Wall clock time and date at job start Tue Mar 31 2020 13:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47052 * 270.00066 * 3 2 1 5 5 H 1.48498 * 109.47046 * 30.00532 * 3 2 1 6 6 H 1.48498 * 109.46723 * 150.00363 * 3 2 1 7 7 C 1.37873 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00365 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99784 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47340 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.47569 * 179.97438 * 10 9 7 12 12 C 1.35908 * 117.00226 * 180.02562 * 11 10 9 13 13 C 1.38921 * 119.96776 * 0.02562 * 12 11 10 14 14 C 1.38304 * 120.30631 * 180.02562 * 13 12 11 15 15 C 1.37914 * 120.24244 * 359.96314 * 14 13 12 16 16 C 1.39921 * 119.92693 * 0.02562 * 15 14 13 17 17 C 1.47074 * 120.15107 * 179.97438 * 16 15 14 18 18 C 1.35165 * 119.99859 * 311.85512 * 17 16 15 19 19 C 1.46122 * 120.00132 * 348.79945 * 18 17 16 20 20 O 1.21691 * 119.99958 * 353.57737 * 19 18 17 21 21 C 1.48178 * 119.99983 * 173.57405 * 19 18 17 22 22 C 1.39859 * 120.92490 * 359.72232 * 21 19 18 23 23 C 1.38109 * 118.99742 * 179.73171 * 22 21 19 24 24 N 1.31838 * 120.89898 * 0.55719 * 23 22 21 25 25 C 1.31831 * 122.05296 * 359.71336 * 24 23 22 26 26 C 1.38111 * 120.89961 * 0.02562 * 25 24 23 27 27 C 1.38348 * 119.96703 * 180.02562 * 12 11 10 28 28 H 0.97000 * 120.00518 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47591 * 59.99535 * 9 7 2 30 30 H 1.09000 * 109.47525 * 299.99540 * 9 7 2 31 31 H 1.09003 * 109.46811 * 59.99900 * 10 9 7 32 32 H 1.09001 * 109.47002 * 300.00110 * 10 9 7 33 33 H 1.08006 * 119.84702 * 0.02879 * 13 12 11 34 34 H 1.08007 * 119.88175 * 180.02562 * 14 13 12 35 35 H 1.08000 * 120.03749 * 180.29691 * 15 14 13 36 36 H 1.07996 * 119.99834 * 131.85302 * 17 16 15 37 37 H 1.08002 * 119.99775 * 168.81193 * 18 17 16 38 38 H 1.08001 * 120.50303 * 359.97438 * 22 21 19 39 39 H 1.07999 * 119.55420 * 180.25307 * 23 22 21 40 40 H 1.08000 * 119.55065 * 179.97438 * 25 24 23 41 41 H 1.08009 * 120.49831 * 179.97438 * 26 25 24 42 42 H 1.08006 * 120.12221 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 8 5.4505 -2.6365 -0.0021 12 6 6.0675 -3.8474 -0.0027 13 6 5.3103 -5.0121 -0.0028 14 6 5.9309 -6.2481 -0.0028 15 6 7.3074 -6.3342 -0.0036 16 6 8.0798 -5.1675 -0.0039 17 6 9.5480 -5.2536 -0.0042 18 6 10.1771 -6.0728 0.8676 19 6 9.4306 -6.6833 1.9654 20 8 8.2733 -6.3648 2.1655 21 6 10.0827 -7.6904 2.8350 22 6 11.4099 -8.0750 2.6190 23 6 11.9801 -9.0130 3.4572 24 7 11.2876 -9.5510 4.4417 25 6 10.0331 -9.2209 4.6766 26 6 9.3863 -8.2873 3.8908 27 6 7.4492 -3.9190 -0.0033 28 1 -0.4851 0.8400 -0.0004 29 1 3.8752 -0.6803 0.8887 30 1 3.8745 -0.6800 -0.8911 31 1 3.6578 -3.1505 -0.8907 32 1 3.6585 -3.1501 0.8892 33 1 4.2319 -4.9521 -0.0028 34 1 5.3355 -7.1492 -0.0032 35 1 7.7886 -7.3011 -0.0085 36 1 10.1234 -4.6623 -0.7010 37 1 11.2316 -6.2760 0.7529 38 1 11.9816 -7.6422 1.8114 39 1 13.0056 -9.3135 3.3011 40 1 9.5037 -9.6874 5.4942 41 1 8.3582 -8.0220 4.0888 42 1 8.0388 -3.0141 -0.0037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588386411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:01 Heat of formation + Delta-G solvation = -7.246301 kcal Electronic energy + Delta-G solvation = -24830.191092 eV Core-core repulsion = 21126.665444 eV Total energy + Delta-G solvation = -3703.525648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61615 -41.01084 -40.04183 -38.38036 -35.47933 -34.76326 -33.78623 -32.96272 -32.26473 -31.28847 -30.20733 -27.29865 -26.68766 -24.69207 -24.08349 -23.53376 -22.81787 -21.94609 -20.28879 -19.25646 -18.73923 -18.17908 -17.19159 -17.06421 -17.01724 -16.89702 -16.58482 -16.28237 -16.18800 -15.63244 -15.39284 -15.02600 -14.76755 -14.75023 -14.57020 -14.45456 -14.37159 -14.12080 -13.82198 -13.19332 -13.17397 -12.68092 -12.64959 -12.50557 -12.19548 -12.02251 -11.81048 -11.66019 -11.45280 -11.11131 -10.91852 -10.83845 -10.78495 -10.43015 -10.16828 -9.57732 -8.94191 -8.37154 -6.44344 -0.75556 -0.00144 0.13016 0.51754 0.81150 1.34201 1.35903 1.48794 2.02981 2.30341 2.31339 2.82585 2.88044 2.90403 2.97504 3.52167 3.67997 3.78660 3.85865 4.02561 4.08663 4.10474 4.13718 4.18020 4.19115 4.24171 4.38832 4.50925 4.57614 4.62396 4.68167 4.81259 4.85476 4.97342 5.02519 5.08790 5.12786 5.26680 5.29009 5.36965 5.44493 5.51064 5.58668 5.65434 5.82747 6.13540 6.48738 6.51898 6.60985 6.92365 7.20766 8.78586 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.002044 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.219893 B =13692.247406 C =13931.270989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.539 4.539 8 H 0.040 0.960 9 C -0.005 4.005 10 C 0.087 3.913 11 O -0.335 6.335 12 C 0.104 3.896 13 C -0.217 4.217 14 C -0.090 4.090 15 C -0.108 4.108 16 C -0.039 4.039 17 C -0.009 4.009 18 C -0.224 4.224 19 C 0.406 3.594 20 O -0.463 6.463 21 C -0.126 4.126 22 C -0.117 4.117 23 C 0.085 3.915 24 N -0.494 5.494 25 C 0.084 3.916 26 C -0.137 4.137 27 C -0.148 4.148 28 H 0.271 0.729 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.121 0.879 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.177 0.823 37 H 0.186 0.814 38 H 0.183 0.817 39 H 0.193 0.807 40 H 0.176 0.824 41 H 0.135 0.865 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.560 -18.655 2.332 35.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.576 4.576 8 H 0.058 0.942 9 C -0.043 4.043 10 C 0.013 3.987 11 O -0.249 6.249 12 C 0.059 3.941 13 C -0.236 4.236 14 C -0.108 4.108 15 C -0.126 4.126 16 C -0.039 4.039 17 C -0.027 4.027 18 C -0.242 4.242 19 C 0.287 3.713 20 O -0.341 6.341 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.072 4.072 24 N -0.204 5.204 25 C -0.072 4.072 26 C -0.157 4.157 27 C -0.167 4.167 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.195 0.805 37 H 0.203 0.797 38 H 0.200 0.800 39 H 0.209 0.791 40 H 0.193 0.807 41 H 0.153 0.847 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 30.252 -18.803 2.977 35.743 hybrid contribution -1.456 1.173 -0.251 1.887 sum 28.796 -17.629 2.726 33.874 Atomic orbital electron populations 1.70025 1.08102 1.28560 1.51433 1.25904 0.95676 1.03393 0.93581 0.85651 0.79354 0.78146 0.79518 1.18719 1.20361 1.17518 1.21102 0.90512 0.93891 1.52140 0.94156 1.19438 0.94384 0.92572 0.97869 1.22648 0.76030 0.99611 1.00437 1.86020 1.22647 1.27675 1.88580 1.19271 0.93174 0.84479 0.97219 1.21504 1.00363 0.93071 1.08615 1.20988 0.95212 0.96723 0.97869 1.21110 0.93274 0.97489 1.00747 1.19040 0.94541 0.91844 0.98507 1.22940 0.90828 0.92768 0.96177 1.23676 1.03222 1.01090 0.96182 1.21028 0.86572 0.79491 0.84217 1.90823 1.18889 1.56179 1.68188 1.21097 0.96383 0.98648 0.97399 1.22824 0.93461 0.96711 1.00653 1.23421 1.01293 0.92671 0.89773 1.67623 1.08412 1.25349 1.19043 1.23042 0.90741 0.94561 0.98836 1.22502 1.01785 0.96489 0.94915 1.20653 0.90848 0.98625 1.06532 0.92047 0.95502 0.95255 0.92425 0.92957 0.86116 0.84275 0.85339 0.80537 0.79686 0.79968 0.79063 0.80722 0.84660 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.95 44.71 27.47 68.60 1.88 46.59 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 7 C -0.54 -31.58 9.66 25.60 0.25 -31.34 16 8 H 0.04 2.56 7.99 -2.91 -0.02 2.53 16 9 C -0.01 -0.26 4.41 29.85 0.13 -0.12 16 10 C 0.09 3.80 4.68 71.98 0.34 4.14 16 11 O -0.33 -13.65 10.13 -92.52 -0.94 -14.59 16 12 C 0.10 3.67 6.68 22.46 0.15 3.82 16 13 C -0.22 -7.18 9.04 22.45 0.20 -6.98 16 14 C -0.09 -2.47 10.02 22.21 0.22 -2.25 16 15 C -0.11 -2.62 6.77 22.60 0.15 -2.47 16 16 C -0.04 -0.91 4.34 -20.16 -0.09 -1.00 16 17 C -0.01 -0.12 9.79 23.88 0.23 0.11 16 18 C -0.22 -2.32 9.43 23.61 0.22 -2.10 16 19 C 0.41 7.05 6.31 26.96 0.17 7.22 16 20 O -0.46 -12.09 12.57 -4.32 -0.05 -12.14 16 21 C -0.13 -1.85 5.91 -19.85 -0.12 -1.97 16 22 C -0.12 -0.94 9.53 22.63 0.22 -0.72 16 23 C 0.09 0.81 11.17 84.66 0.95 1.76 16 24 N -0.49 -7.57 10.34 -196.04 -2.03 -9.59 16 25 C 0.08 1.24 11.17 84.66 0.95 2.19 16 26 C -0.14 -2.26 9.68 22.63 0.22 -2.04 16 27 C -0.15 -4.28 9.74 22.69 0.22 -4.06 16 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 30 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 31 H 0.06 2.44 7.65 -2.39 -0.02 2.42 16 32 H 0.05 2.27 7.66 -2.39 -0.02 2.25 16 33 H 0.12 4.09 6.28 -2.91 -0.02 4.08 16 34 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.13 2.59 7.47 -2.91 -0.02 2.57 16 36 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.19 0.15 6.45 -2.91 -0.02 0.13 16 38 H 0.18 -0.07 6.38 -2.91 -0.02 -0.09 16 39 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 40 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.14 2.41 7.75 -2.91 -0.02 2.39 16 42 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -77.68 360.01 5.02 -72.66 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.98 Total: 10.25 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 4.88 Total: -34.60 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.73 Total: -68.17 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.99 Total: -26.73 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -77.68 5.02 -72.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588386411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.414 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds