Wall clock time and date at job start Tue Mar 31 2020 13:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38274 * 119.92275 * 2 1 4 4 C 1.38266 * 119.82950 * 179.79312 * 3 2 1 5 5 C 1.37866 * 120.23102 * 0.45937 * 4 3 2 6 6 C 1.39636 * 120.28154 * 359.79827 * 5 4 3 7 7 C 1.38125 * 119.92292 * 180.27649 * 2 1 3 8 8 C 1.51216 * 130.99269 * 359.97438 * 7 2 1 9 9 C 1.53745 * 104.54171 * 180.02562 * 8 7 2 10 10 N 1.39575 * 129.32837 * 179.97438 * 6 5 4 11 11 S 1.65604 * 124.95565 * 359.97438 * 10 6 5 12 12 O 1.42096 * 104.27697 * 26.05535 * 11 10 6 13 13 O 1.42105 * 104.27371 * 153.90908 * 11 10 6 14 14 C 1.81402 * 104.45004 * 269.97941 * 11 10 6 15 15 C 1.52994 * 109.46817 * 180.02562 * 14 11 10 16 16 C 1.53001 * 109.47201 * 299.99622 * 15 14 11 17 17 C 1.52999 * 109.47669 * 59.99755 * 15 14 11 18 18 C 1.50704 * 109.47078 * 180.02562 * 15 14 11 19 19 H 1.07996 * 120.00070 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99869 * 180.02562 * 18 15 14 21 21 N 1.31508 * 120.00394 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99529 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47155 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47125 * 120.00024 * 22 20 18 25 25 H 1.48501 * 109.46773 * 239.99588 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.72285 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72385 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72366 * 1 2 3 29 29 H 1.07994 * 120.08609 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.88310 * 180.23680 * 4 3 2 31 31 H 1.08002 * 119.86255 * 179.76884 * 5 4 3 32 32 H 1.09002 * 110.42376 * 298.76245 * 8 7 2 33 33 H 1.09001 * 110.42203 * 61.22861 * 8 7 2 34 34 H 1.09003 * 110.30303 * 118.93004 * 9 8 7 35 35 H 1.09006 * 110.29409 * 241.06547 * 9 8 7 36 36 H 1.08997 * 109.47104 * 300.00180 * 14 11 10 37 37 H 1.08993 * 109.47212 * 60.00156 * 14 11 10 38 38 H 1.09004 * 109.46754 * 60.00621 * 16 15 14 39 39 H 1.09001 * 109.47412 * 180.02562 * 16 15 14 40 40 H 1.08993 * 109.47324 * 300.00330 * 16 15 14 41 41 H 1.09009 * 109.46590 * 60.00179 * 17 15 14 42 42 H 1.09003 * 109.47536 * 179.97438 * 17 15 14 43 43 H 1.08994 * 109.47038 * 300.00412 * 17 15 14 44 44 H 0.97006 * 120.00179 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5794 1.1962 0.0043 5 6 4.2717 0.0039 -0.0009 6 6 3.5824 -1.2105 -0.0064 7 6 2.1960 -1.1971 -0.0058 8 6 1.7016 -2.6261 -0.0122 9 6 2.9818 -3.4775 -0.0159 10 7 4.0847 -2.5127 -0.0126 11 16 5.6925 -2.9095 -0.0155 12 8 6.3295 -1.7951 0.5939 13 8 5.7367 -4.1970 0.5843 14 6 6.1305 -3.0106 -1.7730 15 6 7.6099 -3.3759 -1.9095 16 6 8.4648 -2.3031 -1.2318 17 6 7.8652 -4.7285 -1.2415 18 6 7.9741 -3.4593 -3.3695 19 1 7.2252 -3.2711 -4.1244 20 6 9.2632 -3.7770 -3.7414 21 7 10.1752 -4.0067 -2.8221 22 14 9.7144 -3.8811 -5.5512 23 1 8.5174 -3.5819 -6.3777 24 1 10.7835 -2.8954 -5.8523 25 1 10.2007 -5.2493 -5.8621 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5096 29 1 1.6570 2.1338 -0.0004 30 1 4.1190 2.1317 0.0082 31 1 5.3517 0.0091 -0.0013 32 1 1.1131 -2.8290 0.8826 33 1 1.1123 -2.8207 -0.9082 34 1 3.0229 -4.1027 0.8760 35 1 3.0227 -4.0948 -0.9134 36 1 5.5218 -3.7751 -2.2557 37 1 5.9484 -2.0472 -2.2488 38 1 8.2015 -2.2423 -0.1757 39 1 9.5188 -2.5630 -1.3294 40 1 8.2830 -1.3395 -1.7075 41 1 7.2562 -5.4928 -1.7245 42 1 8.9191 -4.9889 -1.3392 43 1 7.6019 -4.6677 -0.1856 44 1 11.0822 -4.2298 -3.0838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590745957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:07 Heat of formation + Delta-G solvation = -45.072881 kcal Electronic energy + Delta-G solvation = -26344.760874 eV Core-core repulsion = 22775.038893 eV Total energy + Delta-G solvation = -3569.721980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51862 -36.91445 -36.59530 -36.34361 -35.47315 -33.24598 -31.72425 -30.31682 -29.32513 -26.75264 -26.60241 -25.78738 -25.28220 -22.93717 -22.20432 -21.22052 -19.50234 -18.54711 -17.36795 -16.34893 -16.14402 -16.06274 -15.69675 -15.14947 -15.08566 -14.92724 -14.59903 -13.71453 -13.44378 -13.25116 -13.13664 -12.86582 -12.59015 -12.57571 -12.46536 -12.37203 -12.23522 -12.07703 -11.79368 -11.61187 -11.40722 -11.15642 -11.12856 -11.01165 -10.79975 -10.68200 -10.51357 -10.35878 -10.33364 -10.13000 -9.72509 -9.58115 -8.77850 -8.59231 -8.45296 -7.81488 -6.08286 -4.20515 0.56121 1.37038 1.45463 2.82075 3.22449 3.31025 3.33795 3.72932 4.18921 4.24587 4.26904 4.34146 4.68759 4.83439 4.93914 4.96946 5.06443 5.16998 5.29676 5.34586 5.45861 5.49930 5.53841 5.58782 5.62486 5.73240 5.78219 5.83405 5.88059 6.20348 6.28011 6.37912 6.52246 6.61469 6.63005 6.65989 6.72129 6.82573 6.96132 7.09505 7.24514 7.43321 7.63211 7.91804 8.03346 8.26673 8.78178 9.45289 10.93164 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.003854 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.525703 B = 7263.236436 C = 7581.954850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.048 4.048 3 C -0.153 4.153 4 C -0.082 4.082 5 C -0.158 4.158 6 C 0.175 3.825 7 C -0.142 4.142 8 C -0.078 4.078 9 C 0.112 3.888 10 N -0.946 5.946 11 S 2.588 3.412 12 O -0.946 6.946 13 O -0.950 6.950 14 C -0.574 4.574 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.502 4.502 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.897 3.103 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.027 0.973 39 H 0.097 0.903 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.026 0.974 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.771 6.114 4.766 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.049 4.049 3 C -0.172 4.172 4 C -0.101 4.101 5 C -0.179 4.179 6 C 0.077 3.923 7 C -0.147 4.147 8 C -0.117 4.117 9 C -0.012 4.012 10 N -0.766 5.766 11 S 2.689 3.311 12 O -0.937 6.937 13 O -0.940 6.940 14 C -0.708 4.708 15 C 0.080 3.920 16 C -0.222 4.222 17 C -0.222 4.222 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.046 0.954 39 H 0.115 0.885 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.116 0.884 43 H 0.045 0.955 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.958 5.768 5.610 18.770 hybrid contribution 0.190 -0.081 -1.666 1.678 sum -16.768 5.687 3.945 18.140 Atomic orbital electron populations 1.20757 0.91276 1.02643 1.02187 1.19146 0.95593 0.91266 0.98884 1.20852 0.94174 0.96965 1.05252 1.20844 0.94017 0.97249 0.97974 1.21102 1.01810 0.89761 1.05272 1.18074 0.92981 0.84456 0.96739 1.19917 0.92488 0.94609 1.07679 1.21032 0.96912 0.90422 1.03285 1.21886 0.84681 0.91303 1.03335 1.56736 1.25282 1.10239 1.84366 1.06160 0.70654 0.74323 0.79927 1.93534 1.71975 1.52858 1.75331 1.93557 1.83927 1.40864 1.75691 1.30534 1.10655 1.10156 1.19479 1.17975 0.82981 0.92945 0.98131 1.22284 1.05565 0.97932 0.96395 1.22290 1.05674 0.97848 0.96393 1.20957 0.95448 1.48035 0.89705 0.92177 1.24937 0.96295 0.94781 0.97678 1.69804 1.03061 1.47055 1.32195 0.86462 0.78501 0.77750 0.84850 1.19800 1.20868 1.20893 0.91241 0.91622 0.91552 0.85910 0.85369 0.83603 0.89521 0.89415 0.89519 0.90012 0.86199 0.86056 0.95420 0.88481 0.94324 0.94382 0.88437 0.95486 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.88 36.01 0.36 -0.51 16 2 C -0.05 -0.54 5.88 -104.65 -0.61 -1.15 16 3 C -0.15 -1.69 9.71 -39.56 -0.38 -2.08 16 4 C -0.08 -1.03 10.02 -39.71 -0.40 -1.43 16 5 C -0.16 -2.44 9.38 -39.20 -0.37 -2.80 16 6 C 0.18 2.71 6.59 -83.66 -0.55 2.16 16 7 C -0.14 -1.83 6.07 -104.26 -0.63 -2.46 16 8 C -0.08 -0.80 6.33 -27.24 -0.17 -0.97 16 9 C 0.11 1.39 7.08 -3.64 -0.03 1.37 16 10 N -0.95 -15.06 3.40 -58.12 -0.20 -15.26 16 11 S 2.59 49.91 4.59 -107.50 -0.49 49.42 16 12 O -0.95 -19.98 12.87 -57.54 -0.74 -20.72 16 13 O -0.95 -20.12 15.18 -57.54 -0.87 -20.99 16 14 C -0.57 -11.41 5.12 37.15 0.19 -11.22 16 15 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 16 C -0.16 -4.01 7.77 37.16 0.29 -3.72 16 17 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 18 C -0.50 -13.12 8.01 -34.44 -0.28 -13.39 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -23.91 9.35 55.43 0.52 -23.39 16 22 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.46 7.71 -51.93 -0.40 0.06 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.15 2.43 6.11 -52.49 -0.32 2.11 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 37 H 0.12 2.24 8.14 -51.93 -0.42 1.82 16 38 H 0.03 0.64 5.47 -51.93 -0.28 0.35 16 39 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 43 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 44 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -31.36 351.95 -10.51 -41.87 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.53 Total: 4.70 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: -2.47 Total: -36.42 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.32 Total: -38.65 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.61 Total: -41.71 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 49.91 SS G_CDS: -0.49 Total: 49.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.36 -10.51 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.207 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds