Wall clock time and date at job start Tue Mar 31 2020 14:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38227 * 119.99909 * 2 1 4 4 C 1.38235 * 119.99658 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00187 * 359.95451 * 4 3 2 6 6 C 1.50703 * 120.00313 * 180.02562 * 5 4 3 7 7 H 1.09008 * 115.56017 * 334.31892 * 6 5 4 8 8 C 1.52991 * 117.50099 * 188.62718 * 6 5 4 9 9 C 1.52994 * 117.49916 * 119.99990 * 6 5 4 10 10 H 1.09007 * 117.51824 * 0.02562 * 9 6 5 11 11 N 1.46502 * 117.50356 * 214.98052 * 9 6 5 12 12 S 1.65597 * 120.00152 * 144.98580 * 11 9 6 13 13 O 1.42109 * 104.27841 * 308.93345 * 12 11 9 14 14 O 1.42091 * 104.27776 * 181.07589 * 12 11 9 15 15 C 1.81403 * 104.44918 * 65.00479 * 12 11 9 16 16 C 1.52996 * 109.47027 * 180.02562 * 15 12 11 17 17 C 1.53002 * 109.46737 * 180.02562 * 16 15 12 18 18 C 1.50706 * 109.47153 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99501 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00436 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00481 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 359.72901 * 20 18 17 23 23 H 1.48502 * 109.46964 * 270.27509 * 22 20 18 24 24 H 1.48505 * 109.47036 * 30.26897 * 22 20 18 25 25 H 1.48490 * 109.47395 * 150.27411 * 22 20 18 26 26 C 1.38231 * 119.99946 * 0.28238 * 5 4 3 27 27 C 1.38233 * 119.99893 * 359.50548 * 26 5 4 28 28 H 1.09006 * 109.47154 * 89.99545 * 1 2 3 29 29 H 1.08998 * 109.47484 * 209.99550 * 1 2 3 30 30 H 1.08998 * 109.47203 * 329.99850 * 1 2 3 31 31 H 1.07996 * 120.00295 * 359.97438 * 3 2 1 32 32 H 1.08010 * 120.00182 * 179.97438 * 4 3 2 33 33 H 1.08999 * 117.49971 * 145.02372 * 8 6 5 34 34 H 1.09001 * 117.52179 * 359.97438 * 8 6 5 35 35 H 0.97003 * 119.99954 * 324.99508 * 11 9 6 36 36 H 1.08999 * 109.47173 * 59.99457 * 15 12 11 37 37 H 1.09001 * 109.46893 * 299.99771 * 15 12 11 38 38 H 1.08991 * 109.47455 * 60.00036 * 16 15 12 39 39 H 1.09001 * 109.46830 * 299.99482 * 16 15 12 40 40 H 1.09004 * 109.47503 * 59.99893 * 17 16 15 41 41 H 1.09001 * 109.46939 * 299.99294 * 17 16 15 42 42 H 0.96999 * 120.00235 * 179.72806 * 21 20 18 43 43 H 1.08003 * 120.00569 * 179.72690 * 26 5 4 44 44 H 1.08010 * 120.00350 * 180.25401 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1970 -0.0005 5 6 4.2716 -0.0001 -0.0001 6 6 5.7787 -0.0002 -0.0001 7 1 6.2491 0.8859 -0.4266 8 6 6.4850 -1.3420 -0.2032 9 6 6.4851 -0.6784 1.1754 10 1 5.8601 -1.1250 1.9488 11 7 7.7419 -0.0874 1.6416 12 16 8.1206 -0.1119 3.2535 13 8 6.9662 0.4154 3.8928 14 8 9.3710 0.5588 3.3299 15 6 8.3174 -1.8721 3.6456 16 6 8.6724 -2.0283 5.1256 17 6 8.8390 -3.5129 5.4560 18 6 9.1893 -3.6668 6.9137 19 1 9.2841 -2.7931 7.5414 20 6 9.3888 -4.9229 7.4459 21 7 9.6951 -5.0572 8.7178 22 14 9.2174 -6.4346 6.3619 23 1 7.8108 -6.9097 6.3939 24 1 9.5913 -6.0884 4.9670 25 1 10.1137 -7.5072 6.8629 26 6 3.5805 -1.1972 -0.0051 27 6 2.1982 -1.1972 -0.0001 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5138 31 1 1.6582 2.1324 -0.0004 32 1 4.1206 2.1324 -0.0010 33 1 7.4201 -1.3388 -0.7633 34 1 5.8601 -2.2251 -0.3365 35 1 8.3522 0.3184 1.0061 36 1 9.1148 -2.2937 3.0337 37 1 7.3846 -2.3968 3.4387 38 1 7.8747 -1.6069 5.7371 39 1 9.6050 -1.5035 5.3328 40 1 9.6370 -3.9340 4.8445 41 1 7.9066 -4.0381 5.2487 42 1 9.8315 -5.9412 9.0931 43 1 4.1204 -2.1326 -0.0092 44 1 1.6580 -2.1326 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580772041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:17 Heat of formation + Delta-G solvation = -65.929054 kcal Electronic energy + Delta-G solvation = -24125.960368 eV Core-core repulsion = 20555.333996 eV Total energy + Delta-G solvation = -3570.626372 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69783 -38.62805 -38.15051 -37.07994 -36.50519 -34.30727 -34.24810 -32.40327 -31.70576 -30.15638 -27.82972 -25.40021 -24.04147 -23.21020 -23.00418 -22.26949 -21.06080 -20.49425 -18.99073 -18.77616 -17.71265 -17.38020 -17.12149 -16.59236 -16.21404 -16.03778 -15.85827 -15.62777 -14.91424 -14.83654 -14.58414 -14.23989 -14.09545 -13.86419 -13.65198 -13.38637 -13.30386 -13.21916 -13.20515 -13.13315 -13.02146 -12.89333 -12.69296 -12.55394 -12.50258 -12.04397 -11.84144 -11.78522 -11.64408 -11.41180 -11.35899 -11.17635 -10.77206 -10.19647 -9.79592 -9.15526 -8.29563 -6.35700 -0.78621 0.40390 0.53416 1.37298 1.40120 1.51714 1.69880 2.36863 2.63088 2.74856 3.05598 3.14947 3.21419 3.63541 3.70676 3.81883 3.89923 3.94472 4.01678 4.05426 4.11796 4.17839 4.30675 4.34526 4.55034 4.61686 4.65088 4.82573 4.84579 4.85382 4.94821 4.96803 4.99782 5.15054 5.22450 5.25732 5.32967 5.34567 5.46450 5.56544 5.62844 5.73688 5.74857 6.04820 6.16224 6.25467 6.72703 7.28989 8.87464 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.002727 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.346829 B =10266.576718 C =11353.642114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 C -0.131 4.131 4 C -0.125 4.125 5 C -0.071 4.071 6 C -0.125 4.125 7 H 0.123 0.877 8 C -0.158 4.158 9 C 0.076 3.924 10 H 0.136 0.864 11 N -1.077 6.077 12 S 2.625 3.375 13 O -0.992 6.992 14 O -0.993 6.993 15 C -0.606 4.606 16 C -0.105 4.105 17 C -0.005 4.005 18 C -0.544 4.544 19 H 0.028 0.972 20 C -0.001 4.001 21 N -0.953 5.953 22 Si 0.956 3.044 23 H -0.264 1.264 24 H -0.237 1.237 25 H -0.286 1.286 26 C -0.126 4.126 27 C -0.129 4.129 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.427 0.573 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.267 0.733 43 H 0.142 0.858 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.950 7.874 -27.515 32.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.104 4.104 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.146 4.146 7 H 0.141 0.859 8 C -0.197 4.197 9 C -0.032 4.032 10 H 0.153 0.847 11 N -0.835 5.835 12 S 2.721 3.279 13 O -0.982 6.982 14 O -0.983 6.983 15 C -0.738 4.738 16 C -0.144 4.144 17 C -0.043 4.043 18 C -0.582 4.582 19 H 0.047 0.953 20 C -0.197 4.197 21 N -0.594 5.594 22 Si 0.779 3.221 23 H -0.189 1.189 24 H -0.160 1.160 25 H -0.212 1.212 26 C -0.144 4.144 27 C -0.147 4.147 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.264 0.736 36 H 0.177 0.823 37 H 0.173 0.827 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.160 0.840 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.929 8.497 -26.689 31.739 hybrid contribution 0.450 -0.795 0.076 0.916 sum -14.479 7.702 -26.613 31.261 Atomic orbital electron populations 1.20826 0.89813 1.03387 1.02970 1.20283 0.97392 0.93278 0.99481 1.21266 0.94172 0.98439 1.00997 1.21204 0.94643 0.98118 1.00338 1.19273 0.93561 0.93658 1.00656 1.21589 0.90683 0.99152 1.03137 0.85898 1.23783 1.03218 0.95724 0.96947 1.21698 0.86667 1.01626 0.93212 0.84687 1.54887 1.28379 1.73436 1.26808 1.04348 0.72684 0.77845 0.72997 1.93555 1.51628 1.77617 1.75426 1.93545 1.45737 1.73306 1.85697 1.30500 1.13736 1.24172 1.05360 1.21191 1.01513 1.00274 0.91460 1.19507 0.97515 0.93008 0.94308 1.21566 1.47742 0.93240 0.95686 0.95312 1.26139 0.93948 1.03168 0.96481 1.70087 1.49780 1.24645 1.14849 0.85574 0.78800 0.77475 0.80292 1.18897 1.15981 1.21243 1.21336 0.94558 0.98283 1.00225 1.21320 0.94368 0.98339 1.00650 0.90308 0.90927 0.91121 0.84856 0.85479 0.85996 0.85951 0.73568 0.82348 0.82653 0.91944 0.91911 0.94846 0.94960 0.92448 0.84009 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.51 16 2 C -0.10 -1.65 5.88 -19.87 -0.12 -1.77 16 3 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 4 C -0.12 -2.23 9.74 22.27 0.22 -2.01 16 5 C -0.07 -1.22 5.61 -19.87 -0.11 -1.33 16 6 C -0.13 -1.79 5.97 -11.54 -0.07 -1.86 16 7 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 8 C -0.16 -1.60 9.78 30.59 0.30 -1.30 16 9 C 0.08 1.19 5.98 44.99 0.27 1.46 16 10 H 0.14 2.21 8.11 -2.38 -0.02 2.19 16 11 N -1.08 -18.79 5.93 -169.38 -1.00 -19.79 16 12 S 2.63 69.55 5.44 -56.49 -0.31 69.24 16 13 O -0.99 -33.82 17.82 -127.65 -2.27 -36.10 16 14 O -0.99 -32.81 18.08 -127.65 -2.31 -35.12 16 15 C -0.61 -15.30 6.07 71.98 0.44 -14.86 16 16 C -0.11 -3.97 5.16 30.59 0.16 -3.81 16 17 C 0.00 -0.22 4.04 29.85 0.12 -0.09 16 18 C -0.54 -31.50 9.66 25.60 0.25 -31.26 16 19 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 20 C 0.00 -0.05 5.47 84.65 0.46 0.42 16 21 N -0.95 -60.23 13.96 21.45 0.30 -59.94 16 22 Si 0.96 42.88 27.46 68.60 1.88 44.77 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.24 -9.45 6.55 99.48 0.65 -8.80 16 25 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 26 C -0.13 -1.97 9.30 22.27 0.21 -1.76 16 27 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 28 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 30 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 31 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 0.93 6.17 -2.39 -0.01 0.92 16 35 H 0.43 5.59 8.92 -96.74 -0.86 4.73 16 36 H 0.16 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.16 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 40 H 0.03 1.41 7.21 -2.39 -0.02 1.39 16 41 H 0.03 1.34 7.56 -2.39 -0.02 1.32 16 42 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.14 1.58 6.02 -2.91 -0.02 1.56 16 44 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -80.95 379.16 -0.37 -81.32 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.08 Total: 18.06 kcal Atomic # 6 Polarization: -65.71 SS G_CDS: 3.27 Total: -62.45 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -0.70 Total: -79.73 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -4.58 Total: -71.22 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: 69.55 SS G_CDS: -0.31 Total: 69.24 kcal Total: -80.95 -0.37 -81.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580772041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.390 kcal (2) G-P(sol) polarization free energy of solvation -80.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds