Wall clock time and date at job start Tue Mar 31 2020 14:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00164 * 2 1 4 4 H 1.08997 * 115.55216 * 97.35179 * 3 2 1 5 5 C 1.52999 * 117.49422 * 243.02176 * 3 2 1 6 6 C 1.53003 * 117.49450 * 311.67983 * 3 2 1 7 7 C 1.52992 * 117.50216 * 359.97438 * 6 3 2 8 8 C 1.52997 * 117.49424 * 145.00223 * 6 3 2 9 9 S 1.65600 * 119.99656 * 179.97438 * 2 1 3 10 10 O 1.42098 * 104.27569 * 26.08046 * 9 2 1 11 11 O 1.42102 * 104.27384 * 153.93373 * 9 2 1 12 12 C 1.81392 * 104.45284 * 270.00477 * 9 2 1 13 13 C 1.50702 * 109.47144 * 180.02562 * 12 9 2 14 14 C 1.38638 * 119.74779 * 269.72584 * 13 12 9 15 15 C 1.37623 * 120.24512 * 179.72572 * 14 13 12 16 16 C 1.40722 * 119.74170 * 0.52273 * 15 14 13 17 17 C 1.41397 * 120.23866 * 179.72708 * 16 15 14 18 18 H 1.07997 * 119.99767 * 214.37928 * 17 16 15 19 19 C 1.39948 * 119.99718 * 34.38961 * 17 16 15 20 20 N 1.30823 * 120.00587 * 356.32438 * 19 17 16 21 21 Si 1.86807 * 119.99529 * 176.32894 * 19 17 16 22 22 H 1.48494 * 109.47299 * 90.00030 * 21 19 17 23 23 H 1.48495 * 109.46813 * 209.99827 * 21 19 17 24 24 H 1.48499 * 109.47019 * 329.99670 * 21 19 17 25 25 C 1.40708 * 119.51272 * 359.75396 * 16 15 14 26 26 C 1.37615 * 119.74813 * 359.97438 * 25 16 15 27 27 H 1.09006 * 109.46771 * 95.30734 * 1 2 3 28 28 H 1.08996 * 109.47499 * 215.31358 * 1 2 3 29 29 H 1.09002 * 109.46897 * 335.31598 * 1 2 3 30 30 H 1.09001 * 117.49441 * 214.99999 * 5 3 2 31 31 H 1.09000 * 117.50261 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.46861 * 66.14126 * 7 6 3 33 33 H 1.08993 * 109.47227 * 186.14256 * 7 6 3 34 34 H 1.09002 * 109.47175 * 306.14492 * 7 6 3 35 35 H 1.08998 * 109.47751 * 59.99984 * 8 6 3 36 36 H 1.08999 * 109.47353 * 179.97438 * 8 6 3 37 37 H 1.09005 * 109.47213 * 299.99494 * 8 6 3 38 38 H 1.09006 * 109.47109 * 300.00029 * 12 9 2 39 39 H 1.09007 * 109.47509 * 60.00073 * 12 9 2 40 40 H 1.07997 * 119.87848 * 359.97438 * 14 13 12 41 41 H 1.07993 * 120.12676 * 180.28083 * 15 14 13 42 42 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.12514 * 179.97438 * 25 16 15 44 44 H 1.08001 * 119.87734 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 2.5416 1.6129 0.9753 5 6 3.0839 1.5725 -1.2095 6 6 1.7692 2.3317 -1.0137 7 6 0.6091 1.9881 -1.9500 8 6 1.8566 3.7965 -0.5807 9 16 2.2929 -1.4342 0.0006 10 8 1.3969 -2.3563 -0.6044 11 8 3.5395 -1.1194 -0.6046 12 6 2.5192 -1.8256 1.7573 13 6 3.2702 -3.1253 1.8897 14 6 2.5707 -4.3204 1.9560 15 6 3.2464 -5.5138 2.0713 16 6 4.6523 -5.5168 2.1330 17 6 5.3569 -6.7364 2.2573 18 1 6.2714 -6.7756 2.8305 19 6 4.8694 -7.8925 1.6373 20 7 3.7255 -7.8621 1.0034 21 14 5.8522 -9.4792 1.7152 22 1 5.4488 -10.2529 2.9167 23 1 5.5887 -10.2850 0.4961 24 1 7.3006 -9.1610 1.7947 25 6 5.3515 -4.2974 2.0707 26 6 4.6553 -3.1165 1.9498 27 1 -0.3633 -0.0951 -1.0233 28 1 -0.3634 -0.8385 0.5940 29 1 -0.3633 0.9338 0.4292 30 1 4.0112 2.1167 -1.0298 31 1 3.1224 0.8284 -2.0050 32 1 -0.3075 1.8831 -1.3695 33 1 0.4856 2.7852 -2.6831 34 1 0.8226 1.0512 -2.4645 35 1 2.8885 4.0396 -0.3272 36 1 1.5229 4.4372 -1.3969 37 1 1.2211 3.9565 0.2904 38 1 3.0865 -1.0280 2.2372 39 1 1.5449 -1.9180 2.2375 40 1 1.4916 -4.3152 1.9129 41 1 2.6997 -6.4439 2.1181 42 1 3.3878 -8.6633 0.5734 43 1 6.4304 -4.2882 2.1176 44 1 5.1898 -2.1793 1.9022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592048560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:46 Heat of formation + Delta-G solvation = -30.353989 kcal Electronic energy + Delta-G solvation = -25373.324921 eV Core-core repulsion = 21804.241200 eV Total energy + Delta-G solvation = -3569.083721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.12602 -37.78448 -36.61638 -35.39252 -34.09156 -34.06074 -31.45056 -29.65569 -29.44499 -27.84020 -27.63192 -25.66250 -24.18516 -22.35304 -21.13858 -20.29445 -19.32117 -18.36438 -17.39403 -17.08257 -16.34107 -15.90500 -15.36824 -15.12848 -14.77933 -14.35930 -14.06315 -13.90751 -13.81773 -13.52395 -13.25930 -12.78176 -12.69395 -12.57133 -12.16721 -12.12475 -12.07679 -11.92705 -11.82559 -11.64509 -11.52412 -11.35674 -11.27017 -11.22375 -11.14005 -11.05438 -10.55815 -10.38136 -10.18488 -9.82969 -9.78504 -9.51373 -9.26226 -8.86923 -7.60872 -7.30220 -6.73144 -4.50404 0.60905 2.65191 2.94875 2.95488 3.04751 3.07198 3.13737 3.47832 3.89647 4.27299 4.40743 4.49991 4.59250 4.62431 4.73340 4.88467 5.04556 5.27393 5.31151 5.37861 5.40821 5.50961 5.52570 5.63446 5.70609 5.72287 5.75085 5.76372 5.90671 5.98090 6.03271 6.08536 6.18989 6.20269 6.26904 6.67651 6.83864 6.98991 7.09987 7.24655 7.50460 7.65500 7.90069 7.96691 8.18172 8.53714 8.79376 8.83426 10.17182 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.002880 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.034642 B = 9720.086148 C = 9952.833397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.986 5.986 3 C 0.078 3.922 4 H 0.114 0.886 5 C -0.153 4.153 6 C -0.129 4.129 7 C -0.117 4.117 8 C -0.113 4.113 9 S 2.580 3.420 10 O -0.958 6.958 11 O -0.953 6.953 12 C -0.525 4.525 13 C -0.224 4.224 14 C -0.089 4.089 15 C -0.154 4.154 16 C 0.113 3.887 17 C -0.455 4.455 18 H 0.080 0.920 19 C 0.068 3.932 20 N -0.800 5.800 21 Si 0.919 3.081 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.214 4.214 26 C -0.077 4.077 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.282 0.718 43 H 0.100 0.900 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 17.346 -0.950 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.821 5.821 3 C -0.029 4.029 4 H 0.131 0.869 5 C -0.192 4.192 6 C -0.131 4.131 7 C -0.175 4.175 8 C -0.171 4.171 9 S 2.680 3.320 10 O -0.949 6.949 11 O -0.943 6.943 12 C -0.656 4.656 13 C -0.229 4.229 14 C -0.109 4.109 15 C -0.173 4.173 16 C 0.110 3.890 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.149 4.149 20 N -0.426 5.426 21 Si 0.744 3.256 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.186 1.186 25 C -0.234 4.234 26 C -0.097 4.097 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.113 0.887 41 H 0.151 0.849 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.313 16.787 -1.912 18.037 hybrid contribution 0.225 -0.563 0.633 0.876 sum -6.088 16.225 -1.279 17.377 Atomic orbital electron populations 1.21527 0.79050 1.02355 1.01976 1.57398 1.14320 1.20004 1.90375 1.21542 1.00339 0.86159 0.94880 0.86858 1.23618 0.93696 1.02061 0.99776 1.21870 0.97618 0.93015 1.00593 1.21499 0.96536 1.01474 0.97941 1.21345 1.01988 0.92513 1.01204 1.06638 0.73816 0.72255 0.79244 1.93540 1.64949 1.61789 1.74595 1.93521 1.43867 1.82544 1.74384 1.29019 1.08288 1.05378 1.22901 1.18214 0.93210 0.90345 1.21098 1.20704 0.97728 0.92628 0.99797 1.21619 0.94705 0.96673 1.04348 1.17798 0.92014 0.92209 0.87020 1.19650 1.08096 0.92564 1.28208 0.90201 1.25971 0.94820 1.00644 0.93432 1.69744 1.17104 1.30285 1.25496 0.86130 0.80688 0.80295 0.78533 1.19363 1.20110 1.18577 1.21117 0.98075 0.92631 1.11581 1.20481 0.92716 0.97187 0.99275 0.92467 0.91613 0.91076 0.87795 0.87635 0.91679 0.92325 0.92214 0.92182 0.91953 0.92206 0.86202 0.86267 0.88662 0.84899 0.90695 0.88201 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 8.07 59.85 0.48 1.52 16 2 N -0.99 -12.97 3.23 -114.61 -0.37 -13.34 16 3 C 0.08 0.89 5.67 -67.93 -0.39 0.51 16 4 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 5 C -0.15 -1.83 8.46 -26.69 -0.23 -2.06 16 6 C -0.13 -1.25 2.66 -154.47 -0.41 -1.66 16 7 C -0.12 -1.10 7.90 37.15 0.29 -0.80 16 8 C -0.11 -0.82 9.85 37.16 0.37 -0.45 16 9 S 2.58 45.69 5.37 -107.50 -0.58 45.12 16 10 O -0.96 -20.19 17.19 -57.54 -0.99 -21.18 16 11 O -0.95 -19.17 15.56 -57.54 -0.90 -20.07 16 12 C -0.53 -8.82 6.30 36.01 0.23 -8.59 16 13 C -0.22 -4.91 5.16 -104.33 -0.54 -5.45 16 14 C -0.09 -2.11 9.67 -39.66 -0.38 -2.49 16 15 C -0.15 -4.01 8.67 -38.87 -0.34 -4.35 16 16 C 0.11 3.00 5.55 -106.82 -0.59 2.40 16 17 C -0.45 -11.91 9.05 -37.74 -0.34 -12.25 16 18 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 19 C 0.07 1.70 5.42 -17.34 -0.09 1.61 16 20 N -0.80 -20.77 10.60 55.55 0.59 -20.18 16 21 Si 0.92 18.65 29.56 -169.99 -5.03 13.63 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.21 -5.25 9.80 -38.88 -0.38 -5.63 16 26 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 27 H 0.06 0.62 6.72 -51.93 -0.35 0.27 16 28 H 0.07 0.68 7.98 -51.93 -0.41 0.27 16 29 H 0.07 0.58 7.44 -51.93 -0.39 0.19 16 30 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 31 H 0.11 1.50 7.44 -51.93 -0.39 1.11 16 32 H 0.06 0.54 5.99 -51.93 -0.31 0.23 16 33 H 0.06 0.47 8.02 -51.93 -0.42 0.05 16 34 H 0.06 0.66 7.64 -51.93 -0.40 0.26 16 35 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 36 H 0.06 0.40 8.00 -51.93 -0.42 -0.01 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.12 1.69 8.08 -51.92 -0.42 1.27 16 39 H 0.12 1.71 8.08 -51.92 -0.42 1.29 16 40 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.13 3.56 6.14 -52.49 -0.32 3.24 16 42 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 43 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 44 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -31.75 368.82 -11.14 -42.89 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.73 Total: 7.39 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: -2.70 Total: -39.82 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.22 Total: -33.52 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.88 Total: -41.25 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: 45.69 SS G_CDS: -0.58 Total: 45.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.75 -11.14 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592048560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.540 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds