Wall clock time and date at job start Tue Mar 31 2020 13:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38298 * 119.88388 * 2 1 4 4 C 1.38227 * 119.83252 * 180.02562 * 3 2 1 5 5 C 1.38174 * 120.15390 * 359.97438 * 4 3 2 6 6 C 1.38601 * 120.47064 * 0.02562 * 5 4 3 7 7 C 1.37827 * 119.88132 * 180.02562 * 2 1 3 8 8 N 1.39575 * 111.64817 * 180.02562 * 6 5 4 9 9 S 1.65595 * 124.95604 * 179.97438 * 8 6 5 10 10 O 1.42098 * 104.28033 * 206.07191 * 9 8 6 11 11 O 1.42098 * 104.28020 * 333.93383 * 9 8 6 12 12 C 1.81401 * 104.44883 * 90.00445 * 9 8 6 13 13 C 1.52999 * 109.47350 * 180.02562 * 12 9 8 14 14 C 1.52996 * 109.47042 * 299.99723 * 13 12 9 15 15 C 1.52998 * 109.47275 * 59.99735 * 13 12 9 16 16 C 1.50708 * 109.47181 * 179.97438 * 13 12 9 17 17 H 1.08002 * 119.99943 * 357.68938 * 16 13 12 18 18 C 1.37877 * 119.99998 * 177.69618 * 16 13 12 19 19 N 1.31516 * 119.99745 * 6.57760 * 18 16 13 20 20 Si 1.86797 * 119.99966 * 186.58210 * 18 16 13 21 21 H 1.48495 * 109.47166 * 84.99192 * 20 18 16 22 22 H 1.48503 * 109.47049 * 204.99343 * 20 18 16 23 23 H 1.48505 * 109.46937 * 324.99349 * 20 18 16 24 24 C 1.46542 * 110.08857 * 0.02562 * 8 6 5 25 25 C 1.51219 * 130.98718 * 179.71332 * 5 4 3 26 26 H 1.09005 * 109.47177 * 90.00062 * 1 2 3 27 27 H 1.08999 * 109.47265 * 210.00203 * 1 2 3 28 28 H 1.08999 * 109.47169 * 329.99702 * 1 2 3 29 29 H 1.07999 * 120.08585 * 0.04538 * 3 2 1 30 30 H 1.08005 * 119.92479 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.86133 * 359.97438 * 7 2 1 32 32 H 1.09001 * 109.46814 * 299.99971 * 12 9 8 33 33 H 1.08995 * 109.47347 * 59.99710 * 12 9 8 34 34 H 1.08999 * 109.47323 * 66.66961 * 14 13 12 35 35 H 1.09003 * 109.47343 * 186.66879 * 14 13 12 36 36 H 1.09002 * 109.47134 * 306.66806 * 14 13 12 37 37 H 1.09001 * 109.47156 * 60.00048 * 15 13 12 38 38 H 1.08997 * 109.47250 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.46878 * 300.00328 * 15 13 12 40 40 H 0.97001 * 119.99662 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.29924 * 118.92375 * 24 8 6 42 42 H 1.08996 * 110.29907 * 240.97290 * 24 8 6 43 43 H 1.08997 * 110.41907 * 298.76005 * 25 5 4 44 44 H 1.09000 * 110.42092 * 61.23277 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1991 0.0000 4 6 3.5784 1.1979 -0.0005 5 6 4.2714 0.0025 -0.0005 6 6 3.5904 -1.2047 -0.0005 7 6 2.1937 -1.1950 -0.0005 8 7 4.4674 -2.2906 0.0000 9 16 4.0076 -3.8814 0.0008 10 8 5.0986 -4.5613 0.6064 11 8 2.7219 -3.8744 0.6059 12 6 3.8822 -4.3172 -1.7556 13 6 3.4584 -5.7812 -1.8889 14 6 4.4994 -6.6769 -1.2144 15 6 2.0995 -5.9823 -1.2152 16 6 3.3536 -6.1430 -3.3481 17 1 3.5313 -5.3930 -4.1046 18 6 3.0306 -7.4316 -3.7174 19 7 2.6878 -8.3116 -2.8021 20 14 3.0801 -7.9274 -5.5177 21 1 4.4641 -8.3206 -5.8850 22 1 2.1638 -9.0746 -5.7405 23 1 2.6515 -6.7810 -6.3588 24 6 5.8543 -1.8174 0.0011 25 6 5.7563 -0.2831 -0.0068 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6556 2.1341 0.0007 30 1 4.1180 2.1334 -0.0010 31 1 1.6495 -2.1279 -0.0005 32 1 3.1402 -3.6794 -2.2360 33 1 4.8501 -4.1735 -2.2356 34 1 4.4909 -6.4979 -0.1393 35 1 4.2611 -7.7223 -1.4106 36 1 5.4880 -6.4486 -1.6129 37 1 1.3578 -5.3442 -1.6957 38 1 1.7978 -7.0254 -1.3098 39 1 2.1749 -5.7204 -0.1598 40 1 2.4609 -9.2182 -3.0619 41 1 6.3712 -2.1634 0.8963 42 1 6.3730 -2.1648 -0.8924 43 1 6.2183 0.1253 -0.9055 44 1 6.2269 0.1303 0.8853 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590746012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:59 Heat of formation + Delta-G solvation = -63.341110 kcal Electronic energy + Delta-G solvation = -26393.709464 eV Core-core repulsion = 22823.195314 eV Total energy + Delta-G solvation = -3570.514150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43384 -38.43976 -38.23983 -37.78123 -37.10598 -33.72502 -33.65486 -31.60717 -30.38983 -28.46968 -27.77778 -27.30530 -27.19237 -23.96765 -23.40407 -21.80745 -21.37073 -20.09466 -18.95141 -17.97440 -17.43030 -17.36454 -16.80132 -16.54485 -16.34376 -16.20408 -15.79938 -14.99477 -14.84832 -14.69665 -14.51584 -14.49991 -14.02676 -13.90854 -13.51183 -13.35202 -13.26919 -13.11578 -13.05919 -12.96041 -12.88092 -12.83580 -12.70562 -12.60424 -12.37754 -12.29419 -12.18800 -12.06338 -11.67971 -11.66109 -11.50205 -11.18312 -10.71147 -10.43684 -9.57268 -8.81650 -8.07964 -6.26627 -0.93984 0.42426 0.48578 1.42918 1.44364 1.47899 1.52783 2.41252 2.62303 2.85588 2.92953 3.14470 3.24561 3.70093 3.87220 3.95628 3.99682 4.16299 4.17442 4.22047 4.43908 4.48626 4.56411 4.61994 4.74852 4.76155 4.79097 4.85902 4.87063 4.88114 4.98993 5.03251 5.04948 5.12198 5.28908 5.35156 5.38137 5.42171 5.48852 5.59376 5.64392 5.76854 5.89538 6.03630 6.15918 6.27919 6.76841 7.41610 8.92091 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.004150 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.836366 B = 6745.762088 C = 7271.618416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.071 4.071 5 C -0.148 4.148 6 C 0.138 3.862 7 C -0.186 4.186 8 N -0.947 5.947 9 S 2.608 3.392 10 O -0.974 6.974 11 O -0.973 6.973 12 C -0.577 4.577 13 C 0.071 3.929 14 C -0.157 4.157 15 C -0.159 4.159 16 C -0.520 4.520 17 H 0.062 0.938 18 C 0.021 3.979 19 N -0.906 5.906 20 Si 0.956 3.044 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.094 3.906 25 C -0.071 4.071 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.263 0.737 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 20.955 3.884 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.164 4.164 4 C -0.089 4.089 5 C -0.153 4.153 6 C 0.041 3.959 7 C -0.208 4.208 8 N -0.770 5.770 9 S 2.709 3.291 10 O -0.964 6.964 11 O -0.963 6.963 12 C -0.710 4.710 13 C 0.069 3.931 14 C -0.215 4.215 15 C -0.217 4.217 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.781 3.219 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.194 1.194 24 C -0.029 4.029 25 C -0.109 4.109 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.175 0.825 30 H 0.178 0.822 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.134 0.866 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.167 20.070 4.731 20.861 hybrid contribution -0.146 -1.097 -1.375 1.765 sum 3.022 18.972 3.356 19.502 Atomic orbital electron populations 1.20873 0.89508 1.03571 1.03265 1.19920 0.97296 0.92023 0.97339 1.21270 0.94146 0.97821 1.03145 1.20778 0.93912 0.96892 0.97336 1.20516 0.96393 0.92047 1.06343 1.18365 0.90725 0.87644 0.99169 1.21011 0.91471 1.00228 1.08105 1.56309 1.14310 1.21769 1.84654 1.05194 0.73360 0.71389 0.79152 1.93518 1.55282 1.71960 1.75674 1.93498 1.42052 1.84974 1.75826 1.30458 1.11358 1.08078 1.21119 1.17951 0.92217 0.85714 0.97249 1.22149 0.98348 1.04355 0.96628 1.22240 0.98663 1.04113 0.96709 1.21218 1.48155 0.95775 0.90751 0.91996 1.25669 0.94312 0.96607 1.01339 1.69943 1.45418 1.04738 1.34294 0.85606 0.77998 0.77812 0.80444 1.20007 1.21133 1.19354 1.22324 0.79522 0.96744 1.04355 1.21145 0.91552 0.92337 1.05827 0.90139 0.92409 0.88952 0.82544 0.82226 0.86413 0.85184 0.84266 0.95473 0.90754 0.93640 0.94305 0.90481 0.95170 0.92728 0.89370 0.88417 0.86618 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 10.00 71.24 0.71 -1.54 16 2 C -0.07 -1.60 5.87 -19.95 -0.12 -1.72 16 3 C -0.14 -2.72 9.71 22.28 0.22 -2.50 16 4 C -0.07 -1.27 10.03 22.25 0.22 -1.05 16 5 C -0.15 -3.38 6.23 -19.63 -0.12 -3.50 16 6 C 0.14 4.20 6.59 38.34 0.25 4.45 16 7 C -0.19 -5.93 9.02 22.52 0.20 -5.73 16 8 N -0.95 -29.89 3.40 -337.77 -1.15 -31.04 16 9 S 2.61 102.85 4.59 -56.49 -0.26 102.59 16 10 O -0.97 -41.93 15.32 -127.65 -1.96 -43.88 16 11 O -0.97 -43.04 12.87 -127.65 -1.64 -44.69 16 12 C -0.58 -23.14 5.11 71.98 0.37 -22.77 16 13 C 0.07 3.49 0.52 -52.93 -0.03 3.46 16 14 C -0.16 -7.85 7.58 71.98 0.55 -7.30 16 15 C -0.16 -8.10 7.79 71.98 0.56 -7.54 16 16 C -0.52 -27.32 8.01 25.60 0.20 -27.12 16 17 H 0.06 3.14 7.75 -2.91 -0.02 3.12 16 18 C 0.02 1.09 5.09 84.65 0.43 1.52 16 19 N -0.91 -50.09 9.39 21.45 0.20 -49.89 16 20 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.09 2.16 7.08 86.62 0.61 2.77 16 25 C -0.07 -1.18 6.94 30.27 0.21 -0.97 16 26 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 28 H 0.09 1.28 8.08 -2.39 -0.02 1.27 16 29 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.12 4.31 6.11 -2.91 -0.02 4.29 16 32 H 0.13 4.90 8.14 -2.39 -0.02 4.88 16 33 H 0.14 4.92 8.14 -2.39 -0.02 4.90 16 34 H 0.03 1.30 5.96 -2.39 -0.01 1.28 16 35 H 0.07 4.03 5.99 -2.39 -0.01 4.01 16 36 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 4.24 6.01 -2.39 -0.01 4.23 16 39 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 40 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -69.46 353.17 2.49 -66.97 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.99 Total: 25.40 kcal Atomic # 6 Polarization: -73.80 SS G_CDS: 4.28 Total: -69.53 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -0.95 Total: -80.93 kcal Atomic # 8 Polarization: -84.97 SS G_CDS: -3.60 Total: -88.57 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 102.85 SS G_CDS: -0.26 Total: 102.59 kcal Total: -69.46 2.49 -66.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.632 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds