Wall clock time and date at job start Tue Mar 31 2020 13:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00491 * 2 1 4 4 C 1.53788 * 113.61352 * 59.99684 * 3 2 1 5 5 C 1.53776 * 87.08251 * 219.93685 * 4 3 2 6 6 C 1.52996 * 113.61367 * 139.98167 * 5 4 3 7 7 C 1.52995 * 113.61464 * 270.80261 * 5 4 3 8 8 C 1.53781 * 87.17347 * 25.39003 * 5 4 3 9 9 S 1.65603 * 119.99585 * 179.97438 * 2 1 3 10 10 O 1.42097 * 106.40129 * 23.54326 * 9 2 1 11 11 O 1.42106 * 106.39931 * 156.46221 * 9 2 1 12 12 C 1.76200 * 107.22061 * 270.00138 * 9 2 1 13 13 C 1.38656 * 119.87711 * 269.72932 * 12 9 2 14 14 C 1.38613 * 120.50083 * 179.72041 * 13 12 9 15 15 C 1.37636 * 120.24779 * 0.54949 * 14 13 12 16 16 C 1.40702 * 119.74352 * 359.73304 * 15 14 13 17 17 C 1.41401 * 120.24182 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99762 * 155.24276 * 17 16 15 19 19 C 1.39941 * 119.99855 * 335.24689 * 17 16 15 20 20 N 1.30818 * 120.00071 * 342.24807 * 19 17 16 21 21 Si 1.86800 * 119.99823 * 162.25558 * 19 17 16 22 22 H 1.48500 * 109.47427 * 59.99214 * 21 19 17 23 23 H 1.48503 * 109.47253 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47131 * 299.99494 * 21 19 17 25 25 C 1.37592 * 119.87368 * 90.00116 * 12 9 2 26 26 H 1.09000 * 109.47140 * 89.99750 * 1 2 3 27 27 H 1.09000 * 109.47485 * 210.00106 * 1 2 3 28 28 H 1.09003 * 109.46773 * 330.00546 * 1 2 3 29 29 H 1.08995 * 112.84911 * 191.19315 * 3 2 1 30 30 H 1.09006 * 113.61217 * 105.38394 * 4 3 2 31 31 H 1.09001 * 113.68894 * 334.49676 * 4 3 2 32 32 H 1.09000 * 109.47067 * 181.52875 * 6 5 4 33 33 H 1.09002 * 109.47151 * 301.52447 * 6 5 4 34 34 H 1.09000 * 109.47489 * 61.52958 * 6 5 4 35 35 H 1.09005 * 109.47116 * 298.46651 * 7 5 4 36 36 H 1.09000 * 109.47661 * 58.46647 * 7 5 4 37 37 H 1.09002 * 109.47493 * 178.47137 * 7 5 4 38 38 H 1.09003 * 113.61494 * 89.16065 * 8 5 4 39 39 H 1.09004 * 113.61669 * 220.05979 * 8 5 4 40 40 H 1.08002 * 119.74496 * 0.02562 * 13 12 9 41 41 H 1.08002 * 119.87750 * 180.25479 * 14 13 12 42 42 H 1.07996 * 120.13141 * 179.74608 * 15 14 13 43 43 H 0.97007 * 119.99805 * 180.02562 * 20 19 17 44 44 H 1.08007 * 120.12978 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 1.8955 2.1545 1.2203 5 6 1.9153 3.3527 0.2567 6 6 0.8289 4.3903 0.5465 7 6 3.3014 3.9766 0.0830 8 6 1.5406 2.3638 -0.8598 9 16 2.2929 -1.4342 0.0006 10 8 1.4112 -2.4067 -0.5434 11 8 3.5759 -1.1571 -0.5439 12 6 2.5537 -1.8853 1.6839 13 6 3.6998 -1.4657 2.3418 14 6 3.9153 -1.8082 3.6675 15 6 2.9967 -2.5795 4.3425 16 6 1.8328 -3.0159 3.6832 17 6 0.8818 -3.8083 4.3666 18 1 -0.1486 -3.8141 4.0432 19 6 1.2758 -4.5849 5.4621 20 7 2.5413 -4.8596 5.6477 21 14 -0.0053 -5.2294 6.6591 22 1 -0.9694 -6.0951 5.9337 23 1 0.6647 -6.0189 7.7235 24 1 -0.7297 -4.0868 7.2714 25 6 1.6218 -2.6572 2.3388 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 3.2625 1.1424 -0.1950 30 1 2.6993 2.1726 1.9564 31 1 0.9181 1.9682 1.6654 32 1 0.8871 5.1925 -0.1891 33 1 -0.1509 3.9159 0.4899 34 1 0.9763 4.8016 1.5451 35 1 3.6531 4.3538 1.0434 36 1 3.9957 3.2223 -0.2872 37 1 3.2432 4.7984 -0.6308 38 1 0.4657 2.2341 -0.9856 39 1 2.0583 2.5508 -1.8006 40 1 4.4279 -0.8634 1.8186 41 1 4.8097 -1.4725 4.1714 42 1 3.1684 -2.8487 5.3741 43 1 2.8144 -5.3982 6.4069 44 1 0.7316 -2.9863 1.8232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591330706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:00 Heat of formation + Delta-G solvation = -61.730024 kcal Electronic energy + Delta-G solvation = -25913.683963 eV Core-core repulsion = 22343.239674 eV Total energy + Delta-G solvation = -3570.444288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.87684 -39.45457 -38.32699 -36.93271 -35.92773 -35.67673 -31.93075 -31.60009 -30.71656 -28.24396 -27.45621 -27.29746 -26.58842 -23.69256 -22.84120 -22.59960 -20.24889 -19.50415 -19.08145 -18.53319 -17.76790 -17.27515 -16.90766 -16.53420 -16.02349 -15.83170 -15.41635 -15.24612 -15.05138 -14.41028 -14.32526 -14.20963 -13.82314 -13.71116 -13.67725 -13.61378 -13.29621 -13.14612 -13.06874 -13.05570 -12.87901 -12.74951 -12.57864 -12.54211 -12.36384 -12.23387 -12.21142 -11.60907 -11.57658 -11.40787 -11.14268 -11.00413 -10.94888 -9.93138 -9.79896 -9.57352 -8.73828 -6.46429 -0.54498 0.39907 0.83387 1.36732 1.46291 1.49899 2.04838 2.17289 2.55302 2.75655 3.35657 3.48640 3.57310 3.60919 3.88208 3.92390 4.00214 4.27920 4.39557 4.42008 4.53482 4.66828 4.69442 4.81461 4.82483 4.87734 4.88353 4.90001 4.97113 5.01902 5.04338 5.05741 5.11948 5.18496 5.24349 5.30649 5.33719 5.39857 5.52398 5.55456 5.67882 5.74083 5.87086 5.92167 6.08902 6.50990 6.78715 6.83427 8.24369 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.003715 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.728800 B = 7535.426217 C = 7839.722566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.981 5.981 3 C 0.107 3.893 4 C -0.147 4.147 5 C -0.079 4.079 6 C -0.130 4.130 7 C -0.133 4.133 8 C -0.127 4.127 9 S 2.706 3.294 10 O -0.993 6.993 11 O -0.988 6.988 12 C -0.637 4.637 13 C -0.147 4.147 14 C -0.122 4.122 15 C -0.140 4.140 16 C 0.064 3.936 17 C -0.499 4.499 18 H 0.082 0.918 19 C 0.036 3.964 20 N -0.825 5.825 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 16.300 -6.440 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.819 5.819 3 C 0.002 3.998 4 C -0.186 4.186 5 C -0.080 4.080 6 C -0.187 4.187 7 C -0.190 4.190 8 C -0.166 4.166 9 S 2.801 3.199 10 O -0.983 6.983 11 O -0.978 6.978 12 C -0.726 4.726 13 C -0.168 4.168 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.061 3.939 17 C -0.528 4.528 18 H 0.100 0.900 19 C -0.179 4.179 20 N -0.451 5.451 21 Si 0.805 3.195 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.181 1.181 25 C -0.167 4.167 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.949 15.666 -7.058 17.434 hybrid contribution -0.200 -0.873 1.496 1.743 sum -3.149 14.794 -5.563 16.116 Atomic orbital electron populations 1.21682 0.77053 1.04039 1.03246 1.57193 1.15740 1.19981 1.89012 1.22797 0.96788 0.81017 0.99204 1.23604 1.02837 0.95481 0.96716 1.21622 0.97050 0.93664 0.95671 1.21676 0.97139 0.98097 1.01800 1.21667 0.94175 1.00816 1.02388 1.23548 1.02186 0.93171 0.97730 1.01204 0.72344 0.72574 0.73783 1.93483 1.66748 1.60248 1.77864 1.93460 1.41528 1.85029 1.77786 1.30320 1.04217 1.13241 1.24773 1.20404 0.96533 1.04363 0.95492 1.21129 0.99098 0.98920 0.94985 1.21630 0.96152 0.98342 0.99905 1.18034 0.93417 0.91249 0.91199 1.19855 0.96697 1.23610 1.12630 0.90036 1.26790 0.98150 0.94289 0.98686 1.69823 1.18802 1.29016 1.27423 0.85202 0.78182 0.78911 0.77175 1.18455 1.19092 1.18084 1.20813 0.99126 1.02257 0.94530 0.90736 0.91960 0.88361 0.86933 0.91614 0.89211 0.91571 0.92175 0.92479 0.91988 0.92838 0.90977 0.88077 0.90194 0.85475 0.85616 0.86905 0.89730 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.99 8.90 127.77 1.14 3.13 16 2 N -0.98 -28.37 3.39 -513.44 -1.74 -30.11 16 3 C 0.11 2.62 3.94 45.58 0.18 2.80 16 4 C -0.15 -3.17 6.77 31.12 0.21 -2.96 16 5 C -0.08 -1.30 1.39 -51.66 -0.07 -1.37 16 6 C -0.13 -1.72 9.18 71.98 0.66 -1.06 16 7 C -0.13 -2.03 9.07 71.98 0.65 -1.37 16 8 C -0.13 -2.26 6.65 31.18 0.21 -2.05 16 9 S 2.71 104.41 5.65 -56.49 -0.32 104.09 16 10 O -0.99 -43.11 16.34 -128.00 -2.09 -45.20 16 11 O -0.99 -40.45 15.89 -128.00 -2.03 -42.48 16 12 C -0.64 -28.52 5.97 22.22 0.13 -28.38 16 13 C -0.15 -6.43 9.53 22.46 0.21 -6.21 16 14 C -0.12 -5.54 10.02 22.22 0.22 -5.31 16 15 C -0.14 -7.22 8.70 22.73 0.20 -7.02 16 16 C 0.06 3.45 5.57 -21.29 -0.12 3.33 16 17 C -0.50 -26.50 9.05 23.46 0.21 -26.29 16 18 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 19 C 0.04 1.79 5.14 85.26 0.44 2.23 16 20 N -0.83 -42.26 10.97 21.82 0.24 -42.02 16 21 Si 0.99 37.14 29.59 68.60 2.03 39.17 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 25 C -0.15 -7.30 9.26 22.73 0.21 -7.08 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.66 7.79 -2.39 -0.02 1.64 16 28 H 0.10 1.77 6.35 -2.39 -0.02 1.75 16 29 H 0.11 2.96 6.57 -2.39 -0.02 2.95 16 30 H 0.07 1.52 8.10 -2.38 -0.02 1.50 16 31 H 0.09 1.91 6.88 -2.39 -0.02 1.89 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.76 7.98 -2.39 -0.02 0.74 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.05 0.89 7.34 -2.39 -0.02 0.87 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.10 1.56 6.59 -2.39 -0.02 1.55 16 39 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 40 H 0.13 4.90 7.59 -2.91 -0.02 4.88 16 41 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 42 H 0.11 5.94 6.18 -2.91 -0.02 5.92 16 43 H 0.29 13.46 8.30 -92.70 -0.77 12.69 16 44 H 0.11 5.28 7.60 -2.91 -0.02 5.26 16 Total: -1.00 -65.51 364.33 1.56 -63.95 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.99 Total: 30.24 kcal Atomic # 6 Polarization: -82.13 SS G_CDS: 4.49 Total: -77.64 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -1.50 Total: -72.14 kcal Atomic # 8 Polarization: -83.56 SS G_CDS: -4.13 Total: -87.68 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: 104.41 SS G_CDS: -0.32 Total: 104.09 kcal Total: -65.51 1.56 -63.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.221 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds