Wall clock time and date at job start Tue Mar 31 2020 13:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38254 * 120.00253 * 2 1 4 4 C 1.38219 * 120.00098 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99813 * 359.97438 * 4 3 2 6 6 C 1.38207 * 120.00009 * 359.95497 * 5 4 3 7 7 C 1.38221 * 120.00167 * 179.72748 * 2 1 3 8 8 C 1.50704 * 119.99315 * 359.97438 * 7 2 1 9 9 N 1.46504 * 115.54840 * 284.05945 * 8 7 2 10 10 S 1.65598 * 120.00141 * 305.65454 * 9 8 7 11 11 O 1.42102 * 104.27853 * 181.37702 * 10 9 8 12 12 O 1.42109 * 104.27485 * 309.23127 * 10 9 8 13 13 C 1.81397 * 104.45211 * 65.29927 * 10 9 8 14 14 C 1.53000 * 109.47128 * 179.29666 * 13 10 9 15 15 C 1.52999 * 109.46933 * 183.66651 * 14 13 10 16 16 C 1.50706 * 109.47076 * 183.65152 * 15 14 13 17 17 H 1.07998 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00035 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99983 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47165 * 89.99975 * 20 18 16 22 22 H 1.48494 * 109.47267 * 209.99946 * 20 18 16 23 23 H 1.48501 * 109.47000 * 329.99951 * 20 18 16 24 24 C 1.53001 * 117.49736 * 138.39814 * 8 7 2 25 25 C 1.52995 * 117.50099 * 69.73516 * 8 7 2 26 26 H 1.08994 * 109.47519 * 95.78108 * 1 2 3 27 27 H 1.09006 * 109.47238 * 335.78561 * 1 2 3 28 28 H 1.08999 * 109.47068 * 215.79174 * 1 2 3 29 29 H 1.07995 * 120.00113 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.00225 * 179.97438 * 4 3 2 31 31 H 1.07999 * 119.99722 * 179.97438 * 5 4 3 32 32 H 1.08002 * 120.00064 * 180.02562 * 6 5 4 33 33 H 0.96998 * 119.99718 * 125.65249 * 9 8 7 34 34 H 1.09001 * 109.47375 * 299.30204 * 13 10 9 35 35 H 1.09003 * 109.46795 * 59.30215 * 13 10 9 36 36 H 1.08996 * 109.47534 * 303.66715 * 14 13 10 37 37 H 1.08995 * 109.47329 * 63.67182 * 14 13 10 38 38 H 1.09000 * 109.47753 * 303.65528 * 15 14 13 39 39 H 1.09004 * 109.47302 * 63.65681 * 15 14 13 40 40 H 0.97006 * 119.99930 * 180.02562 * 19 18 16 41 41 H 1.08996 * 117.50052 * 359.97438 * 24 8 7 42 42 H 1.08991 * 117.49958 * 145.01649 * 24 8 7 43 43 H 1.08998 * 117.49677 * 214.97451 * 25 8 7 44 44 H 1.08996 * 117.49822 * 359.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0002 -0.0005 6 6 3.5806 -1.1970 0.0009 7 6 2.1981 -1.1970 0.0057 8 6 1.4444 -2.5020 0.0125 9 7 0.8509 -2.8822 1.2968 10 16 1.7958 -2.9623 2.6543 11 8 0.9047 -3.3852 3.6773 12 8 2.9001 -3.7679 2.2656 13 6 2.3255 -1.2509 2.9388 14 6 3.2016 -1.1897 4.1917 15 6 3.5731 0.2655 4.4837 16 6 4.5085 0.3180 5.6641 17 1 4.8084 -0.5952 6.1565 18 6 4.9823 1.5319 6.1148 19 7 5.7990 1.5777 7.1445 20 14 4.4641 3.1114 5.2627 21 1 3.2307 3.6368 5.9015 22 1 5.5500 4.1172 5.3816 23 1 4.1995 2.8359 3.8277 24 6 1.9697 -3.6258 -0.8832 25 6 0.6836 -2.8851 -1.2584 26 1 -0.3634 -0.1035 -1.0224 27 1 -0.3634 0.9373 0.4215 28 1 -0.3633 -0.8336 0.6010 29 1 1.6583 2.1326 -0.0004 30 1 4.1205 2.1325 -0.0010 31 1 5.3516 -0.0002 -0.0014 32 1 4.1205 -2.1324 0.0014 33 1 -0.0956 -3.0870 1.3520 34 1 2.8959 -0.8993 2.0791 35 1 1.4492 -0.6176 3.0771 36 1 2.6534 -1.6018 5.0389 37 1 4.1094 -1.7707 4.0290 38 1 4.0640 0.6973 3.6115 39 1 2.6701 0.8325 4.7102 40 1 6.1320 2.4317 7.4618 41 1 2.8600 -3.4210 -1.4777 42 1 1.8732 -4.6478 -0.5172 43 1 -0.2584 -3.4204 -1.1390 44 1 0.7278 -2.1930 -2.0993 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592067904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:23 Heat of formation + Delta-G solvation = -29.930671 kcal Electronic energy + Delta-G solvation = -26495.294248 eV Core-core repulsion = 22926.228883 eV Total energy + Delta-G solvation = -3569.065365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35345 -37.59652 -36.83129 -35.74208 -34.73363 -32.90520 -32.26470 -32.19683 -30.86009 -28.27156 -27.10916 -23.74086 -23.53367 -22.84445 -21.52544 -20.72183 -20.26034 -19.14109 -17.46875 -17.20424 -16.86279 -16.21463 -15.88562 -15.43938 -15.32033 -15.03639 -14.57675 -14.31643 -14.15792 -13.86706 -13.35613 -13.14213 -12.88841 -12.50000 -12.38021 -12.25127 -12.18454 -11.97684 -11.81931 -11.77501 -11.71935 -11.66482 -11.48820 -11.35406 -11.16007 -10.93839 -10.85745 -10.50334 -10.04147 -9.84578 -9.68638 -9.32479 -9.20473 -8.88745 -8.73830 -8.56776 -6.06583 -4.05154 0.45542 1.11711 1.28206 2.76311 3.26948 3.34157 3.36746 3.37010 3.65288 3.94461 4.18036 4.33402 4.41855 4.59197 4.67616 4.73921 4.81057 4.93384 5.04989 5.16960 5.20187 5.22247 5.28619 5.35163 5.42798 5.48152 5.54723 5.64749 5.71338 5.77262 5.86302 5.87043 5.97276 6.03811 6.20044 6.34676 6.38307 6.46358 6.47368 6.72463 6.82666 6.88234 7.18169 7.32170 7.73895 8.50344 8.98291 9.55015 11.06840 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.005051 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.023215 B = 5542.568879 C = 6671.853712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.120 4.120 6 C -0.102 4.102 7 C -0.092 4.092 8 C 0.144 3.856 9 N -1.087 6.087 10 S 2.599 3.401 11 O -0.965 6.965 12 O -0.954 6.954 13 C -0.621 4.621 14 C -0.094 4.094 15 C 0.000 4.000 16 C -0.524 4.524 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.901 5.901 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.165 4.165 25 C -0.157 4.157 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.415 0.585 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.020 0.980 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -4.468 -21.505 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.118 4.118 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.094 4.094 8 C 0.054 3.946 9 N -0.842 5.842 10 S 2.696 3.304 11 O -0.955 6.955 12 O -0.944 6.944 13 C -0.753 4.753 14 C -0.133 4.133 15 C -0.039 4.039 16 C -0.562 4.562 17 H 0.092 0.908 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.204 4.204 25 C -0.196 4.196 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.250 0.750 34 H 0.156 0.844 35 H 0.144 0.856 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.829 -5.146 -20.897 24.092 hybrid contribution -0.609 1.640 -0.384 1.791 sum -11.438 -3.506 -21.280 24.412 Atomic orbital electron populations 1.20872 0.91095 1.03113 1.02492 1.19712 0.96152 0.92102 0.98104 1.21073 0.94359 0.97432 1.01151 1.21288 0.94376 0.98485 0.97655 1.21209 1.00534 0.92098 0.99983 1.21220 0.93218 0.99218 0.98345 1.18993 0.93146 0.91999 1.05270 1.18566 1.01525 0.92332 0.82214 1.55307 1.22505 1.85470 1.20912 1.05328 0.74269 0.78277 0.72568 1.93584 1.64436 1.81156 1.56331 1.93561 1.54084 1.65247 1.81466 1.30867 1.11430 1.22808 1.10162 1.21273 0.97418 1.02887 0.91735 1.19483 0.96543 0.90508 0.97379 1.21150 1.27091 0.94881 1.13108 0.90786 1.25003 0.94602 0.99011 0.94690 1.69912 1.32959 1.25877 1.25265 0.86810 0.78378 0.83476 0.80874 1.20290 1.21341 1.18870 1.23498 0.97789 0.97543 1.01604 1.23288 0.96778 1.03111 0.96382 0.90988 0.91496 0.90928 0.85791 0.85715 0.85312 0.84806 0.75041 0.84423 0.85615 0.91449 0.91042 0.96149 0.96810 0.92689 0.87674 0.87636 0.87970 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.09 36.00 0.33 -0.67 16 2 C -0.06 -0.64 5.52 -104.63 -0.58 -1.22 16 3 C -0.12 -1.36 9.68 -39.58 -0.38 -1.74 16 4 C -0.10 -1.18 10.05 -39.58 -0.40 -1.57 16 5 C -0.12 -1.44 9.81 -39.58 -0.39 -1.83 16 6 C -0.10 -1.22 7.56 -39.59 -0.30 -1.52 16 7 C -0.09 -1.04 2.92 -104.62 -0.31 -1.34 16 8 C 0.14 1.47 1.08 -132.97 -0.14 1.32 16 9 N -1.09 -12.14 5.10 -0.40 0.00 -12.15 16 10 S 2.60 40.42 5.37 -107.50 -0.58 39.85 16 11 O -0.96 -17.64 18.08 -57.54 -1.04 -18.68 16 12 O -0.95 -17.01 17.81 -57.54 -1.02 -18.03 16 13 C -0.62 -10.09 5.22 37.16 0.19 -9.89 16 14 C -0.09 -1.92 5.16 -26.73 -0.14 -2.05 16 15 C 0.00 -0.01 4.04 -27.88 -0.11 -0.12 16 16 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 17 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 20 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 24 C -0.17 -1.53 9.69 -26.69 -0.26 -1.79 16 25 C -0.16 -1.17 9.64 -26.69 -0.26 -1.42 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.52 8.05 -51.93 -0.42 0.11 16 28 H 0.07 0.59 6.62 -51.93 -0.34 0.24 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.54 7.66 -52.49 -0.40 1.14 16 33 H 0.41 3.61 8.91 -34.47 -0.31 3.31 16 34 H 0.14 2.14 3.89 -51.92 -0.20 1.93 16 35 H 0.13 1.83 8.14 -51.92 -0.42 1.40 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 39 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.10 0.89 7.75 -51.93 -0.40 0.48 16 42 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -35.47 368.23 -10.82 -46.28 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.66 Total: 4.83 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: -3.17 Total: -37.37 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.77 Total: -39.25 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -2.06 Total: -36.72 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 40.42 SS G_CDS: -0.58 Total: 39.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.47 -10.82 -46.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592067904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.353 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds