Wall clock time and date at job start Tue Mar 31 2020 13:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 115.54973 * 2 1 4 4 C 1.53003 * 109.47133 * 34.32714 * 3 2 1 5 5 S 1.81405 * 109.46956 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54290 * 291.62565 * 5 4 3 7 7 O 1.42102 * 110.54099 * 68.37529 * 5 4 3 8 8 N 1.65596 * 104.45078 * 180.02562 * 5 4 3 9 9 C 1.46499 * 119.99934 * 64.99614 * 8 5 4 10 10 C 1.50708 * 109.46862 * 165.00326 * 9 8 5 11 11 C 1.38637 * 119.74619 * 269.73149 * 10 9 8 12 12 C 1.37616 * 120.24604 * 179.72307 * 11 10 9 13 13 C 1.40720 * 119.74537 * 0.57138 * 12 11 10 14 14 C 1.41388 * 120.24764 * 179.68368 * 13 12 11 15 15 H 1.08006 * 120.00414 * 204.40161 * 14 13 12 16 16 C 1.39948 * 120.00080 * 24.40246 * 14 13 12 17 17 N 1.30828 * 119.99826 * 17.84814 * 16 14 13 18 18 Si 1.86803 * 120.00073 * 197.84735 * 16 14 13 19 19 H 1.48494 * 109.46891 * 60.00175 * 18 16 14 20 20 H 1.48504 * 109.46947 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46939 * 299.99633 * 18 16 14 22 22 C 1.40723 * 119.51090 * 359.70133 * 13 12 11 23 23 C 1.37620 * 119.74134 * 0.02562 * 22 13 12 24 24 C 1.52998 * 117.51311 * 145.69927 * 2 1 3 25 25 C 1.52993 * 117.49626 * 214.32747 * 2 1 3 26 26 H 1.08997 * 109.46919 * 85.58296 * 1 2 3 27 27 H 1.08997 * 109.47163 * 205.58351 * 1 2 3 28 28 H 1.09001 * 109.46719 * 325.58847 * 1 2 3 29 29 H 1.09006 * 109.46831 * 274.32986 * 3 2 1 30 30 H 1.08997 * 109.47135 * 154.32867 * 3 2 1 31 31 H 1.08997 * 109.47236 * 300.00092 * 4 3 2 32 32 H 1.09006 * 109.47039 * 60.00400 * 4 3 2 33 33 H 0.97000 * 120.00125 * 245.00642 * 8 5 4 34 34 H 1.08999 * 109.47502 * 284.99910 * 9 8 5 35 35 H 1.09000 * 109.46990 * 45.00446 * 9 8 5 36 36 H 1.08000 * 119.88040 * 359.97385 * 11 10 9 37 37 H 1.08004 * 120.13123 * 180.27533 * 12 11 10 38 38 H 0.96998 * 120.00042 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.12830 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.87308 * 180.02562 * 23 22 13 41 41 H 1.09000 * 117.49530 * 214.97145 * 24 2 1 42 42 H 1.08998 * 117.50175 * 359.97438 * 24 2 1 43 43 H 1.09004 * 117.50391 * 359.97438 * 25 2 1 44 44 H 1.08999 * 117.50110 * 145.00044 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 1.3351 2.3543 0.8135 5 16 2.1179 3.9907 0.8141 6 8 3.3276 3.9646 1.5594 7 8 2.0695 4.5671 -0.4839 8 7 1.1018 4.9346 1.7189 9 6 0.9135 4.6511 3.1438 10 6 0.2585 5.8342 3.8091 11 6 1.0435 6.8387 4.3538 12 6 0.4562 7.9264 4.9587 13 6 -0.9465 8.0106 5.0336 14 6 -1.5610 9.1201 5.6586 15 1 -2.5558 9.0264 6.0685 16 6 -0.8802 10.3396 5.7460 17 7 0.1474 10.5722 4.9704 18 14 -1.4386 11.6354 6.9702 19 1 -1.3618 11.0822 8.3461 20 1 -0.5588 12.8272 6.8654 21 1 -2.8395 12.0273 6.6716 22 6 -1.7331 6.9823 4.4823 23 6 -1.1242 5.9066 3.8771 24 6 2.2369 -1.1210 0.7647 25 6 2.2364 -1.1207 -0.7653 26 1 -0.3633 0.0791 -1.0246 27 1 -0.3633 -0.9269 0.4438 28 1 -0.3633 0.8478 0.5808 29 1 2.2766 1.7416 -1.0248 30 1 3.1823 1.3087 0.4452 31 1 0.3428 2.4260 0.3683 32 1 1.2484 1.9931 1.8383 33 1 0.6310 5.6751 1.3054 34 1 0.2790 3.7724 3.2587 35 1 1.8818 4.4633 3.6079 36 1 2.1199 6.7694 4.2997 37 1 1.0695 8.7100 5.3785 38 1 0.6191 11.4177 5.0307 39 1 -2.8104 7.0365 4.5346 40 1 -1.7259 5.1164 3.4529 41 1 3.1720 -0.8750 1.2678 42 1 1.6119 -1.8584 1.2683 43 1 1.6112 -1.8584 -1.2685 44 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583201630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:30 Heat of formation + Delta-G solvation = -46.500758 kcal Electronic energy + Delta-G solvation = -24343.778003 eV Core-core repulsion = 20773.994105 eV Total energy + Delta-G solvation = -3569.783898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.81345 -37.87561 -36.94197 -35.80854 -35.05175 -33.38307 -32.78954 -30.06575 -29.33567 -28.56873 -26.56859 -24.80325 -23.57974 -22.74209 -21.07819 -20.15937 -19.39324 -19.03961 -17.48022 -17.38323 -16.64394 -16.16386 -15.68948 -15.43946 -15.22006 -14.49400 -14.29045 -14.02466 -13.98134 -13.62410 -13.38092 -12.94447 -12.66370 -12.64888 -12.39256 -12.21876 -12.01454 -12.00468 -11.94889 -11.84975 -11.70975 -11.59271 -11.53336 -11.15732 -11.04970 -10.74977 -10.60577 -10.50242 -10.36427 -9.95894 -9.74813 -9.46875 -9.25215 -9.06136 -7.55823 -7.44628 -6.85604 -4.45253 0.35330 2.55350 2.93747 2.99465 3.02479 3.04779 3.23137 3.38057 3.84579 3.86149 4.16747 4.28899 4.34438 4.52792 4.54011 4.62319 4.79332 4.94702 5.13827 5.32072 5.34804 5.40186 5.43206 5.55678 5.58058 5.59189 5.67217 5.72791 5.75656 5.80509 5.96176 6.05201 6.20651 6.33860 6.40600 6.88118 6.98079 7.18321 7.25464 7.34644 7.51930 7.75650 7.96300 8.02077 8.20215 8.54850 8.79456 8.87559 10.08294 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.029514 B = 0.002355 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.474247 B =11886.460643 C =12348.286657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C -0.073 4.073 4 C -0.633 4.633 5 S 2.605 3.395 6 O -0.960 6.960 7 O -0.967 6.967 8 N -1.109 6.109 9 C 0.179 3.821 10 C -0.235 4.235 11 C -0.081 4.081 12 C -0.169 4.169 13 C 0.116 3.884 14 C -0.458 4.458 15 H 0.079 0.921 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.910 3.090 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.230 4.230 23 C -0.073 4.073 24 C -0.176 4.176 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.419 0.581 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.283 0.717 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -17.364 -7.366 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.761 4.761 5 S 2.697 3.303 6 O -0.950 6.950 7 O -0.957 6.957 8 N -0.870 5.870 9 C 0.055 3.945 10 C -0.238 4.238 11 C -0.100 4.100 12 C -0.189 4.189 13 C 0.113 3.887 14 C -0.487 4.487 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.411 5.411 18 Si 0.734 3.266 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.250 4.250 23 C -0.092 4.092 24 C -0.213 4.213 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.254 0.746 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.871 -17.060 -7.762 18.962 hybrid contribution -1.022 0.529 0.530 1.267 sum 1.849 -16.531 -7.232 18.138 Atomic orbital electron populations 1.21506 0.91776 1.02582 1.02256 1.21350 0.95081 0.90041 1.05758 1.20830 0.97733 0.92597 0.99992 1.30742 1.13222 1.22313 1.09832 1.05071 0.75077 0.76462 0.73650 1.93588 1.43000 1.86503 1.71889 1.93581 1.86960 1.75025 1.40131 1.55806 1.66325 1.45210 1.19658 1.19952 0.99526 0.96576 0.78462 1.18857 0.93268 0.99041 1.12673 1.20601 0.97274 0.94103 0.98004 1.21330 0.95159 0.97844 1.04535 1.17670 0.91875 0.91273 0.87892 1.19623 1.02174 0.94364 1.32572 0.90326 1.25962 0.94034 0.99701 0.94702 1.69814 1.16600 1.24385 1.30270 0.86337 0.79598 0.79181 0.81471 1.18732 1.20264 1.18949 1.20957 0.97709 0.98336 1.08016 1.20375 0.93271 0.96878 0.98644 1.23221 1.02582 1.01077 0.94390 1.23069 1.02542 1.01154 0.94581 0.92063 0.92352 0.91066 0.90033 0.90198 0.84498 0.84794 0.74570 0.92949 0.91176 0.89158 0.86357 0.90588 0.88951 0.89377 0.88558 0.88691 0.88664 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.49 37.16 0.35 -0.57 16 2 C -0.12 -0.99 2.47 -154.51 -0.38 -1.37 16 3 C -0.07 -0.66 5.41 -26.73 -0.14 -0.80 16 4 C -0.63 -5.81 5.08 37.16 0.19 -5.62 16 5 S 2.60 34.60 5.46 -107.50 -0.59 34.02 16 6 O -0.96 -15.93 17.49 -57.54 -1.01 -16.94 16 7 O -0.97 -15.65 18.08 -57.54 -1.04 -16.69 16 8 N -1.11 -16.10 5.88 -11.65 -0.07 -16.17 16 9 C 0.18 2.79 6.25 -5.19 -0.03 2.76 16 10 C -0.23 -4.70 5.30 -104.33 -0.55 -5.25 16 11 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 12 C -0.17 -4.26 8.70 -38.87 -0.34 -4.59 16 13 C 0.12 2.97 5.58 -106.82 -0.60 2.37 16 14 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 15 H 0.08 1.93 7.91 -52.48 -0.41 1.51 16 16 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 17 N -0.79 -19.85 10.95 55.55 0.61 -19.24 16 18 Si 0.91 18.13 29.60 -169.99 -5.03 13.10 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 C -0.23 -5.34 9.80 -38.87 -0.38 -5.72 16 23 C -0.07 -1.48 9.67 -39.66 -0.38 -1.87 16 24 C -0.18 -1.32 9.82 -26.73 -0.26 -1.58 16 25 C -0.18 -1.27 9.97 -26.73 -0.27 -1.54 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 28 H 0.07 0.52 5.59 -51.93 -0.29 0.23 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.69 7.90 -51.93 -0.41 0.28 16 31 H 0.14 1.05 6.45 -51.93 -0.33 0.72 16 32 H 0.13 1.06 8.14 -51.92 -0.42 0.63 16 33 H 0.42 6.27 8.61 -34.47 -0.30 5.97 16 34 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.07 1.09 7.63 -51.93 -0.40 0.69 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.12 3.10 6.16 -52.48 -0.32 2.77 16 38 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 39 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.09 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.10 0.70 8.05 -51.93 -0.42 0.29 16 42 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -30.87 375.65 -11.72 -42.59 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.65 Total: 9.98 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: -3.61 Total: -36.32 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.54 Total: -35.41 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -2.05 Total: -33.63 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: 34.60 SS G_CDS: -0.59 Total: 34.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.87 -11.72 -42.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583201630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.912 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds