Wall clock time and date at job start Tue Mar 31 2020 14:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00164 * 2 1 4 4 H 1.08997 * 115.55216 * 97.35179 * 3 2 1 5 5 C 1.52999 * 117.49422 * 243.02176 * 3 2 1 6 6 C 1.53003 * 117.49450 * 311.67983 * 3 2 1 7 7 C 1.52992 * 117.50216 * 359.97438 * 6 3 2 8 8 C 1.52997 * 117.49424 * 145.00223 * 6 3 2 9 9 S 1.65600 * 119.99656 * 179.97438 * 2 1 3 10 10 O 1.42098 * 104.27569 * 26.08046 * 9 2 1 11 11 O 1.42102 * 104.27384 * 153.93373 * 9 2 1 12 12 C 1.81392 * 104.45284 * 270.00477 * 9 2 1 13 13 C 1.50702 * 109.47144 * 180.02562 * 12 9 2 14 14 C 1.38638 * 119.74779 * 269.72584 * 13 12 9 15 15 C 1.37623 * 120.24512 * 179.72572 * 14 13 12 16 16 C 1.40722 * 119.74170 * 0.52273 * 15 14 13 17 17 C 1.41397 * 120.23866 * 179.72708 * 16 15 14 18 18 H 1.07997 * 119.99767 * 214.37928 * 17 16 15 19 19 C 1.39948 * 119.99718 * 34.38961 * 17 16 15 20 20 N 1.30823 * 120.00587 * 356.32438 * 19 17 16 21 21 Si 1.86807 * 119.99529 * 176.32894 * 19 17 16 22 22 H 1.48494 * 109.47299 * 90.00030 * 21 19 17 23 23 H 1.48495 * 109.46813 * 209.99827 * 21 19 17 24 24 H 1.48499 * 109.47019 * 329.99670 * 21 19 17 25 25 C 1.40708 * 119.51272 * 359.75396 * 16 15 14 26 26 C 1.37615 * 119.74813 * 359.97438 * 25 16 15 27 27 H 1.09006 * 109.46771 * 95.30734 * 1 2 3 28 28 H 1.08996 * 109.47499 * 215.31358 * 1 2 3 29 29 H 1.09002 * 109.46897 * 335.31598 * 1 2 3 30 30 H 1.09001 * 117.49441 * 214.99999 * 5 3 2 31 31 H 1.09000 * 117.50261 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.46861 * 66.14126 * 7 6 3 33 33 H 1.08993 * 109.47227 * 186.14256 * 7 6 3 34 34 H 1.09002 * 109.47175 * 306.14492 * 7 6 3 35 35 H 1.08998 * 109.47751 * 59.99984 * 8 6 3 36 36 H 1.08999 * 109.47353 * 179.97438 * 8 6 3 37 37 H 1.09005 * 109.47213 * 299.99494 * 8 6 3 38 38 H 1.09006 * 109.47109 * 300.00029 * 12 9 2 39 39 H 1.09007 * 109.47509 * 60.00073 * 12 9 2 40 40 H 1.07997 * 119.87848 * 359.97438 * 14 13 12 41 41 H 1.07993 * 120.12676 * 180.28083 * 15 14 13 42 42 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.12514 * 179.97438 * 25 16 15 44 44 H 1.08001 * 119.87734 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 2.5416 1.6129 0.9753 5 6 3.0839 1.5725 -1.2095 6 6 1.7692 2.3317 -1.0137 7 6 0.6091 1.9881 -1.9500 8 6 1.8566 3.7965 -0.5807 9 16 2.2929 -1.4342 0.0006 10 8 1.3969 -2.3563 -0.6044 11 8 3.5395 -1.1194 -0.6046 12 6 2.5192 -1.8256 1.7573 13 6 3.2702 -3.1253 1.8897 14 6 2.5707 -4.3204 1.9560 15 6 3.2464 -5.5138 2.0713 16 6 4.6523 -5.5168 2.1330 17 6 5.3569 -6.7364 2.2573 18 1 6.2714 -6.7756 2.8305 19 6 4.8694 -7.8925 1.6373 20 7 3.7255 -7.8621 1.0034 21 14 5.8522 -9.4792 1.7152 22 1 5.4488 -10.2529 2.9167 23 1 5.5887 -10.2850 0.4961 24 1 7.3006 -9.1610 1.7947 25 6 5.3515 -4.2974 2.0707 26 6 4.6553 -3.1165 1.9498 27 1 -0.3633 -0.0951 -1.0233 28 1 -0.3634 -0.8385 0.5940 29 1 -0.3633 0.9338 0.4292 30 1 4.0112 2.1167 -1.0298 31 1 3.1224 0.8284 -2.0050 32 1 -0.3075 1.8831 -1.3695 33 1 0.4856 2.7852 -2.6831 34 1 0.8226 1.0512 -2.4645 35 1 2.8885 4.0396 -0.3272 36 1 1.5229 4.4372 -1.3969 37 1 1.2211 3.9565 0.2904 38 1 3.0865 -1.0280 2.2372 39 1 1.5449 -1.9180 2.2375 40 1 1.4916 -4.3152 1.9129 41 1 2.6997 -6.4439 2.1181 42 1 3.3878 -8.6633 0.5734 43 1 6.4304 -4.2882 2.1176 44 1 5.1898 -2.1793 1.9022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592048560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:45 Heat of formation + Delta-G solvation = -49.398510 kcal Electronic energy + Delta-G solvation = -25374.150753 eV Core-core repulsion = 21804.241200 eV Total energy + Delta-G solvation = -3569.909554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.98334 -39.61826 -38.12557 -36.90526 -35.90031 -35.03748 -33.20144 -31.32067 -30.42935 -29.52900 -28.30277 -26.60829 -25.93973 -23.34476 -23.02064 -22.08985 -20.21441 -19.57749 -19.29474 -18.30472 -17.64286 -17.31321 -17.00026 -16.30492 -15.95283 -15.83995 -15.70997 -15.45464 -14.81239 -14.43366 -14.33967 -14.02454 -13.93862 -13.77684 -13.62530 -13.49537 -13.45795 -13.14523 -13.06913 -12.97487 -12.93631 -12.87773 -12.76995 -12.62591 -12.39306 -12.20003 -11.97375 -11.87799 -11.61903 -11.38325 -11.19373 -11.04864 -10.65258 -9.87349 -9.49784 -9.15543 -8.58525 -6.46973 -0.78553 0.85064 1.03230 1.37362 1.47106 1.53328 1.74933 2.19694 2.62270 2.69176 2.94278 3.17243 3.55502 3.59321 3.77231 3.82147 3.89518 4.04366 4.19584 4.23483 4.40038 4.49184 4.55876 4.65492 4.75714 4.82248 4.87061 4.90752 4.97187 5.02372 5.07430 5.09233 5.09748 5.10343 5.16515 5.23318 5.32200 5.35583 5.48965 5.61306 5.72453 5.79116 5.99291 6.05988 6.27949 6.61257 6.87080 6.91863 8.34405 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.002880 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.034642 B = 9720.086148 C = 9952.833397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.976 5.976 3 C 0.064 3.936 4 H 0.141 0.859 5 C -0.179 4.179 6 C -0.106 4.106 7 C -0.123 4.123 8 C -0.111 4.111 9 S 2.593 3.407 10 O -1.000 7.000 11 O -0.983 6.983 12 C -0.526 4.526 13 C -0.218 4.218 14 C -0.101 4.101 15 C -0.180 4.180 16 C 0.078 3.922 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.024 3.976 20 N -0.838 5.838 21 Si 0.993 3.007 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.257 1.257 25 C -0.231 4.231 26 C -0.085 4.085 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.287 0.713 43 H 0.109 0.891 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 20.225 -0.174 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.813 5.813 3 C -0.043 4.043 4 H 0.158 0.842 5 C -0.217 4.217 6 C -0.108 4.108 7 C -0.180 4.180 8 C -0.168 4.168 9 S 2.694 3.306 10 O -0.990 6.990 11 O -0.973 6.973 12 C -0.657 4.657 13 C -0.222 4.222 14 C -0.120 4.120 15 C -0.200 4.200 16 C 0.076 3.924 17 C -0.523 4.523 18 H 0.100 0.900 19 C -0.189 4.189 20 N -0.465 5.465 21 Si 0.813 3.187 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.181 1.181 25 C -0.250 4.250 26 C -0.104 4.104 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.027 19.653 -1.124 20.901 hybrid contribution 0.323 -1.169 0.341 1.260 sum -6.703 18.484 -0.783 19.677 Atomic orbital electron populations 1.21828 0.77283 1.04492 1.02361 1.56919 1.15231 1.19081 1.90084 1.21983 1.00534 0.85630 0.96108 0.84174 1.23632 0.95685 1.02787 0.99639 1.22006 0.95885 0.94017 0.98906 1.21572 0.97114 1.00832 0.98459 1.21383 1.02889 0.90339 1.02164 1.05723 0.73070 0.72727 0.79089 1.93494 1.65835 1.63978 1.75691 1.93488 1.45480 1.83163 1.75189 1.29065 1.09922 1.03646 1.23043 1.18645 0.93461 0.92018 1.18084 1.21009 0.98865 0.92694 0.99445 1.21607 0.94952 0.97113 1.06348 1.18154 0.92579 0.93406 0.88291 1.19903 1.08821 0.93626 1.29926 0.90038 1.26897 0.95703 1.03824 0.92453 1.69834 1.18707 1.31436 1.26569 0.85031 0.79025 0.75719 0.78877 1.18279 1.19512 1.18119 1.21366 0.98821 0.92926 1.11892 1.20890 0.93395 0.97783 0.98360 0.92840 0.91167 0.87534 0.86572 0.90821 0.90101 0.90775 0.94707 0.91572 0.90929 0.90688 0.82556 0.83203 0.86842 0.86684 0.90231 0.87296 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 8.07 127.77 1.03 2.61 16 2 N -0.98 -23.22 3.23 -516.50 -1.67 -24.89 16 3 C 0.06 1.26 5.67 44.99 0.26 1.52 16 4 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 5 C -0.18 -4.02 8.46 30.62 0.26 -3.76 16 6 C -0.11 -1.74 2.66 -52.16 -0.14 -1.87 16 7 C -0.12 -2.00 7.90 71.98 0.57 -1.43 16 8 C -0.11 -1.14 9.85 71.98 0.71 -0.43 16 9 S 2.59 88.45 5.37 -56.49 -0.30 88.14 16 10 O -1.00 -42.02 17.19 -127.65 -2.19 -44.22 16 11 O -0.98 -39.10 15.56 -127.65 -1.99 -41.09 16 12 C -0.53 -16.09 6.30 71.24 0.45 -15.64 16 13 C -0.22 -9.33 5.16 -19.67 -0.10 -9.43 16 14 C -0.10 -4.82 9.67 22.22 0.21 -4.60 16 15 C -0.18 -9.84 8.67 22.73 0.20 -9.64 16 16 C 0.08 4.35 5.55 -21.29 -0.12 4.23 16 17 C -0.49 -26.95 9.05 23.46 0.21 -26.74 16 18 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 19 C 0.02 1.24 5.42 85.26 0.46 1.70 16 20 N -0.84 -45.51 10.60 21.83 0.23 -45.28 16 21 Si 0.99 39.14 29.56 68.60 2.03 41.17 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 25 C -0.23 -11.53 9.80 22.73 0.22 -11.31 16 26 C -0.09 -3.78 9.67 22.22 0.21 -3.56 16 27 H 0.05 1.05 6.72 -2.38 -0.02 1.03 16 28 H 0.07 1.26 7.98 -2.39 -0.02 1.25 16 29 H 0.11 1.25 7.44 -2.39 -0.02 1.23 16 30 H 0.12 2.22 8.05 -2.39 -0.02 2.20 16 31 H 0.07 2.13 7.44 -2.39 -0.02 2.12 16 32 H 0.08 1.06 5.99 -2.39 -0.01 1.04 16 33 H 0.07 0.97 8.02 -2.39 -0.02 0.95 16 34 H 0.03 0.74 7.64 -2.39 -0.02 0.72 16 35 H 0.07 0.63 7.90 -2.39 -0.02 0.61 16 36 H 0.07 0.64 8.00 -2.39 -0.02 0.62 16 37 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.16 3.69 8.08 -2.39 -0.02 3.67 16 39 H 0.15 3.71 8.08 -2.39 -0.02 3.69 16 40 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 41 H 0.12 6.56 6.14 -2.91 -0.02 6.54 16 42 H 0.29 14.15 8.30 -92.71 -0.77 13.39 16 43 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 44 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -73.25 368.82 1.53 -71.72 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.98 Total: 32.79 kcal Atomic # 6 Polarization: -82.79 SS G_CDS: 4.44 Total: -78.36 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -1.44 Total: -70.16 kcal Atomic # 8 Polarization: -81.13 SS G_CDS: -4.18 Total: -85.31 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Atomic # 16 Polarization: 88.45 SS G_CDS: -0.30 Total: 88.14 kcal Total: -73.25 1.53 -71.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592048560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.322 kcal (2) G-P(sol) polarization free energy of solvation -73.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds