Wall clock time and date at job start Tue Mar 31 2020 13:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48499 * 109.47231 * 267.32340 * 3 2 1 5 5 H 1.48503 * 109.47034 * 27.32553 * 3 2 1 6 6 H 1.48501 * 109.47200 * 147.32125 * 3 2 1 7 7 C 1.37874 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00566 * 353.51385 * 7 2 1 9 9 C 1.50699 * 119.99842 * 173.51963 * 7 2 1 10 10 O 1.42908 * 110.91597 * 328.72497 * 9 7 2 11 11 C 1.55157 * 111.00857 * 204.82261 * 9 7 2 12 12 C 1.54320 * 102.94654 * 206.42363 * 11 9 7 13 13 N 1.47026 * 107.27057 * 22.18947 * 12 11 9 14 14 C 1.34777 * 125.64765 * 181.02292 * 13 12 11 15 15 O 1.21283 * 119.99872 * 180.30141 * 14 13 12 16 16 C 1.50698 * 120.00202 * 0.02611 * 14 13 12 17 17 C 1.52994 * 109.47158 * 180.02562 * 16 14 13 18 18 O 1.42905 * 109.47295 * 180.02562 * 17 16 14 19 19 C 1.35940 * 117.00181 * 179.97438 * 18 17 16 20 20 C 1.38714 * 120.03081 * 359.72169 * 19 18 17 21 21 C 1.38149 * 119.96890 * 179.78894 * 20 19 18 22 22 C 1.38458 * 120.02831 * 0.48985 * 21 20 19 23 23 F 1.35101 * 119.96960 * 179.72272 * 22 21 20 24 24 C 1.38449 * 120.06171 * 359.73790 * 22 21 20 25 25 C 1.38150 * 120.03280 * 0.02957 * 24 22 21 26 26 C 1.47423 * 108.70378 * 1.29120 * 13 12 11 27 27 H 0.97002 * 119.99875 * 359.97438 * 1 2 3 28 28 H 0.96700 * 113.99822 * 292.30317 * 10 9 7 29 29 H 1.09004 * 110.71690 * 88.05489 * 11 9 7 30 30 H 1.08997 * 110.71667 * 324.78933 * 11 9 7 31 31 H 1.09001 * 109.88436 * 262.77502 * 12 11 9 32 32 H 1.08993 * 110.01242 * 141.67917 * 12 11 9 33 33 H 1.08998 * 109.47064 * 300.00446 * 16 14 13 34 34 H 1.09002 * 109.47188 * 59.99693 * 16 14 13 35 35 H 1.09008 * 109.47384 * 299.99942 * 17 16 14 36 36 H 1.08998 * 109.47695 * 60.00147 * 17 16 14 37 37 H 1.08001 * 120.01281 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.98466 * 180.25036 * 21 20 19 39 39 H 1.08006 * 119.98473 * 180.02562 * 24 22 21 40 40 H 1.07992 * 120.01847 * 179.97438 * 25 24 22 41 41 H 1.08998 * 110.37118 * 94.47569 * 26 13 12 42 42 H 1.09001 * 110.37097 * 216.80337 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5533 2.0137 -1.3985 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4571 0.7559 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1265 0.1047 9 6 3.5042 -1.1982 -0.1478 10 8 3.9411 -0.0993 -0.9502 11 6 4.0020 -2.5463 -0.7328 12 6 5.4430 -2.6478 -0.1899 13 7 5.5219 -1.7901 1.0017 14 6 6.6218 -1.5908 1.7546 15 8 6.5699 -0.8628 2.7232 16 6 7.9146 -2.2774 1.3965 17 6 8.9968 -1.8845 2.4040 18 8 10.2230 -2.5351 2.0641 19 6 11.2939 -2.2908 2.8649 20 6 11.1680 -1.4379 3.9516 21 6 12.2561 -1.1939 4.7671 22 6 13.4745 -1.7923 4.4943 23 9 14.5392 -1.5485 5.2893 24 6 13.6028 -2.6401 3.4073 25 6 12.5151 -2.8896 2.5929 26 6 4.1969 -1.1893 1.2403 27 1 -0.4850 0.8401 0.0004 28 1 3.6762 -0.1601 -1.8782 29 1 4.0015 -2.5175 -1.8225 30 1 3.3931 -3.3734 -0.3676 31 1 6.1487 -2.3001 -0.9442 32 1 5.6679 -3.6795 0.0804 33 1 7.7711 -3.3576 1.4206 34 1 8.2220 -1.9741 0.3957 35 1 9.1405 -0.8042 2.3803 36 1 8.6893 -2.1882 3.4047 37 1 10.2188 -0.9678 4.1622 38 1 12.1573 -0.5330 5.6156 39 1 14.5537 -3.1066 3.1958 40 1 12.6156 -3.5507 1.7448 41 1 3.6310 -1.7893 1.9529 42 1 4.3037 -0.1673 1.6040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:16 Heat of formation + Delta-G solvation = -160.613596 kcal Electronic energy + Delta-G solvation = -26437.987765 eV Core-core repulsion = 22297.042387 eV Total energy + Delta-G solvation = -4140.945378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.84697 -41.39922 -40.92541 -39.29295 -38.24182 -36.37806 -34.48125 -33.36857 -32.24847 -31.71052 -30.27944 -29.93620 -27.36195 -25.53692 -24.18767 -23.62007 -22.78785 -21.57147 -20.28206 -19.51358 -19.39632 -18.51659 -17.91169 -17.61150 -17.56477 -17.17429 -16.69104 -16.48251 -16.41260 -16.22199 -15.75208 -15.36739 -15.21482 -14.98369 -14.60296 -14.47617 -14.12199 -14.01945 -13.87195 -13.70604 -13.64619 -13.52039 -13.16574 -12.75589 -12.73915 -12.57498 -12.36465 -12.14044 -11.95615 -11.81138 -11.72023 -11.27963 -11.05609 -10.67966 -10.33189 -10.21624 -9.61605 -9.16114 -8.38112 -6.50000 0.13066 0.16134 1.42081 1.48491 1.55692 1.65042 1.69501 2.37888 2.40018 2.53473 2.94952 3.29614 3.39205 3.54192 3.68841 3.76805 3.83111 3.88898 3.91506 4.09024 4.26757 4.28827 4.30690 4.36996 4.52235 4.54084 4.68192 4.71181 4.77241 4.87950 4.89296 4.97074 5.10219 5.11996 5.17347 5.20909 5.26337 5.33345 5.54058 5.66454 6.05543 6.25630 6.55814 6.59891 6.99035 7.07222 7.30259 8.74412 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.002215 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.091931 B =12640.570389 C =13153.269339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 1.002 2.998 4 H -0.274 1.274 5 H -0.340 1.340 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.212 3.788 10 O -0.564 6.564 11 C -0.140 4.140 12 C 0.103 3.897 13 N -0.612 5.612 14 C 0.521 3.479 15 O -0.597 6.597 16 C -0.119 4.119 17 C 0.078 3.922 18 O -0.313 6.313 19 C 0.110 3.890 20 C -0.190 4.190 21 C -0.118 4.118 22 C 0.040 3.960 23 F -0.149 7.149 24 C -0.109 4.109 25 C -0.123 4.123 26 C 0.116 3.884 27 H 0.267 0.733 28 H 0.386 0.614 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.069 0.931 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.915 -8.824 0.589 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.172 4.172 3 Si 0.837 3.163 4 H -0.201 1.201 5 H -0.273 1.273 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.172 3.828 10 O -0.374 6.374 11 C -0.178 4.178 12 C -0.019 4.019 13 N -0.344 5.344 14 C 0.312 3.688 15 O -0.480 6.480 16 C -0.158 4.158 17 C 0.002 3.998 18 O -0.226 6.226 19 C 0.065 3.935 20 C -0.209 4.209 21 C -0.136 4.136 22 C 0.021 3.979 23 F -0.128 7.128 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.007 4.007 27 H 0.075 0.925 28 H 0.236 0.764 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.184 0.816 40 H 0.181 0.819 41 H 0.087 0.913 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 26.063 -8.308 1.519 27.398 hybrid contribution -0.770 1.209 0.266 1.458 sum 25.294 -7.099 1.784 26.332 Atomic orbital electron populations 1.70064 1.08197 1.28379 1.50249 1.25790 0.95262 1.03253 0.92921 0.84808 0.75998 0.77100 0.78355 1.20070 1.27312 1.20754 1.21454 0.90979 0.93792 1.51814 0.92706 1.20148 0.90698 0.84638 0.87337 1.86085 1.79474 1.46823 1.25013 1.23181 0.94639 0.97790 1.02196 1.22316 0.98279 0.94982 0.86282 1.48712 1.09475 1.47023 1.29237 1.20661 0.85171 0.81273 0.81727 1.90685 1.85808 1.41310 1.30151 1.21354 0.88758 1.03795 1.01941 1.22383 0.81454 0.97112 0.98836 1.85965 1.17736 1.67604 1.51325 1.19272 0.88211 0.95447 0.90584 1.21333 1.00603 1.02141 0.96781 1.21132 0.91123 1.00441 1.00940 1.17826 0.84336 1.02439 0.93349 1.91472 1.54860 1.93490 1.72997 1.21231 1.00790 0.97601 0.93109 1.20555 0.88936 1.02394 1.02247 1.22596 0.82374 0.97140 0.98617 0.92453 0.76399 0.88042 0.90389 0.88984 0.88398 0.85089 0.85598 0.91795 0.91395 0.84210 0.83400 0.81603 0.81928 0.91303 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.96 21.45 0.30 -55.21 16 2 C 0.03 1.56 5.46 84.65 0.46 2.03 16 3 Si 1.00 49.04 24.92 68.60 1.71 50.75 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.34 -17.38 7.11 99.48 0.71 -16.67 16 6 H -0.28 -14.17 5.42 99.48 0.54 -13.63 16 7 C -0.54 -27.82 8.88 25.60 0.23 -27.59 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C 0.21 8.60 0.70 -10.07 -0.01 8.60 16 10 O -0.56 -22.22 8.53 -148.98 -1.27 -23.49 16 11 C -0.14 -4.07 6.11 31.78 0.19 -3.87 16 12 C 0.10 2.37 6.48 86.73 0.56 2.93 16 13 N -0.61 -19.70 3.32 -811.35 -2.70 -22.40 16 14 C 0.52 16.16 7.85 87.66 0.69 16.85 16 15 O -0.60 -23.85 16.24 -3.04 -0.05 -23.90 16 16 C -0.12 -2.31 5.26 29.85 0.16 -2.15 16 17 C 0.08 1.60 4.03 71.98 0.29 1.89 16 18 O -0.31 -6.00 10.14 -92.88 -0.94 -6.94 16 19 C 0.11 2.05 6.69 22.50 0.15 2.20 16 20 C -0.19 -3.57 9.04 22.36 0.20 -3.37 16 21 C -0.12 -2.08 10.02 22.30 0.22 -1.86 16 22 C 0.04 0.70 7.30 22.37 0.16 0.86 16 23 F -0.15 -2.88 17.27 44.97 0.78 -2.10 16 24 C -0.11 -1.52 10.02 22.30 0.22 -1.29 16 25 C -0.12 -1.79 9.99 22.36 0.22 -1.57 16 26 C 0.12 4.83 5.89 86.94 0.51 5.34 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.39 12.45 8.99 -74.06 -0.67 11.79 16 29 H 0.10 2.45 8.12 -2.38 -0.02 2.43 16 30 H 0.08 2.33 7.98 -2.39 -0.02 2.31 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.44 7.61 -2.38 -0.02 1.42 16 36 H 0.07 1.47 7.63 -2.39 -0.02 1.45 16 37 H 0.14 2.61 6.30 -2.91 -0.02 2.59 16 38 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 41 H 0.07 2.96 8.03 -2.39 -0.02 2.94 16 42 H 0.04 2.02 6.50 -2.39 -0.02 2.00 16 Total: -1.00 -72.13 351.93 2.32 -69.82 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.22 Total: 14.48 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 4.27 Total: -1.00 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.40 Total: -77.61 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -2.26 Total: -54.33 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.71 Total: 50.75 kcal Total: -72.13 2.32 -69.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.797 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds