536 0.3509 31 1 7.4472 3.0898 0.6618 32 1 5.4367 2.6385 -2.2263 33 1 5.3861 4.4164 -2.1601 34 1 5.7797 3.6387 -4.4761 35 1 7.2230 2.7463 -3.9374 36 1 6.8017 5.7654 -3.7550 37 1 5.3670 4.9345 -7.0420 38 1 9.1203 5.8070 -2.9122 39 1 9.2028 4.0313 -3.0099 40 1 7.2692 5.6386 -1.2785 41 1 8.7029 4.7584 -0.6973 42 1 7.7569 0.3320 1.0325 43 1 8.0409 1.1735 -0.5102 44 1 7.4739 -0.5138 -0.5080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542879526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:36 Heat of formation + Delta-G solvation = -75.941249 kcal Electronic energy + Delta-G solvation = -25313.650062 eV Core-core repulsion = 21742.589528 eV Total energy + Delta-G solvation = -3571.060533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49411 -40.56205 -38.75363 -37.51909 -35.56590 -33.53128 -32.83043 -31.44449 -29.87640 -28.85912 -27.40943 -25.92226 -24.72004 -23.74961 -23.26885 -21.76262 -20.30417 -19.68607 -19.41927 -18.43392 -17.83461 -17.51708 -17.27048 -16.89679 -16.32700 -15.84894 -15.42201 -15.03600 -14.96954 -14.77752 -14.47644 -14.36933 -14.30511 -14.05120 -13.83627 -13.33644 -13.16914 -13.12482 -12.92276 -12.83242 -12.71159 -12.62573 -12.48342 -12.25770 -12.01730 -11.91350 -11.87292 -11.83858 -11.70516 -11.33576 -10.78460 -10.63337 -10.37303 -9.71223 -9.49487 -9.10865 -8.07019 -6.20753 -0.70044 0.41306 0.84596 1.05831 1.39750 1.41576 1.53040 1.57652 1.77825 2.44112 3.16908 3.21027 3.75842 3.79856 4.02680 4.10720 4.25644 4.25889 4.28559 4.32429 4.37292 4.51148 4.58069 4.62942 4.69453 4.73902 4.80355 4.82656 4.86311 4.91384 5.00892 5.09460 5.12834 5.17974 5.26536 5.36628 5.37396 5.41225 5.59313 5.63889 6.01527 6.03893 6.28210 6.35321 6.41649 6.51568 6.92373 7.47461 8.97507 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.003430 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.792471 B = 8160.626651 C = 9212.723375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.542 3.458 4 O -0.536 6.536 5 C -0.306 4.306 6 C -0.030 4.030 7 C -0.142 4.142 8 C 0.116 3.884 9 N -0.526 5.526 10 C 0.077 3.923 11 C -0.092 4.092 12 C 0.043 3.957 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.920 5.920 17 Si 0.953 3.047 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.283 1.283 21 C -0.098 4.098 22 C 0.065 3.935 23 C -0.157 4.157 24 C -0.091 4.091 25 S 0.287 5.713 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.039 0.961 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.003 0.997 34 H 0.053 0.947 35 H 0.033 0.967 36 H -0.017 1.017 37 H 0.258 0.742 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -13.335 17.883 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.388 3.612 4 O -0.428 6.428 5 C -0.423 4.423 6 C -0.065 4.065 7 C -0.153 4.153 8 C -0.013 4.013 9 N -0.251 5.251 10 C -0.051 4.051 11 C -0.131 4.131 12 C 0.025 3.975 13 C -0.567 4.567 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.209 1.209 21 C -0.136 4.136 22 C -0.062 4.062 23 C -0.278 4.278 24 C -0.149 4.149 25 S 0.558 5.442 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.057 0.943 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.001 0.999 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.220 -15.060 17.664 23.435 hybrid contribution -0.867 2.893 -1.214 3.255 sum -4.087 -12.167 16.451 20.865 Atomic orbital electron populations 1.23632 0.73772 1.06174 1.02723 1.86563 1.25698 1.30990 1.84214 1.19849 0.87523 0.81818 0.72006 1.90870 1.66795 1.37000 1.48153 1.23370 0.93947 1.00046 1.24970 1.20687 0.92921 0.98255 0.94670 1.18462 0.93146 0.95415 1.08317 1.20823 0.96060 0.93881 0.90512 1.62123 1.22494 1.36601 1.03863 1.21932 0.91951 0.98187 0.93031 1.21387 0.99733 0.98203 0.93729 1.18666 0.92973 0.92672 0.93199 1.21634 0.92922 1.49780 0.92382 0.92844 1.25771 0.95226 0.94992 1.02839 1.70050 1.04076 1.51814 1.30094 0.85586 0.78994 0.77456 0.80108 1.18891 1.20724 1.20873 1.21525 0.97994 1.00369 0.93686 1.22089 0.96837 0.89222 0.98089 1.24675 1.03486 0.97088 1.02578 1.20609 0.87376 1.02507 1.04428 1.82799 0.90847 1.04698 1.65901 0.91480 0.92190 0.84224 0.84435 0.94308 0.87280 0.91971 0.97876 0.92880 0.94848 0.99920 0.93273 0.92803 0.92506 0.96378 0.88442 0.87959 0.89414 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 16 2 O -0.36 -8.40 10.42 -58.18 -0.61 -9.01 16 3 C 0.54 15.79 7.92 69.94 0.55 16.34 16 4 O -0.54 -18.63 16.64 19.41 0.32 -18.31 16 5 C -0.31 -8.35 6.45 24.05 0.16 -8.19 16 6 C -0.03 -0.87 8.82 21.73 0.19 -0.68 16 7 C -0.14 -3.64 3.55 -21.05 -0.07 -3.72 16 8 C 0.12 2.96 4.76 85.56 0.41 3.36 16 9 N -0.53 -17.12 4.59 -900.92 -4.14 -21.25 16 10 C 0.08 3.10 4.86 86.33 0.42 3.52 16 11 C -0.09 -4.53 5.12 30.64 0.16 -4.37 16 12 C 0.04 2.23 2.16 -11.46 -0.02 2.20 16 13 C -0.53 -29.73 8.57 25.60 0.22 -29.51 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.55 5.31 84.65 0.45 1.00 16 16 N -0.92 -54.94 11.37 21.45 0.24 -54.70 16 17 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 18 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 C -0.10 -3.98 5.32 30.65 0.16 -3.82 16 22 C 0.07 2.14 5.42 86.33 0.47 2.61 16 23 C -0.16 -3.42 6.28 24.69 0.15 -3.26 16 24 C -0.09 -1.51 9.77 71.24 0.70 -0.81 16 25 S 0.29 5.93 22.87 -56.49 -1.29 4.64 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.04 1.00 8.02 -2.39 -0.02 0.98 16 31 H 0.11 2.18 7.72 -2.39 -0.02 2.17 16 32 H 0.06 2.43 6.03 -2.38 -0.01 2.42 16 33 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.05 3.00 6.18 -2.39 -0.01 2.98 16 35 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 36 H -0.02 -1.01 8.14 -2.38 -0.02 -1.02 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 41 H 0.10 2.51 8.12 -2.38 -0.02 2.49 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.76 7.25 -2.39 -0.02 1.74 16 44 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -69.07 368.60 2.68 -66.39 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.99 Total: 9.34 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 5.13 Total: -23.64 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -3.89 Total: -75.95 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.28 Total: -27.32 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.29 Total: 4.64 kcal Total: -69.07 2.68 -66.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542879526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.553 kcal (2) G-P(sol) polarization free energy of solvation -69.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds