Wall clock time and date at job start Tue Mar 31 2020 13:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38254 * 120.00253 * 2 1 4 4 C 1.38219 * 120.00098 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99813 * 359.97438 * 4 3 2 6 6 C 1.38207 * 120.00009 * 359.95497 * 5 4 3 7 7 C 1.38221 * 120.00167 * 179.72748 * 2 1 3 8 8 C 1.50704 * 119.99315 * 359.97438 * 7 2 1 9 9 N 1.46504 * 115.54840 * 284.05945 * 8 7 2 10 10 S 1.65598 * 120.00141 * 305.65454 * 9 8 7 11 11 O 1.42102 * 104.27853 * 181.37702 * 10 9 8 12 12 O 1.42109 * 104.27485 * 309.23127 * 10 9 8 13 13 C 1.81397 * 104.45211 * 65.29927 * 10 9 8 14 14 C 1.53000 * 109.47128 * 179.29666 * 13 10 9 15 15 C 1.52999 * 109.46933 * 183.66651 * 14 13 10 16 16 C 1.50706 * 109.47076 * 183.65152 * 15 14 13 17 17 H 1.07998 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00035 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99983 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47165 * 89.99975 * 20 18 16 22 22 H 1.48494 * 109.47267 * 209.99946 * 20 18 16 23 23 H 1.48501 * 109.47000 * 329.99951 * 20 18 16 24 24 C 1.53001 * 117.49736 * 138.39814 * 8 7 2 25 25 C 1.52995 * 117.50099 * 69.73516 * 8 7 2 26 26 H 1.08994 * 109.47519 * 95.78108 * 1 2 3 27 27 H 1.09006 * 109.47238 * 335.78561 * 1 2 3 28 28 H 1.08999 * 109.47068 * 215.79174 * 1 2 3 29 29 H 1.07995 * 120.00113 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.00225 * 179.97438 * 4 3 2 31 31 H 1.07999 * 119.99722 * 179.97438 * 5 4 3 32 32 H 1.08002 * 120.00064 * 180.02562 * 6 5 4 33 33 H 0.96998 * 119.99718 * 125.65249 * 9 8 7 34 34 H 1.09001 * 109.47375 * 299.30204 * 13 10 9 35 35 H 1.09003 * 109.46795 * 59.30215 * 13 10 9 36 36 H 1.08996 * 109.47534 * 303.66715 * 14 13 10 37 37 H 1.08995 * 109.47329 * 63.67182 * 14 13 10 38 38 H 1.09000 * 109.47753 * 303.65528 * 15 14 13 39 39 H 1.09004 * 109.47302 * 63.65681 * 15 14 13 40 40 H 0.97006 * 119.99930 * 180.02562 * 19 18 16 41 41 H 1.08996 * 117.50052 * 359.97438 * 24 8 7 42 42 H 1.08991 * 117.49958 * 145.01649 * 24 8 7 43 43 H 1.08998 * 117.49677 * 214.97451 * 25 8 7 44 44 H 1.08996 * 117.49822 * 359.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0002 -0.0005 6 6 3.5806 -1.1970 0.0009 7 6 2.1981 -1.1970 0.0057 8 6 1.4444 -2.5020 0.0125 9 7 0.8509 -2.8822 1.2968 10 16 1.7958 -2.9623 2.6543 11 8 0.9047 -3.3852 3.6773 12 8 2.9001 -3.7679 2.2656 13 6 2.3255 -1.2509 2.9388 14 6 3.2016 -1.1897 4.1917 15 6 3.5731 0.2655 4.4837 16 6 4.5085 0.3180 5.6641 17 1 4.8084 -0.5952 6.1565 18 6 4.9823 1.5319 6.1148 19 7 5.7990 1.5777 7.1445 20 14 4.4641 3.1114 5.2627 21 1 3.2307 3.6368 5.9015 22 1 5.5500 4.1172 5.3816 23 1 4.1995 2.8359 3.8277 24 6 1.9697 -3.6258 -0.8832 25 6 0.6836 -2.8851 -1.2584 26 1 -0.3634 -0.1035 -1.0224 27 1 -0.3634 0.9373 0.4215 28 1 -0.3633 -0.8336 0.6010 29 1 1.6583 2.1326 -0.0004 30 1 4.1205 2.1325 -0.0010 31 1 5.3516 -0.0002 -0.0014 32 1 4.1205 -2.1324 0.0014 33 1 -0.0956 -3.0870 1.3520 34 1 2.8959 -0.8993 2.0791 35 1 1.4492 -0.6176 3.0771 36 1 2.6534 -1.6018 5.0389 37 1 4.1094 -1.7707 4.0290 38 1 4.0640 0.6973 3.6115 39 1 2.6701 0.8325 4.7102 40 1 6.1320 2.4317 7.4618 41 1 2.8600 -3.4210 -1.4777 42 1 1.8732 -4.6478 -0.5172 43 1 -0.2584 -3.4204 -1.1390 44 1 0.7278 -2.1930 -2.0993 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592067904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:22 Heat of formation + Delta-G solvation = -53.935849 kcal Electronic energy + Delta-G solvation = -26496.335191 eV Core-core repulsion = 22926.228883 eV Total energy + Delta-G solvation = -3570.106308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14335 -38.43239 -38.12197 -37.09463 -36.51292 -34.27034 -33.65057 -33.16197 -31.71213 -30.10373 -27.81411 -25.38896 -24.55115 -23.49632 -22.37322 -22.24011 -21.38199 -20.27346 -18.98534 -18.63877 -18.09924 -17.37654 -17.04297 -16.54451 -16.22519 -16.14985 -15.88333 -15.83364 -15.23400 -14.92085 -14.65586 -14.15423 -14.04222 -13.92130 -13.75164 -13.35333 -13.29339 -13.23631 -13.16035 -12.98415 -12.96962 -12.70822 -12.51066 -12.43004 -12.33010 -12.11551 -11.96530 -11.85198 -11.67567 -11.42591 -11.35790 -11.10268 -10.78616 -10.25711 -9.73967 -9.53986 -8.30756 -6.36444 -0.79718 0.27642 0.45083 1.34509 1.36855 1.49200 1.68360 2.35206 2.57319 2.74484 2.88528 3.04267 3.15961 3.38551 3.66310 3.81474 3.90798 3.97468 4.02554 4.09564 4.18929 4.25611 4.30091 4.47710 4.55986 4.65315 4.79175 4.80687 4.82806 4.91212 4.92772 4.94042 5.04977 5.06220 5.15808 5.27970 5.29872 5.36903 5.43304 5.55785 5.60670 5.62386 5.68269 6.04289 6.09576 6.24377 6.70846 7.28120 8.86234 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.005051 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.023215 B = 5542.568879 C = 6671.853712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.114 4.114 5 C -0.138 4.138 6 C -0.117 4.117 7 C -0.097 4.097 8 C 0.121 3.879 9 N -1.069 6.069 10 S 2.619 3.381 11 O -0.994 6.994 12 O -0.981 6.981 13 C -0.619 4.619 14 C -0.097 4.097 15 C 0.003 3.997 16 C -0.542 4.542 17 H 0.030 0.970 18 C 0.005 3.995 19 N -0.951 5.951 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.238 1.238 24 C -0.179 4.179 25 C -0.124 4.124 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.429 0.571 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.267 0.733 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.946 -3.141 -24.272 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.132 4.132 5 C -0.156 4.156 6 C -0.135 4.135 7 C -0.099 4.099 8 C 0.032 3.968 9 N -0.828 5.828 10 S 2.715 3.285 11 O -0.984 6.984 12 O -0.970 6.970 13 C -0.750 4.750 14 C -0.137 4.137 15 C -0.035 4.035 16 C -0.580 4.580 17 H 0.048 0.952 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.772 3.228 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.161 1.161 24 C -0.218 4.218 25 C -0.163 4.163 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.267 0.733 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.141 0.859 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.511 -3.839 -23.665 27.519 hybrid contribution 0.261 1.138 0.472 1.260 sum -13.250 -2.700 -23.192 26.846 Atomic orbital electron populations 1.20974 0.89233 1.03703 1.03934 1.20009 0.97526 0.91595 0.96982 1.21374 0.94209 0.98496 1.00744 1.21519 0.95112 0.98674 0.97909 1.21378 1.01002 0.92521 1.00735 1.21319 0.94030 0.99073 0.99129 1.19104 0.92797 0.92794 1.05197 1.18747 1.03409 0.92357 0.82314 1.54801 1.22868 1.85161 1.19976 1.04477 0.73781 0.77472 0.72810 1.93542 1.65024 1.81535 1.58295 1.93529 1.55592 1.65900 1.82019 1.30830 1.11616 1.24371 1.08161 1.21132 0.97995 1.00678 0.93848 1.19406 0.95769 0.92925 0.95415 1.21514 1.28225 0.93574 1.14670 0.95193 1.26047 0.94394 1.03373 0.95367 1.70078 1.34605 1.27188 1.27279 0.85661 0.78276 0.77885 0.80942 1.19062 1.20927 1.16056 1.23574 0.99418 0.97019 1.01755 1.23439 0.96552 1.01842 0.94444 0.88985 0.90768 0.90582 0.83991 0.84813 0.85037 0.85347 0.73263 0.83466 0.83390 0.92065 0.92092 0.95271 0.95558 0.92414 0.87380 0.88265 0.85907 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.09 71.23 0.65 -0.89 16 2 C -0.06 -1.10 5.52 -19.87 -0.11 -1.21 16 3 C -0.13 -2.52 9.68 22.27 0.22 -2.31 16 4 C -0.11 -2.47 10.05 22.27 0.22 -2.25 16 5 C -0.14 -3.21 9.81 22.27 0.22 -3.00 16 6 C -0.12 -2.71 7.56 22.27 0.17 -2.54 16 7 C -0.10 -1.97 2.92 -19.86 -0.06 -2.03 16 8 C 0.12 2.16 1.08 2.86 0.00 2.16 16 9 N -1.07 -21.32 5.10 -155.18 -0.79 -22.11 16 10 S 2.62 79.03 5.37 -56.49 -0.30 78.72 16 11 O -0.99 -35.61 18.08 -127.65 -2.31 -37.92 16 12 O -0.98 -34.95 17.81 -127.65 -2.27 -37.22 16 13 C -0.62 -19.27 5.22 71.98 0.38 -18.90 16 14 C -0.10 -4.00 5.16 30.59 0.16 -3.84 16 15 C 0.00 0.16 4.04 29.85 0.12 0.28 16 16 C -0.54 -31.97 9.66 25.60 0.25 -31.72 16 17 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 18 C 0.01 0.30 5.47 84.66 0.46 0.76 16 19 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 20 Si 0.95 43.58 27.47 68.60 1.88 45.47 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 24 C -0.18 -2.94 9.69 30.62 0.30 -2.65 16 25 C -0.12 -1.36 9.64 30.62 0.30 -1.07 16 26 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.85 8.05 -2.38 -0.02 0.83 16 28 H 0.08 0.91 6.62 -2.39 -0.02 0.89 16 29 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.13 2.99 7.66 -2.91 -0.02 2.97 16 33 H 0.43 6.16 8.91 -96.75 -0.86 5.29 16 34 H 0.15 4.35 3.89 -2.39 -0.01 4.35 16 35 H 0.15 3.90 8.14 -2.39 -0.02 3.88 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 39 H 0.03 1.17 7.57 -2.39 -0.02 1.15 16 40 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 41 H 0.11 1.68 7.75 -2.39 -0.02 1.66 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -78.31 368.23 -0.14 -78.46 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.08 Total: 23.91 kcal Atomic # 6 Polarization: -72.46 SS G_CDS: 3.27 Total: -69.19 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -0.49 Total: -82.23 kcal Atomic # 8 Polarization: -70.56 SS G_CDS: -4.58 Total: -75.14 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.47 kcal Atomic # 16 Polarization: 79.03 SS G_CDS: -0.30 Total: 78.72 kcal Total: -78.31 -0.14 -78.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592067904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.523 kcal (2) G-P(sol) polarization free energy of solvation -78.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds