Wall clock time and date at job start Tue Mar 31 2020 13:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 115.54973 * 2 1 4 4 C 1.53003 * 109.47133 * 34.32714 * 3 2 1 5 5 S 1.81405 * 109.46956 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54290 * 291.62565 * 5 4 3 7 7 O 1.42102 * 110.54099 * 68.37529 * 5 4 3 8 8 N 1.65596 * 104.45078 * 180.02562 * 5 4 3 9 9 C 1.46499 * 119.99934 * 64.99614 * 8 5 4 10 10 C 1.50708 * 109.46862 * 165.00326 * 9 8 5 11 11 C 1.38637 * 119.74619 * 269.73149 * 10 9 8 12 12 C 1.37616 * 120.24604 * 179.72307 * 11 10 9 13 13 C 1.40720 * 119.74537 * 0.57138 * 12 11 10 14 14 C 1.41388 * 120.24764 * 179.68368 * 13 12 11 15 15 H 1.08006 * 120.00414 * 204.40161 * 14 13 12 16 16 C 1.39948 * 120.00080 * 24.40246 * 14 13 12 17 17 N 1.30828 * 119.99826 * 17.84814 * 16 14 13 18 18 Si 1.86803 * 120.00073 * 197.84735 * 16 14 13 19 19 H 1.48494 * 109.46891 * 60.00175 * 18 16 14 20 20 H 1.48504 * 109.46947 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46939 * 299.99633 * 18 16 14 22 22 C 1.40723 * 119.51090 * 359.70133 * 13 12 11 23 23 C 1.37620 * 119.74134 * 0.02562 * 22 13 12 24 24 C 1.52998 * 117.51311 * 145.69927 * 2 1 3 25 25 C 1.52993 * 117.49626 * 214.32747 * 2 1 3 26 26 H 1.08997 * 109.46919 * 85.58296 * 1 2 3 27 27 H 1.08997 * 109.47163 * 205.58351 * 1 2 3 28 28 H 1.09001 * 109.46719 * 325.58847 * 1 2 3 29 29 H 1.09006 * 109.46831 * 274.32986 * 3 2 1 30 30 H 1.08997 * 109.47135 * 154.32867 * 3 2 1 31 31 H 1.08997 * 109.47236 * 300.00092 * 4 3 2 32 32 H 1.09006 * 109.47039 * 60.00400 * 4 3 2 33 33 H 0.97000 * 120.00125 * 245.00642 * 8 5 4 34 34 H 1.08999 * 109.47502 * 284.99910 * 9 8 5 35 35 H 1.09000 * 109.46990 * 45.00446 * 9 8 5 36 36 H 1.08000 * 119.88040 * 359.97385 * 11 10 9 37 37 H 1.08004 * 120.13123 * 180.27533 * 12 11 10 38 38 H 0.96998 * 120.00042 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.12830 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.87308 * 180.02562 * 23 22 13 41 41 H 1.09000 * 117.49530 * 214.97145 * 24 2 1 42 42 H 1.08998 * 117.50175 * 359.97438 * 24 2 1 43 43 H 1.09004 * 117.50391 * 359.97438 * 25 2 1 44 44 H 1.08999 * 117.50110 * 145.00044 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 1.3351 2.3543 0.8135 5 16 2.1179 3.9907 0.8141 6 8 3.3276 3.9646 1.5594 7 8 2.0695 4.5671 -0.4839 8 7 1.1018 4.9346 1.7189 9 6 0.9135 4.6511 3.1438 10 6 0.2585 5.8342 3.8091 11 6 1.0435 6.8387 4.3538 12 6 0.4562 7.9264 4.9587 13 6 -0.9465 8.0106 5.0336 14 6 -1.5610 9.1201 5.6586 15 1 -2.5558 9.0264 6.0685 16 6 -0.8802 10.3396 5.7460 17 7 0.1474 10.5722 4.9704 18 14 -1.4386 11.6354 6.9702 19 1 -1.3618 11.0822 8.3461 20 1 -0.5588 12.8272 6.8654 21 1 -2.8395 12.0273 6.6716 22 6 -1.7331 6.9823 4.4823 23 6 -1.1242 5.9066 3.8771 24 6 2.2369 -1.1210 0.7647 25 6 2.2364 -1.1207 -0.7653 26 1 -0.3633 0.0791 -1.0246 27 1 -0.3633 -0.9269 0.4438 28 1 -0.3633 0.8478 0.5808 29 1 2.2766 1.7416 -1.0248 30 1 3.1823 1.3087 0.4452 31 1 0.3428 2.4260 0.3683 32 1 1.2484 1.9931 1.8383 33 1 0.6310 5.6751 1.3054 34 1 0.2790 3.7724 3.2587 35 1 1.8818 4.4633 3.6079 36 1 2.1199 6.7694 4.2997 37 1 1.0695 8.7100 5.3785 38 1 0.6191 11.4177 5.0307 39 1 -2.8104 7.0365 4.5346 40 1 -1.7259 5.1164 3.4529 41 1 3.1720 -0.8750 1.2678 42 1 1.6119 -1.8584 1.2683 43 1 1.6112 -1.8584 -1.2685 44 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583201630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:29 Heat of formation + Delta-G solvation = -65.389468 kcal Electronic energy + Delta-G solvation = -24344.597079 eV Core-core repulsion = 20773.994105 eV Total energy + Delta-G solvation = -3570.602974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.57670 -39.38922 -38.13129 -36.99053 -36.52115 -35.01788 -33.49840 -31.75729 -31.10741 -29.10449 -28.18677 -25.54308 -25.16018 -23.26671 -22.86372 -21.83963 -20.31693 -19.82399 -19.21344 -18.55038 -17.73877 -17.22873 -17.14320 -16.32149 -16.25239 -15.75565 -15.64708 -15.48892 -15.08678 -14.87320 -14.27415 -14.01769 -13.92655 -13.78841 -13.69686 -13.52245 -13.21907 -13.18457 -13.13156 -13.03830 -12.80284 -12.71815 -12.58821 -12.35196 -12.29490 -12.17354 -12.09104 -11.53978 -11.44939 -11.23961 -11.02830 -11.01885 -10.51855 -10.23393 -9.35879 -9.24093 -8.65263 -6.34728 -0.68459 0.90819 1.17468 1.37474 1.47613 1.50977 1.92268 2.19608 2.72351 2.79608 2.90320 3.28364 3.52517 3.75462 3.76801 3.89020 4.02195 4.08215 4.11290 4.33383 4.38405 4.48467 4.56138 4.67790 4.72512 4.75273 4.81595 4.82914 5.00522 5.04877 5.08132 5.10355 5.14626 5.15824 5.19797 5.29253 5.40065 5.43465 5.46321 5.71812 5.95868 6.11250 6.14463 6.25184 6.39613 6.71464 6.93772 7.04378 8.30961 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.029514 B = 0.002355 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.474247 B =11886.460643 C =12348.286657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C -0.084 4.084 4 C -0.602 4.602 5 S 2.611 3.389 6 O -1.000 7.000 7 O -1.000 7.000 8 N -1.115 6.115 9 C 0.179 3.821 10 C -0.218 4.218 11 C -0.093 4.093 12 C -0.197 4.197 13 C 0.081 3.919 14 C -0.499 4.499 15 H 0.077 0.923 16 C 0.033 3.967 17 N -0.824 5.824 18 Si 0.982 3.018 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.258 1.258 22 C -0.245 4.245 23 C -0.068 4.068 24 C -0.178 4.178 25 C -0.177 4.177 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.417 0.583 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.287 0.713 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -20.059 -7.859 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.130 4.130 3 C -0.123 4.123 4 C -0.735 4.735 5 S 2.709 3.291 6 O -0.990 6.990 7 O -0.991 6.991 8 N -0.874 5.874 9 C 0.054 3.946 10 C -0.221 4.221 11 C -0.112 4.112 12 C -0.216 4.216 13 C 0.079 3.921 14 C -0.528 4.528 15 H 0.096 0.904 16 C -0.182 4.182 17 N -0.450 5.450 18 Si 0.803 3.197 19 H -0.184 1.184 20 H -0.195 1.195 21 H -0.182 1.182 22 C -0.264 4.264 23 C -0.086 4.086 24 C -0.215 4.215 25 C -0.214 4.214 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.180 0.820 32 H 0.177 0.823 33 H 0.251 0.749 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.149 0.851 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.820 -19.712 -8.249 21.445 hybrid contribution -0.626 1.093 0.539 1.370 sum 1.195 -18.619 -7.710 20.188 Atomic orbital electron populations 1.21564 0.91076 1.03203 1.02651 1.21363 0.95596 0.89411 1.06604 1.20975 0.97991 0.93236 1.00125 1.30486 1.13549 1.17538 1.11892 1.04712 0.74340 0.77742 0.72290 1.93537 1.45465 1.87607 1.72362 1.93537 1.87289 1.76952 1.41303 1.55603 1.66265 1.46227 1.19284 1.20030 1.00139 0.95926 0.78464 1.19308 0.93322 0.99117 1.10327 1.20841 0.98063 0.94242 0.98014 1.21270 0.95241 0.98674 1.06446 1.18017 0.92413 0.92529 0.89152 1.19864 1.02767 0.95518 1.34641 0.90442 1.26800 0.93933 1.01512 0.95989 1.69884 1.18015 1.25247 1.31863 0.85256 0.79339 0.76421 0.78732 1.18443 1.19455 1.18207 1.21213 0.98153 0.98817 1.08250 1.20778 0.93765 0.96865 0.97212 1.23300 1.02626 1.00950 0.94605 1.23157 1.02671 1.00908 0.94659 0.91816 0.91660 0.90585 0.89908 0.90131 0.82021 0.82347 0.74880 0.88392 0.91165 0.88470 0.88658 0.90198 0.88257 0.85063 0.88669 0.87874 0.87802 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.49 71.98 0.68 -0.73 16 2 C -0.13 -1.67 2.47 -52.18 -0.13 -1.79 16 3 C -0.08 -1.27 5.41 30.59 0.17 -1.10 16 4 C -0.60 -8.64 5.08 71.98 0.37 -8.27 16 5 S 2.61 64.37 5.46 -56.49 -0.31 64.06 16 6 O -1.00 -32.13 17.49 -127.65 -2.23 -34.37 16 7 O -1.00 -31.42 18.08 -127.65 -2.31 -33.72 16 8 N -1.11 -29.64 5.88 -190.78 -1.12 -30.76 16 9 C 0.18 4.97 6.25 85.64 0.53 5.51 16 10 C -0.22 -8.29 5.30 -19.67 -0.10 -8.39 16 11 C -0.09 -4.20 9.67 22.22 0.21 -3.98 16 12 C -0.20 -10.33 8.70 22.73 0.20 -10.13 16 13 C 0.08 4.32 5.58 -21.29 -0.12 4.20 16 14 C -0.50 -26.64 9.05 23.46 0.21 -26.43 16 15 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 16 C 0.03 1.65 5.14 85.26 0.44 2.09 16 17 N -0.82 -43.65 10.95 21.83 0.24 -43.41 16 18 Si 0.98 38.19 29.60 68.60 2.03 40.22 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 C -0.24 -11.30 9.80 22.73 0.22 -11.08 16 23 C -0.07 -2.59 9.67 22.22 0.21 -2.38 16 24 C -0.18 -2.14 9.82 30.59 0.30 -1.84 16 25 C -0.18 -2.08 9.97 30.59 0.31 -1.78 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.63 7.90 -2.39 -0.02 0.62 16 28 H 0.08 0.74 5.59 -2.39 -0.01 0.73 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 1.21 7.90 -2.39 -0.02 1.19 16 31 H 0.16 1.66 6.45 -2.39 -0.02 1.65 16 32 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.42 11.73 8.61 -96.75 -0.83 10.89 16 34 H 0.10 1.89 8.08 -2.39 -0.02 1.88 16 35 H 0.07 1.99 7.63 -2.39 -0.02 1.97 16 36 H 0.10 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.10 5.33 6.16 -2.91 -0.02 5.32 16 38 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 39 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.09 1.16 8.05 -2.39 -0.02 1.14 16 42 H 0.10 1.07 8.05 -2.39 -0.02 1.05 16 43 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.15 375.65 -0.03 -70.18 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.17 Total: 33.91 kcal Atomic # 6 Polarization: -69.61 SS G_CDS: 3.50 Total: -66.11 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -0.88 Total: -74.17 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -4.54 Total: -68.09 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 16 Polarization: 64.37 SS G_CDS: -0.31 Total: 64.06 kcal Total: -70.15 -0.03 -70.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583201630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.786 kcal (2) G-P(sol) polarization free energy of solvation -70.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds