Wall clock time and date at job start Tue Mar 31 2020 14:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38227 * 119.99909 * 2 1 4 4 C 1.38235 * 119.99658 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00187 * 359.95451 * 4 3 2 6 6 C 1.50703 * 120.00313 * 180.02562 * 5 4 3 7 7 H 1.09008 * 115.56017 * 334.31892 * 6 5 4 8 8 C 1.52991 * 117.50099 * 188.62718 * 6 5 4 9 9 C 1.52994 * 117.49916 * 119.99990 * 6 5 4 10 10 H 1.09007 * 117.51824 * 0.02562 * 9 6 5 11 11 N 1.46502 * 117.50356 * 214.98052 * 9 6 5 12 12 S 1.65597 * 120.00152 * 144.98580 * 11 9 6 13 13 O 1.42109 * 104.27841 * 308.93345 * 12 11 9 14 14 O 1.42091 * 104.27776 * 181.07589 * 12 11 9 15 15 C 1.81403 * 104.44918 * 65.00479 * 12 11 9 16 16 C 1.52996 * 109.47027 * 180.02562 * 15 12 11 17 17 C 1.53002 * 109.46737 * 180.02562 * 16 15 12 18 18 C 1.50706 * 109.47153 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99501 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00436 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00481 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 359.72901 * 20 18 17 23 23 H 1.48502 * 109.46964 * 270.27509 * 22 20 18 24 24 H 1.48505 * 109.47036 * 30.26897 * 22 20 18 25 25 H 1.48490 * 109.47395 * 150.27411 * 22 20 18 26 26 C 1.38231 * 119.99946 * 0.28238 * 5 4 3 27 27 C 1.38233 * 119.99893 * 359.50548 * 26 5 4 28 28 H 1.09006 * 109.47154 * 89.99545 * 1 2 3 29 29 H 1.08998 * 109.47484 * 209.99550 * 1 2 3 30 30 H 1.08998 * 109.47203 * 329.99850 * 1 2 3 31 31 H 1.07996 * 120.00295 * 359.97438 * 3 2 1 32 32 H 1.08010 * 120.00182 * 179.97438 * 4 3 2 33 33 H 1.08999 * 117.49971 * 145.02372 * 8 6 5 34 34 H 1.09001 * 117.52179 * 359.97438 * 8 6 5 35 35 H 0.97003 * 119.99954 * 324.99508 * 11 9 6 36 36 H 1.08999 * 109.47173 * 59.99457 * 15 12 11 37 37 H 1.09001 * 109.46893 * 299.99771 * 15 12 11 38 38 H 1.08991 * 109.47455 * 60.00036 * 16 15 12 39 39 H 1.09001 * 109.46830 * 299.99482 * 16 15 12 40 40 H 1.09004 * 109.47503 * 59.99893 * 17 16 15 41 41 H 1.09001 * 109.46939 * 299.99294 * 17 16 15 42 42 H 0.96999 * 120.00235 * 179.72806 * 21 20 18 43 43 H 1.08003 * 120.00569 * 179.72690 * 26 5 4 44 44 H 1.08010 * 120.00350 * 180.25401 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1970 -0.0005 5 6 4.2716 -0.0001 -0.0001 6 6 5.7787 -0.0002 -0.0001 7 1 6.2491 0.8859 -0.4266 8 6 6.4850 -1.3420 -0.2032 9 6 6.4851 -0.6784 1.1754 10 1 5.8601 -1.1250 1.9488 11 7 7.7419 -0.0874 1.6416 12 16 8.1206 -0.1119 3.2535 13 8 6.9662 0.4154 3.8928 14 8 9.3710 0.5588 3.3299 15 6 8.3174 -1.8721 3.6456 16 6 8.6724 -2.0283 5.1256 17 6 8.8390 -3.5129 5.4560 18 6 9.1893 -3.6668 6.9137 19 1 9.2841 -2.7931 7.5414 20 6 9.3888 -4.9229 7.4459 21 7 9.6951 -5.0572 8.7178 22 14 9.2174 -6.4346 6.3619 23 1 7.8108 -6.9097 6.3939 24 1 9.5913 -6.0884 4.9670 25 1 10.1137 -7.5072 6.8629 26 6 3.5805 -1.1972 -0.0051 27 6 2.1982 -1.1972 -0.0001 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5138 31 1 1.6582 2.1324 -0.0004 32 1 4.1206 2.1324 -0.0010 33 1 7.4201 -1.3388 -0.7633 34 1 5.8601 -2.2251 -0.3365 35 1 8.3522 0.3184 1.0061 36 1 9.1148 -2.2937 3.0337 37 1 7.3846 -2.3968 3.4387 38 1 7.8747 -1.6069 5.7371 39 1 9.6050 -1.5035 5.3328 40 1 9.6370 -3.9340 4.8445 41 1 7.9066 -4.0381 5.2487 42 1 9.8315 -5.9412 9.0931 43 1 4.1204 -2.1326 -0.0092 44 1 1.6580 -2.1326 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580772041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:17 Heat of formation + Delta-G solvation = -41.553621 kcal Electronic energy + Delta-G solvation = -24124.903370 eV Core-core repulsion = 20555.333996 eV Total energy + Delta-G solvation = -3569.569374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09553 -37.96628 -36.94923 -35.84369 -34.83089 -33.61704 -32.22703 -31.75155 -31.09673 -28.39786 -27.28281 -23.65688 -23.44499 -22.57215 -22.37160 -20.61680 -20.40701 -19.44186 -17.78029 -16.99278 -16.81556 -16.56949 -15.92396 -15.62597 -15.25837 -15.20553 -14.37758 -14.25986 -14.19900 -14.05782 -13.64574 -13.19195 -12.97628 -12.73735 -12.54029 -12.44654 -12.34942 -12.21290 -12.11814 -11.99237 -11.91957 -11.86017 -11.59338 -11.42756 -11.20618 -11.00453 -10.95893 -10.70149 -10.10633 -9.89290 -9.75941 -9.39677 -9.26524 -9.16652 -8.59697 -8.52416 -6.09227 -4.08636 0.32442 1.03020 1.16456 2.65759 3.25691 3.26428 3.33324 3.35207 3.69336 3.89551 4.18448 4.34744 4.39378 4.47149 4.50141 4.58839 4.63127 4.67456 4.75537 4.85331 5.01844 5.08286 5.13767 5.20930 5.24653 5.27761 5.36330 5.47673 5.51161 5.69341 5.72259 5.81130 5.84736 5.88888 6.12136 6.18210 6.24708 6.34575 6.36753 6.65006 6.73009 6.75922 7.11108 7.25211 7.69969 8.46687 8.95188 9.51772 11.04050 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.002727 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.346829 B =10266.576718 C =11353.642114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.106 4.106 5 C -0.056 4.056 6 C -0.121 4.121 7 H 0.118 0.882 8 C -0.182 4.182 9 C 0.101 3.899 10 H 0.139 0.861 11 N -1.094 6.094 12 S 2.602 3.398 13 O -0.955 6.955 14 O -0.959 6.959 15 C -0.613 4.613 16 C -0.098 4.098 17 C -0.004 4.004 18 C -0.527 4.527 19 H 0.075 0.925 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.266 1.266 25 H -0.287 1.287 26 C -0.118 4.118 27 C -0.117 4.117 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.416 0.584 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.125 0.875 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 9.475 -24.132 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.056 4.056 6 C -0.142 4.142 7 H 0.136 0.864 8 C -0.221 4.221 9 C -0.008 4.008 10 H 0.156 0.844 11 N -0.847 5.847 12 S 2.698 3.302 13 O -0.945 6.945 14 O -0.949 6.949 15 C -0.745 4.745 16 C -0.138 4.138 17 C -0.043 4.043 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.191 1.191 25 H -0.213 1.213 26 C -0.136 4.136 27 C -0.135 4.135 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.250 0.750 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.143 0.857 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.091 10.064 -23.286 29.019 hybrid contribution 0.230 -1.387 -1.010 1.731 sum -13.861 8.677 -24.296 29.287 Atomic orbital electron populations 1.20794 0.91259 1.02879 1.02197 1.19944 0.96110 0.93276 0.99914 1.21013 0.94060 0.97585 1.00904 1.20963 0.94092 0.97580 0.99805 1.19060 0.92856 0.93417 1.00290 1.21540 0.91134 0.97850 1.03641 0.86445 1.23663 1.02813 0.96161 0.99484 1.21496 0.87010 1.00073 0.92230 0.84369 1.55400 1.27727 1.73280 1.28338 1.05320 0.74151 0.78283 0.72447 1.93600 1.50375 1.76706 1.73783 1.93594 1.44323 1.72284 1.84729 1.30607 1.11244 1.23670 1.08984 1.21324 1.01990 1.02809 0.87638 1.19531 0.96659 0.90198 0.97901 1.21133 1.47894 0.94478 0.93001 0.90722 1.25027 0.94479 0.99031 0.94895 1.69909 1.48070 1.23553 1.12336 0.86773 0.78283 0.82817 0.81368 1.20212 1.19053 1.21280 1.21069 0.94233 0.97738 1.00517 1.21015 0.94053 0.97596 1.00790 0.91286 0.91499 0.91546 0.86055 0.85957 0.87624 0.87333 0.75026 0.85149 0.85459 0.90935 0.90928 0.96162 0.96600 0.92616 0.85696 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.09 -0.78 5.88 -104.63 -0.62 -1.40 16 3 C -0.12 -1.02 9.70 -39.59 -0.38 -1.40 16 4 C -0.11 -0.98 9.74 -39.58 -0.39 -1.37 16 5 C -0.06 -0.52 5.61 -104.62 -0.59 -1.11 16 6 C -0.12 -1.00 5.97 -91.78 -0.55 -1.55 16 7 H 0.12 0.87 8.14 -51.92 -0.42 0.45 16 8 C -0.18 -1.26 9.78 -26.74 -0.26 -1.52 16 9 C 0.10 0.92 5.98 -67.93 -0.41 0.52 16 10 H 0.14 1.29 8.11 -51.93 -0.42 0.87 16 11 N -1.09 -10.79 5.93 -4.89 -0.03 -10.82 16 12 S 2.60 36.02 5.44 -107.50 -0.58 35.44 16 13 O -0.95 -16.37 17.82 -57.54 -1.03 -17.40 16 14 O -0.96 -16.13 18.08 -57.54 -1.04 -17.17 16 15 C -0.61 -8.57 6.07 37.16 0.23 -8.35 16 16 C -0.10 -1.89 5.16 -26.73 -0.14 -2.02 16 17 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 18 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 19 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 22 Si 0.88 21.31 27.46 -169.99 -4.67 16.64 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.09 6.55 56.52 0.37 -5.72 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.12 -1.03 9.30 -39.59 -0.37 -1.40 16 27 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.64 6.17 -51.93 -0.32 0.32 16 35 H 0.42 3.24 8.92 -34.47 -0.31 2.93 16 36 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 37 H 0.13 1.51 8.14 -51.92 -0.42 1.08 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.02 0.46 7.21 -51.93 -0.37 0.08 16 41 H 0.02 0.35 7.56 -51.93 -0.39 -0.04 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.13 0.88 6.02 -52.48 -0.32 0.56 16 44 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -36.35 379.16 -11.68 -48.03 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.79 Total: 1.42 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: -4.03 Total: -34.96 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.74 Total: -37.71 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -2.07 Total: -34.57 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 36.02 SS G_CDS: -0.58 Total: 35.44 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.35 -11.68 -48.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580772041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.474 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds