Wall clock time and date at job start Tue Mar 31 2020 13:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38274 * 119.92275 * 2 1 4 4 C 1.38266 * 119.82950 * 179.79312 * 3 2 1 5 5 C 1.37866 * 120.23102 * 0.45937 * 4 3 2 6 6 C 1.39636 * 120.28154 * 359.79827 * 5 4 3 7 7 C 1.38125 * 119.92292 * 180.27649 * 2 1 3 8 8 C 1.51216 * 130.99269 * 359.97438 * 7 2 1 9 9 C 1.53745 * 104.54171 * 180.02562 * 8 7 2 10 10 N 1.39575 * 129.32837 * 179.97438 * 6 5 4 11 11 S 1.65604 * 124.95565 * 359.97438 * 10 6 5 12 12 O 1.42096 * 104.27697 * 26.05535 * 11 10 6 13 13 O 1.42105 * 104.27371 * 153.90908 * 11 10 6 14 14 C 1.81402 * 104.45004 * 269.97941 * 11 10 6 15 15 C 1.52994 * 109.46817 * 180.02562 * 14 11 10 16 16 C 1.53001 * 109.47201 * 299.99622 * 15 14 11 17 17 C 1.52999 * 109.47669 * 59.99755 * 15 14 11 18 18 C 1.50704 * 109.47078 * 180.02562 * 15 14 11 19 19 H 1.07996 * 120.00070 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99869 * 180.02562 * 18 15 14 21 21 N 1.31508 * 120.00394 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99529 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47155 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47125 * 120.00024 * 22 20 18 25 25 H 1.48501 * 109.46773 * 239.99588 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.72285 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72385 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72366 * 1 2 3 29 29 H 1.07994 * 120.08609 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.88310 * 180.23680 * 4 3 2 31 31 H 1.08002 * 119.86255 * 179.76884 * 5 4 3 32 32 H 1.09002 * 110.42376 * 298.76245 * 8 7 2 33 33 H 1.09001 * 110.42203 * 61.22861 * 8 7 2 34 34 H 1.09003 * 110.30303 * 118.93004 * 9 8 7 35 35 H 1.09006 * 110.29409 * 241.06547 * 9 8 7 36 36 H 1.08997 * 109.47104 * 300.00180 * 14 11 10 37 37 H 1.08993 * 109.47212 * 60.00156 * 14 11 10 38 38 H 1.09004 * 109.46754 * 60.00621 * 16 15 14 39 39 H 1.09001 * 109.47412 * 180.02562 * 16 15 14 40 40 H 1.08993 * 109.47324 * 300.00330 * 16 15 14 41 41 H 1.09009 * 109.46590 * 60.00179 * 17 15 14 42 42 H 1.09003 * 109.47536 * 179.97438 * 17 15 14 43 43 H 1.08994 * 109.47038 * 300.00412 * 17 15 14 44 44 H 0.97006 * 120.00179 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5794 1.1962 0.0043 5 6 4.2717 0.0039 -0.0009 6 6 3.5824 -1.2105 -0.0064 7 6 2.1960 -1.1971 -0.0058 8 6 1.7016 -2.6261 -0.0122 9 6 2.9818 -3.4775 -0.0159 10 7 4.0847 -2.5127 -0.0126 11 16 5.6925 -2.9095 -0.0155 12 8 6.3295 -1.7951 0.5939 13 8 5.7367 -4.1970 0.5843 14 6 6.1305 -3.0106 -1.7730 15 6 7.6099 -3.3759 -1.9095 16 6 8.4648 -2.3031 -1.2318 17 6 7.8652 -4.7285 -1.2415 18 6 7.9741 -3.4593 -3.3695 19 1 7.2252 -3.2711 -4.1244 20 6 9.2632 -3.7770 -3.7414 21 7 10.1752 -4.0067 -2.8221 22 14 9.7144 -3.8811 -5.5512 23 1 8.5174 -3.5819 -6.3777 24 1 10.7835 -2.8954 -5.8523 25 1 10.2007 -5.2493 -5.8621 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5096 29 1 1.6570 2.1338 -0.0004 30 1 4.1190 2.1317 0.0082 31 1 5.3517 0.0091 -0.0013 32 1 1.1131 -2.8290 0.8826 33 1 1.1123 -2.8207 -0.9082 34 1 3.0229 -4.1027 0.8760 35 1 3.0227 -4.0948 -0.9134 36 1 5.5218 -3.7751 -2.2557 37 1 5.9484 -2.0472 -2.2488 38 1 8.2015 -2.2423 -0.1757 39 1 9.5188 -2.5630 -1.3294 40 1 8.2830 -1.3395 -1.7075 41 1 7.2562 -5.4928 -1.7245 42 1 8.9191 -4.9889 -1.3392 43 1 7.6019 -4.6677 -0.1856 44 1 11.0822 -4.2298 -3.0838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590745957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:06 Heat of formation + Delta-G solvation = -62.779427 kcal Electronic energy + Delta-G solvation = -26345.528687 eV Core-core repulsion = 22775.038893 eV Total energy + Delta-G solvation = -3570.489794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48748 -38.42264 -38.24096 -37.61619 -37.09906 -34.13364 -33.69690 -31.26768 -30.25567 -28.46603 -27.76998 -27.38736 -27.30670 -23.86737 -23.26897 -22.16668 -21.35505 -19.92612 -18.73518 -17.95448 -17.52907 -17.39333 -16.83900 -16.59932 -16.40489 -16.37202 -15.84641 -14.99617 -14.83959 -14.51836 -14.41358 -14.37617 -13.97256 -13.91795 -13.66432 -13.43851 -13.27737 -13.12308 -12.99154 -12.93700 -12.86271 -12.83858 -12.73474 -12.60176 -12.27493 -12.25700 -12.14209 -12.06577 -11.67331 -11.65410 -11.54209 -11.25805 -10.67242 -10.46714 -9.49362 -8.85838 -8.07609 -6.26766 -0.94101 0.42678 0.47320 1.41228 1.44124 1.47713 1.54061 2.41009 2.62069 2.85677 2.92488 3.15282 3.25813 3.67963 3.87578 3.98465 4.00487 4.10407 4.15834 4.24172 4.49548 4.49953 4.56452 4.63532 4.70426 4.75990 4.77788 4.88661 4.91608 4.93309 4.98914 5.03435 5.04988 5.13014 5.29474 5.30092 5.43287 5.47034 5.55060 5.59822 5.65148 5.71508 5.90178 6.03978 6.15715 6.27630 6.77312 7.41851 8.92726 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.003854 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.525703 B = 7263.236436 C = 7581.954850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.148 4.148 4 C -0.089 4.089 5 C -0.190 4.190 6 C 0.139 3.861 7 C -0.144 4.144 8 C -0.071 4.071 9 C 0.094 3.906 10 N -0.946 5.946 11 S 2.608 3.392 12 O -0.973 6.973 13 O -0.973 6.973 14 C -0.577 4.577 15 C 0.070 3.930 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.019 3.981 21 N -0.907 5.907 22 Si 0.956 3.044 23 H -0.266 1.266 24 H -0.282 1.282 25 H -0.281 1.281 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.208 6.827 4.017 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.050 4.050 3 C -0.167 4.167 4 C -0.108 4.108 5 C -0.212 4.212 6 C 0.042 3.958 7 C -0.149 4.149 8 C -0.108 4.108 9 C -0.029 4.029 10 N -0.770 5.770 11 S 2.710 3.290 12 O -0.963 6.963 13 O -0.964 6.964 14 C -0.710 4.710 15 C 0.068 3.932 16 C -0.217 4.217 17 C -0.218 4.218 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.208 1.208 25 H -0.207 1.207 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.393 6.481 4.856 21.942 hybrid contribution 1.161 -0.218 -1.380 1.816 sum -19.233 6.263 3.476 20.523 Atomic orbital electron populations 1.20836 0.88347 1.04072 1.03368 1.19637 0.97672 0.90552 0.97110 1.21284 0.93538 0.98522 1.03320 1.21118 0.95141 0.96914 0.97611 1.21144 1.00961 0.91367 1.07711 1.18367 0.94464 0.83873 0.99098 1.20307 0.91330 0.96537 1.06734 1.21134 0.95961 0.88060 1.05687 1.22316 0.84707 0.91461 1.04395 1.56306 1.24526 1.11529 1.84637 1.05194 0.71380 0.73314 0.79143 1.93497 1.73660 1.53483 1.75653 1.93515 1.84936 1.41988 1.75940 1.30447 1.08178 1.11284 1.21113 1.17956 0.85577 0.92407 0.97245 1.22205 1.04365 0.98270 0.96858 1.22213 1.04250 0.98463 0.96837 1.21267 0.95731 1.47971 0.90790 0.91980 1.25677 0.96369 0.94599 1.01387 1.69937 1.03242 1.47533 1.33835 0.85529 0.78232 0.77564 0.80452 1.19039 1.20820 1.20698 0.89993 0.90454 0.89991 0.82719 0.83652 0.86208 0.87241 0.86710 0.89323 0.88349 0.84325 0.85075 0.95024 0.90711 0.94172 0.93825 0.90679 0.95107 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.88 71.24 0.70 -0.49 16 2 C -0.05 -0.93 5.88 -19.88 -0.12 -1.05 16 3 C -0.15 -2.83 9.71 22.28 0.22 -2.62 16 4 C -0.09 -2.15 10.02 22.19 0.22 -1.93 16 5 C -0.19 -5.97 9.38 22.52 0.21 -5.76 16 6 C 0.14 4.22 6.59 38.34 0.25 4.47 16 7 C -0.14 -3.36 6.07 -19.63 -0.12 -3.48 16 8 C -0.07 -1.20 6.33 30.26 0.19 -1.01 16 9 C 0.09 2.17 7.08 86.62 0.61 2.79 16 10 N -0.95 -29.78 3.40 -337.79 -1.15 -30.92 16 11 S 2.61 102.33 4.59 -56.49 -0.26 102.08 16 12 O -0.97 -42.71 12.87 -127.65 -1.64 -44.35 16 13 O -0.97 -41.75 15.18 -127.65 -1.94 -43.69 16 14 C -0.58 -23.07 5.12 71.98 0.37 -22.71 16 15 C 0.07 3.46 0.52 -52.93 -0.03 3.44 16 16 C -0.16 -8.05 7.77 71.98 0.56 -7.49 16 17 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 18 C -0.52 -27.28 8.01 25.60 0.21 -27.07 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 20 C 0.02 1.03 5.15 84.66 0.44 1.46 16 21 N -0.91 -50.23 9.35 21.45 0.20 -50.03 16 22 Si 0.96 42.17 29.54 68.60 2.03 44.20 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.69 7.71 -2.39 -0.02 0.68 16 28 H 0.08 0.67 8.08 -2.38 -0.02 0.65 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.12 4.28 6.11 -2.91 -0.02 4.26 16 32 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 37 H 0.13 4.90 8.14 -2.39 -0.02 4.88 16 38 H 0.03 1.53 5.47 -2.38 -0.01 1.51 16 39 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.07 4.08 6.07 -2.39 -0.01 4.07 16 43 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 44 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 Total: -1.00 -69.33 351.95 2.51 -66.82 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 1.00 Total: 24.79 kcal Atomic # 6 Polarization: -73.16 SS G_CDS: 4.28 Total: -68.88 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -0.95 Total: -80.96 kcal Atomic # 8 Polarization: -84.46 SS G_CDS: -3.58 Total: -88.04 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 102.33 SS G_CDS: -0.26 Total: 102.08 kcal Total: -69.33 2.51 -66.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.036 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds